Wall clock time and date at job start Tue Mar 31 2020 14:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34229 * 117.00235 * 2 1 4 4 O 1.20829 * 119.99954 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99842 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.47462 * 60.00346 * 5 3 2 7 7 N 1.46498 * 109.47102 * 180.02562 * 5 3 2 8 8 C 1.34777 * 120.00147 * 205.00131 * 7 5 3 9 9 O 1.21603 * 120.00160 * 0.02562 * 8 7 5 10 10 C 1.47429 * 120.00013 * 179.97438 * 8 7 5 11 11 C 1.41293 * 126.41485 * 0.02562 * 10 8 7 12 12 N 1.30448 * 108.02361 * 179.71995 * 11 10 8 13 13 N 1.39944 * 108.89724 * 0.40720 * 12 11 10 14 14 C 1.46491 * 125.75406 * 179.85047 * 13 12 11 15 15 C 1.50702 * 109.46957 * 269.68786 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.34263 * 108.48668 * 359.58371 * 13 12 11 24 24 C 1.50694 * 126.28514 * 180.26484 * 23 13 12 25 25 C 1.52995 * 109.47454 * 299.99998 * 5 3 2 26 26 C 1.53009 * 109.47055 * 305.00128 * 25 5 3 27 27 C 1.52998 * 109.47256 * 65.00096 * 25 5 3 28 28 H 1.09001 * 109.47080 * 59.99552 * 1 2 3 29 29 H 1.08995 * 109.47524 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46761 * 300.00298 * 1 2 3 31 31 H 0.97008 * 120.00191 * 24.99432 * 7 5 3 32 32 H 1.07999 * 125.98923 * 359.95357 * 11 10 8 33 33 H 1.09004 * 109.47166 * 149.69052 * 14 13 12 34 34 H 1.08994 * 109.47507 * 29.68759 * 14 13 12 35 35 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 36 36 H 1.08999 * 109.47548 * 90.00002 * 24 23 13 37 37 H 1.09005 * 109.47060 * 210.00231 * 24 23 13 38 38 H 1.08998 * 109.47841 * 329.99761 * 24 23 13 39 39 H 1.09005 * 109.47565 * 185.00279 * 25 5 3 40 40 H 1.09005 * 109.46811 * 59.99689 * 26 25 5 41 41 H 1.08996 * 109.47064 * 179.97438 * 26 25 5 42 42 H 1.09000 * 109.46932 * 300.00057 * 26 25 5 43 43 H 1.08998 * 109.46970 * 60.00170 * 27 25 5 44 44 H 1.09004 * 109.47572 * 180.02562 * 27 25 5 45 45 H 1.09005 * 109.46983 * 300.00540 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 1 3.9557 0.7809 -0.8908 7 7 3.9818 2.6796 0.0002 8 6 5.1871 3.0261 -0.4934 9 8 5.9296 2.1728 -0.9398 10 6 5.6049 4.4400 -0.4932 11 6 4.8548 5.5362 -0.0117 12 7 5.5656 6.6169 -0.1802 13 7 6.7828 6.2702 -0.7775 14 6 7.8568 7.2004 -1.1343 15 6 7.6492 7.6904 -2.5442 16 1 6.8017 7.3439 -3.1170 17 6 8.5378 8.5859 -3.1007 18 7 9.5695 9.0081 -2.4030 19 14 8.2761 9.1991 -4.8456 20 1 6.9654 9.8914 -4.9357 21 1 9.3622 10.1457 -5.2057 22 1 8.2931 8.0474 -5.7830 23 6 6.8026 4.9406 -0.9629 24 6 7.9260 4.1417 -1.5716 25 6 4.1139 0.5809 1.2482 26 6 3.4714 1.1929 2.4948 27 6 3.7868 -0.9124 1.1868 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.3894 3.3604 0.3558 32 1 3.8675 5.4875 0.4235 33 1 8.8175 6.6901 -1.0647 34 1 7.8455 8.0484 -0.4496 35 1 10.1949 9.6378 -2.7947 36 1 8.6134 3.8253 -0.7871 37 1 7.5177 3.2639 -2.0726 38 1 8.4595 4.7577 -2.2954 39 1 5.1948 0.7145 1.2938 40 1 2.3906 1.0593 2.4492 41 1 3.8612 0.6983 3.3844 42 1 3.7045 2.2568 2.5385 43 1 4.2445 -1.3484 0.2988 44 1 4.1765 -1.4067 2.0768 45 1 2.7059 -1.0460 1.1413 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890633465.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:50 Heat of formation + Delta-G solvation = -81.840761 kcal Electronic energy + Delta-G solvation = -27727.222843 eV Core-core repulsion = 23745.446367 eV Total energy + Delta-G solvation = -3981.776475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.41764 -41.93139 -40.15427 -37.76179 -37.25902 -35.82960 -34.46144 -33.66887 -32.72491 -29.95925 -29.09008 -28.33602 -27.97315 -27.21386 -25.30755 -23.52074 -23.09451 -21.65956 -20.69776 -20.59788 -19.03747 -18.83305 -18.43495 -17.80522 -17.63037 -16.77222 -16.52873 -16.37265 -16.07652 -15.67724 -15.49491 -15.25832 -14.77112 -14.71262 -14.40788 -14.27000 -14.06424 -14.03176 -13.63439 -13.58524 -13.33368 -13.11052 -13.09364 -12.96925 -12.79838 -12.70701 -12.35540 -12.30185 -12.00796 -11.93766 -11.88324 -11.74227 -11.68772 -11.43781 -10.88548 -10.76218 -10.27845 -10.24861 -9.48997 -8.38186 -6.54633 0.64871 1.00748 1.25095 1.36802 1.38167 1.38944 1.47671 1.69994 2.30672 2.34935 2.49293 2.93997 3.53390 3.65348 3.74131 3.77099 3.91219 4.10552 4.15278 4.21728 4.32896 4.36614 4.42356 4.56717 4.61589 4.68668 4.74831 4.79490 4.83880 4.89834 4.93563 5.04226 5.08173 5.15932 5.17928 5.21377 5.32437 5.37626 5.48674 5.56137 5.63646 5.74527 6.04207 6.44634 6.54234 6.57635 6.81962 7.16449 7.22918 8.69511 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.022981 B = 0.002676 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.094407 B =10461.457519 C =10768.898643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.344 6.344 3 C 0.471 3.529 4 O -0.525 6.525 5 C 0.160 3.840 6 H 0.123 0.877 7 N -0.708 5.708 8 C 0.616 3.384 9 O -0.569 6.569 10 C -0.331 4.331 11 C 0.078 3.922 12 N -0.335 5.335 13 N -0.338 5.338 14 C 0.268 3.732 15 C -0.558 4.558 16 H 0.051 0.949 17 C 0.025 3.975 18 N -0.916 5.916 19 Si 0.970 3.030 20 H -0.274 1.274 21 H -0.272 1.272 22 H -0.266 1.266 23 C 0.152 3.848 24 C -0.090 4.090 25 C -0.097 4.097 26 C -0.149 4.149 27 C -0.150 4.150 28 H 0.059 0.941 29 H 0.135 0.865 30 H 0.065 0.935 31 H 0.413 0.587 32 H 0.218 0.782 33 H 0.053 0.947 34 H 0.031 0.969 35 H 0.275 0.725 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.051 0.949 41 H 0.076 0.924 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.071 0.929 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.847 -21.242 7.679 27.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.259 6.259 3 C 0.314 3.686 4 O -0.414 6.414 5 C 0.053 3.947 6 H 0.140 0.860 7 N -0.362 5.362 8 C 0.407 3.593 9 O -0.449 6.449 10 C -0.346 4.346 11 C -0.109 4.109 12 N -0.155 5.155 13 N -0.114 5.114 14 C 0.149 3.851 15 C -0.596 4.596 16 H 0.069 0.931 17 