Wall clock time and date at job start Tue Mar 31 2020 14:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34235 * 116.99637 * 2 1 4 4 O 1.20828 * 120.00020 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99813 * 180.02562 * 3 2 1 6 6 C 1.53007 * 109.47323 * 59.99965 * 5 3 2 7 7 C 1.52991 * 109.47124 * 299.99852 * 5 3 2 8 8 C 1.53002 * 109.46779 * 179.97438 * 5 3 2 9 9 N 1.46506 * 109.47041 * 179.97438 * 8 5 3 10 10 C 1.34773 * 119.99968 * 179.97438 * 9 8 5 11 11 O 1.21602 * 119.99987 * 359.73127 * 10 9 8 12 12 C 1.47436 * 119.99867 * 180.02562 * 10 9 8 13 13 C 1.41286 * 126.41299 * 359.41281 * 12 10 9 14 14 N 1.30448 * 108.02337 * 179.87788 * 13 12 10 15 15 N 1.39938 * 108.89467 * 0.38911 * 14 13 12 16 16 C 1.46503 * 125.75356 * 179.75148 * 15 14 13 17 17 C 1.50696 * 109.46974 * 269.99715 * 16 15 14 18 18 H 1.08001 * 120.00163 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99873 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99984 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00024 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47063 * 90.00165 * 21 19 17 23 23 H 1.48501 * 109.47045 * 210.00089 * 21 19 17 24 24 H 1.48501 * 109.46990 * 330.00178 * 21 19 17 25 25 C 1.34259 * 108.48882 * 359.74809 * 15 14 13 26 26 C 1.50699 * 126.28729 * 179.97438 * 25 15 14 27 27 H 1.08996 * 109.47280 * 299.99748 * 1 2 3 28 28 H 1.09001 * 109.47466 * 60.00201 * 1 2 3 29 29 H 1.09002 * 109.46830 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47188 * 179.97438 * 6 5 3 31 31 H 1.08994 * 109.46777 * 300.00331 * 6 5 3 32 32 H 1.08998 * 109.46728 * 60.00135 * 6 5 3 33 33 H 1.09004 * 109.47246 * 299.99870 * 7 5 3 34 34 H 1.09001 * 109.47264 * 60.00308 * 7 5 3 35 35 H 1.09002 * 109.47025 * 180.02562 * 7 5 3 36 36 H 1.09004 * 109.47178 * 60.00383 * 8 5 3 37 37 H 1.08993 * 109.47411 * 300.00065 * 8 5 3 38 38 H 0.97004 * 120.00014 * 0.02562 * 9 8 5 39 39 H 1.08000 * 125.99145 * 0.03887 * 13 12 10 40 40 H 1.09004 * 109.46911 * 29.99927 * 16 15 14 41 41 H 1.09002 * 109.46643 * 149.99548 * 16 15 14 42 42 H 0.96997 * 120.00146 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.47568 * 269.99949 * 26 25 15 44 44 H 1.09002 * 109.47528 * 29.99975 * 26 25 15 45 45 H 1.08998 * 109.46953 * 150.00240 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.1129 0.5817 -1.2502 7 6 4.1138 0.5813 1.2482 8 6 3.9999 2.7423 -0.0011 9 7 5.4630 2.8191 -0.0011 10 6 6.0747 4.0199 -0.0020 11 8 5.4124 5.0397 -0.0078 12 6 7.5471 4.0972 -0.0025 13 6 8.4442 3.0057 0.0095 14 7 9.6588 3.4815 0.0020 15 7 9.5978 4.8796 -0.0060 16 6 10.7483 5.7865 -0.0107 17 6 11.1421 6.1057 1.4085 18 1 10.5903 5.6762 2.2316 19 6 12.2068 6.9459 1.6561 20 7 12.8784 7.4693 0.6538 21 14 12.6946 7.3421 3.4153 22 1 13.6901 6.3471 3.8889 23 1 13.2891 8.7018 3.4699 24 1 11.4922 7.2922 4.2855 25 6 8.3071 5.2494 -0.0087 26 6 7.7844 6.6628 -0.0165 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 5.2013 0.6392 -1.2508 31 1 3.8038 -0.4635 -1.2503 32 1 3.7228 1.0760 -2.1399 33 1 3.7244 1.0752 2.1385 34 1 3.8048 -0.4640 1.2482 35 1 5.2023 0.6388 1.2480 36 1 3.6105 3.2366 0.8890 37 1 3.6099 3.2361 -0.8910 38 1 5.9914 2.0056 -0.0011 39 1 8.1721 1.9606 0.0202 40 1 11.5848 5.3096 -0.5215 41 1 10.4828 6.7074 -0.5300 42 1 13.6272 8.0607 0.8280 43 1 7.6577 7.0091 1.0093 44 1 8.4934 7.3097 -0.5333 45 1 6.8240 6.6921 -0.5310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889474189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:27 Heat of formation + Delta-G solvation = -64.387208 kcal Electronic energy + Delta-G solvation = -27178.371940 eV Core-core repulsion = 23197.352307 eV Total energy + Delta-G solvation = -3981.019632 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.18112 -40.75170 -38.98967 -37.21212 -36.38375 -33.94017 -33.18178 -32.01468 -31.11177 -28.29991 -27.83084 -27.80158 -26.78706 -26.10675 -23.85602 -23.24109 -21.87171 -20.07587 -19.90312 -18.99985 -17.64487 -17.42873 -16.79229 -16.76401 -16.46853 -15.52913 -15.32314 -15.13671 -14.59842 -14.46864 -14.18988 -14.14672 -13.90075 -13.71921 -13.23685 -13.15680 -12.75869 -12.66677 -12.56348 -12.43180 -12.29742 -12.15146 -12.07779 -11.78400 -11.52112 -11.46947 -11.30939 -11.17377 -11.12129 -10.88787 -10.62824 -10.37225 -10.19005 -9.93805 -9.41931 -8.98738 -8.71163 -8.59215 -7.91673 -6.33699 -4.41460 1.83554 2.19295 2.20741 2.78987 3.18225 3.19589 3.24872 3.30855 3.59592 3.92099 4.04685 4.24296 4.33126 4.34516 4.60910 4.72616 4.80332 4.99384 5.08044 5.12381 5.17988 5.25040 5.29038 5.32935 5.41750 5.54206 5.55267 5.67562 5.74398 5.79240 5.83332 5.95143 5.99906 6.14404 6.41829 6.52010 6.60617 6.79592 6.90810 7.15252 7.36316 7.55939 7.69984 7.77014 7.78869 8.37156 8.60261 8.64376 9.25414 10.74510 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.028419 B = 0.002295 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.016839 B =12197.543399 C =12266.769964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.355 6.355 3 C 0.474 3.526 4 O -0.499 6.499 5 C -0.066 4.066 6 C -0.144 4.144 7 C -0.144 4.144 8 C 0.145 3.855 9 N -0.733 5.733 10 C 0.605 3.395 11 O -0.552 6.552 12 C -0.332 4.332 13 C 0.057 3.943 14 N -0.295 5.295 15 N -0.314 5.314 16 C 0.251 3.749 17 C -0.539 4.539 18 H 0.065 0.935 19 C 0.067 3.933 20 N -0.889 5.889 21 Si 0.908 3.092 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.271 1.271 25 C 0.166 3.834 26 C -0.093 4.093 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.397 0.603 39 H 0.174 0.826 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.269 0.731 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.859 -15.730 -2.680 25.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.271 6.271 3 C 0.316 3.684 4 O -0.385 6.385 5 C -0.067 4.067 6 C -0.201 4.201 7 C -0.201 4.201 8 C 0.020 3.980 9 N -0.387 5.387 10 C 0.395 3.605 11 O -0.430 6.430 12 C -0.348 4.348 13 C -0.130 4.130 14 N -0.115 5.115 15 N -0.090 5.090 16 C 0.134 3.866 17 C -0.578 4.578 18 H 0.083 0.917 19 C -0.137 4.137 20 N -0.527 5.527 21 Si 0.735 3.265 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.196 1.196 25 C 0.029 3.971 26 C -0.151 4.151 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.232 0.768 39 H 0.191 0.809 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.994 -14.772 -2.743 24.218 hybrid contribution -0.416 -0.025 0.964 1.050 sum -19.410 -14.797 -1.778 24.472 Atomic orbital electron populations 1.23299 0.76181 1.03772 1.02717 1.86489 1.23436 1.33175 1.84027 1.23429 0.91353 0.81454 0.72186 1.90715 1.66965 1.36271 1.44536 1.20719 0.87624 0.98362 1.00021 1.21909 1.02265 1.00960 0.94959 1.21912 1.02285 1.00953 0.94985 1.21016 0.80962 0.92063 1.03923 1.45690 1.06031 1.08746 1.78275 1.17279 0.86271 0.82461 0.74471 1.90713 1.66598 1.34475 1.51248 1.19633 0.92676 0.92829 1.29631 1.23690 0.90205 0.98694 1.00438 1.77134 1.21391 0.89520 1.23465 1.49366 1.06243 1.04520 1.48920 1.19859 0.80835 0.86484 0.99447 1.21241 1.15832 1.29692 0.91012 0.91664 1.24927 0.95422 0.95061 0.98287 1.69911 1.20410 1.31344 1.31030 0.86320 0.78943 0.77783 0.83461 1.20254 1.20792 1.19599 1.21478 0.84828 0.96672 0.94125 1.20576 1.01874 0.88726 1.03958 0.91799 0.91796 0.87976 0.90471 0.90756 0.91607 0.91582 0.90750 0.90457 0.90590 0.90583 0.76759 0.80859 0.92510 0.92538 0.92111 0.89812 0.90871 0.88794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.35 -2.93 10.37 -39.27 -0.41 -3.33 16 3 C 0.47 4.72 6.55 36.00 0.24 4.95 16 4 O -0.50 -6.51 15.73 -18.75 -0.29 -6.80 16 5 C -0.07 -0.55 0.72 -155.66 -0.11 -0.66 16 6 C -0.14 -0.94 8.23 37.16 0.31 -0.63 16 7 C -0.14 -0.97 8.23 37.15 0.31 -0.67 16 8 C 0.14 1.64 3.85 -4.04 -0.02 1.62 16 9 N -0.73 -8.65 4.95 -61.38 -0.30 -8.95 16 10 C 0.60 9.92 7.81 -12.52 -0.10 9.83 16 11 O -0.55 -10.68 14.84 5.28 0.08 -10.60 16 12 C -0.33 -5.95 6.13 -105.07 -0.64 -6.60 16 13 C 0.06 0.95 11.50 -16.98 -0.20 0.76 16 14 N -0.30 -6.22 12.50 30.86 0.39 -5.83 16 15 N -0.31 -7.02 3.56 -57.77 -0.21 -7.23 16 16 C 0.25 6.21 5.97 -5.19 -0.03 6.18 16 17 C -0.54 -14.48 9.39 -34.44 -0.32 -14.80 16 18 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 19 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 20 N -0.89 -24.54 13.29 55.43 0.74 -23.80 16 21 Si 0.91 20.79 29.54 -169.99 -5.02 15.77 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 C 0.17 3.37 7.01 -81.61 -0.57 2.80 16 26 C -0.09 -1.70 9.57 36.01 0.34 -1.35 16 27 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 28 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 29 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.43 6.86 -51.93 -0.36 0.08 16 31 H 0.07 0.40 8.11 -51.93 -0.42 -0.02 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.42 8.11 -51.93 -0.42 -0.01 16 35 H 0.08 0.45 6.86 -51.93 -0.36 0.10 16 36 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 37 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 38 H 0.40 3.57 5.12 -40.82 -0.21 3.36 16 39 H 0.17 2.00 7.50 -52.49 -0.39 1.60 16 40 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.06 1.39 7.02 -51.93 -0.36 1.03 16 42 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.07 1.29 7.05 -51.93 -0.37 0.93 16 45 H 0.09 1.64 6.50 -51.93 -0.34 1.31 16 LS Contribution 379.51 15.07 5.72 5.72 Total: -1.00 -32.95 379.51 -5.71 -38.67 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.57 Total: 2.00 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 0.17 Total: 4.39 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.61 Total: -45.81 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.62 Total: -20.74 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.95 -5.71 -38.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889474189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.720 kcal (2) G-P(sol) polarization free energy of solvation -32.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds