Wall clock time and date at job start Tue Mar 31 2020 14:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34229 * 117.00235 * 2 1 4 4 O 1.20829 * 119.99954 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99842 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.47462 * 60.00346 * 5 3 2 7 7 N 1.46498 * 109.47102 * 180.02562 * 5 3 2 8 8 C 1.34777 * 120.00147 * 205.00131 * 7 5 3 9 9 O 1.21603 * 120.00160 * 0.02562 * 8 7 5 10 10 C 1.47429 * 120.00013 * 179.97438 * 8 7 5 11 11 C 1.41293 * 126.41485 * 0.02562 * 10 8 7 12 12 N 1.30448 * 108.02361 * 179.71995 * 11 10 8 13 13 N 1.39944 * 108.89724 * 0.40720 * 12 11 10 14 14 C 1.46491 * 125.75406 * 179.85047 * 13 12 11 15 15 C 1.50702 * 109.46957 * 269.68786 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.34263 * 108.48668 * 359.58371 * 13 12 11 24 24 C 1.50694 * 126.28514 * 180.26484 * 23 13 12 25 25 C 1.52995 * 109.47454 * 299.99998 * 5 3 2 26 26 C 1.53009 * 109.47055 * 305.00128 * 25 5 3 27 27 C 1.52998 * 109.47256 * 65.00096 * 25 5 3 28 28 H 1.09001 * 109.47080 * 59.99552 * 1 2 3 29 29 H 1.08995 * 109.47524 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46761 * 300.00298 * 1 2 3 31 31 H 0.97008 * 120.00191 * 24.99432 * 7 5 3 32 32 H 1.07999 * 125.98923 * 359.95357 * 11 10 8 33 33 H 1.09004 * 109.47166 * 149.69052 * 14 13 12 34 34 H 1.08994 * 109.47507 * 29.68759 * 14 13 12 35 35 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 36 36 H 1.08999 * 109.47548 * 90.00002 * 24 23 13 37 37 H 1.09005 * 109.47060 * 210.00231 * 24 23 13 38 38 H 1.08998 * 109.47841 * 329.99761 * 24 23 13 39 39 H 1.09005 * 109.47565 * 185.00279 * 25 5 3 40 40 H 1.09005 * 109.46811 * 59.99689 * 26 25 5 41 41 H 1.08996 * 109.47064 * 179.97438 * 26 25 5 42 42 H 1.09000 * 109.46932 * 300.00057 * 26 25 5 43 43 H 1.08998 * 109.46970 * 60.00170 * 27 25 5 44 44 H 1.09004 * 109.47572 * 180.02562 * 27 25 5 45 45 H 1.09005 * 109.46983 * 300.00540 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 1 3.9557 0.7809 -0.8908 7 7 3.9818 2.6796 0.0002 8 6 5.1871 3.0261 -0.4934 9 8 5.9296 2.1728 -0.9398 10 6 5.6049 4.4400 -0.4932 11 6 4.8548 5.5362 -0.0117 12 7 5.5656 6.6169 -0.1802 13 7 6.7828 6.2702 -0.7775 14 6 7.8568 7.2004 -1.1343 15 6 7.6492 7.6904 -2.5442 16 1 6.8017 7.3439 -3.1170 17 6 8.5378 8.5859 -3.1007 18 7 9.5695 9.0081 -2.4030 19 14 8.2761 9.1991 -4.8456 20 1 6.9654 9.8914 -4.9357 21 1 9.3622 10.1457 -5.2057 22 1 8.2931 8.0474 -5.7830 23 6 6.8026 4.9406 -0.9629 24 6 7.9260 4.1417 -1.5716 25 6 4.1139 0.5809 1.2482 26 6 3.4714 1.1929 2.4948 27 6 3.7868 -0.9124 1.1868 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.3894 3.3604 0.3558 32 1 3.8675 5.4875 0.4235 33 1 8.8175 6.6901 -1.0647 34 1 7.8455 8.0484 -0.4496 35 1 10.1949 9.6378 -2.7947 36 1 8.6134 3.8253 -0.7871 37 1 7.5177 3.2639 -2.0726 38 1 8.4595 4.7577 -2.2954 39 1 5.1948 0.7145 1.2938 40 1 2.3906 1.0593 2.4492 41 1 3.8612 0.6983 3.3844 42 1 3.7045 2.2568 2.5385 43 1 4.2445 -1.3484 0.2988 44 1 4.1765 -1.4067 2.0768 45 1 2.7059 -1.0460 1.1413 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890633465.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:51 Heat of formation + Delta-G solvation = -62.811445 kcal Electronic energy + Delta-G solvation = -27726.397670 eV Core-core repulsion = 23745.446367 eV Total energy + Delta-G solvation = -3980.951302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.24780 -40.70341 -38.96024 -36.90200 -36.35201 -33.95654 -33.25613 -32.02193 -31.13041 -29.00883 -27.76989 -27.32557 -26.80513 -26.12589 -23.43175 -22.35880 -22.11445 -20.46557 -19.57094 -19.19175 -17.82471 -17.60320 -16.95705 -16.81695 -16.38402 -15.54387 -15.18712 -14.98754 -14.69699 -14.49792 -14.35884 -13.99683 -13.70604 -13.54322 -13.31289 -13.22165 -12.62927 -12.56906 -12.54018 -12.47699 -12.14318 -12.06482 -11.79140 -11.55337 -11.47028 -11.29466 -11.22560 -11.13174 -10.95873 -10.87757 -10.62301 -10.37157 -10.19312 -9.95477 -9.49123 -9.14156 -8.70727 -8.58702 -7.94132 -6.33556 -4.41614 1.85295 2.09926 2.21723 2.79096 3.16416 3.20553 3.24454 3.29264 3.53017 3.85047 4.24619 4.32167 4.49053 4.70250 4.76853 4.84826 4.87457 4.99503 5.07386 5.18087 5.21787 5.31173 5.34119 5.47430 5.58468 5.65843 5.68654 5.76657 5.85639 5.92213 5.95036 6.04575 6.08924 6.20806 6.33518 6.52631 6.58289 6.78489 6.89705 7.15797 7.36936 7.55798 7.63712 7.77032 7.78845 8.36877 8.50193 8.64043 9.25413 10.74552 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.022981 B = 0.002676 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.094407 B =10461.457519 C =10768.898643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.348 6.348 3 C 0.463 3.537 4 O -0.500 6.500 5 C 0.164 3.836 6 H 0.126 0.874 7 N -0.721 5.721 8 C 0.611 3.389 9 O -0.552 6.552 10 C -0.333 4.333 11 C 0.060 3.940 12 N -0.295 5.295 13 N -0.314 5.314 14 C 0.251 3.749 15 C -0.542 4.542 16 H 0.065 0.935 17 C 0.068 3.932 18 N -0.889 5.889 19 Si 0.908 3.092 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.273 1.273 23 C 0.168 3.832 24 C -0.098 4.098 25 C -0.101 4.101 26 C -0.151 4.151 27 C -0.155 4.155 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.408 0.592 32 H 0.176 0.824 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.270 0.730 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.048 0.952 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.286 -19.410 7.666 24.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.264 6.264 3 C 0.305 3.695 4 O -0.387 6.387 5 C 0.057 3.943 6 H 0.143 0.857 7 N -0.376 5.376 8 C 0.403 3.597 9 O -0.431 6.431 10 C -0.348 4.348 11 C -0.127 4.127 12 N -0.114 5.114 13 N -0.090 5.090 14 C 0.134 3.866 15 C -0.580 4.580 16 H 0.083 0.917 17 C -0.136 4.136 18 N -0.527 5.527 19 Si 0.735 3.265 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.198 1.198 23 C 0.031 3.969 24 C -0.156 4.156 25 C -0.121 4.121 26 C -0.208 4.208 27 C -0.213 4.213 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.082 0.918 31 H 0.244 0.756 32 H 0.193 0.807 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.666 -18.151 7.464 23.358 hybrid contribution -0.799 0.126 -0.829 1.158 sum -13.465 -18.026 6.635 23.457 Atomic orbital electron populations 1.23321 0.76410 1.03811 1.02733 1.86581 1.23312 1.32627 1.83863 1.23776 0.91869 0.81752 0.72072 1.90684 1.66794 1.36263 1.44977 1.20435 0.86142 0.85356 1.02387 0.85672 1.45551 1.19474 1.06924 1.65670 1.17266 0.79751 0.87362 0.75332 1.90698 1.53015 1.51560 1.47812 1.19546 0.98675 0.93138 1.23447 1.23761 0.99430 0.89742 0.99783 1.77160 0.93536 1.23178 1.17554 1.49395 1.13720 1.05289 1.40622 1.19851 0.81450 0.87803 0.97477 1.21226 1.11652 1.27713 0.97431 0.91678 1.24922 0.94541 0.95346 0.98801 1.69906 1.13372 1.31905 1.37493 0.86379 0.78079 0.78821 0.83237 1.19894 1.20869 1.19820 1.21464 0.95877 0.85311 0.94257 1.20622 0.94528 0.99533 1.00932 1.21499 1.02137 0.95635 0.92835 1.21903 0.99913 1.01595 0.97433 1.22008 1.03182 0.93882 1.02207 0.91749 0.87932 0.91806 0.75570 0.80708 0.92527 0.92476 0.92044 0.90444 0.88589 0.89861 0.88606 0.93282 0.91816 0.91943 0.92087 0.92196 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.26 16 2 O -0.35 -3.05 7.71 -39.26 -0.30 -3.35 16 3 C 0.46 5.02 5.80 36.01 0.21 5.23 16 4 O -0.50 -6.54 15.59 -18.75 -0.29 -6.84 16 5 C 0.16 1.81 2.29 -69.09 -0.16 1.66 16 6 H 0.13 1.44 7.58 -51.93 -0.39 1.05 16 7 N -0.72 -9.34 4.39 -56.02 -0.25 -9.59 16 8 C 0.61 9.92 7.78 -12.52 -0.10 9.83 16 9 O -0.55 -9.86 14.50 5.27 0.08 -9.78 16 10 C -0.33 -6.08 6.13 -105.07 -0.64 -6.72 16 11 C 0.06 1.07 11.50 -16.98 -0.20 0.88 16 12 N -0.29 -6.40 12.50 30.86 0.39 -6.02 16 13 N -0.31 -7.09 3.56 -57.78 -0.21 -7.30 16 14 C 0.25 6.25 5.78 -5.20 -0.03 6.22 16 15 C -0.54 -14.61 9.39 -34.44 -0.32 -14.93 16 16 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 17 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 18 N -0.89 -24.57 13.29 55.43 0.74 -23.83 16 19 Si 0.91 20.85 29.54 -169.99 -5.02 15.83 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 23 C 0.17 3.41 7.01 -81.60 -0.57 2.84 16 24 C -0.10 -1.74 9.34 36.00 0.34 -1.41 16 25 C -0.10 -0.96 2.87 -90.62 -0.26 -1.22 16 26 C -0.15 -1.33 8.76 37.16 0.33 -1.00 16 27 C -0.16 -1.20 8.83 37.16 0.33 -0.87 16 28 H 0.06 0.43 8.13 -51.93 -0.42 0.00 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 31 H 0.41 4.97 6.75 -40.82 -0.28 4.69 16 32 H 0.18 2.38 7.50 -52.49 -0.39 1.98 16 33 H 0.06 1.39 7.62 -51.93 -0.40 0.99 16 34 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.10 1.66 6.50 -51.93 -0.34 1.32 16 38 H 0.08 1.54 7.70 -51.93 -0.40 1.14 16 39 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.42 7.07 -51.93 -0.37 0.06 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.60 7.75 -51.93 -0.40 0.20 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.56 5.46 -51.93 -0.28 0.28 16 LS Contribution 377.19 15.07 5.68 5.68 Total: -1.00 -31.13 377.19 -5.89 -37.02 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.60 Total: 4.69 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -0.11 Total: 3.48 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.67 Total: -46.74 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.52 Total: -19.97 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.13 -5.89 -37.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890633465.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.793 kcal (2) G-P(sol) polarization free energy of solvation -31.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds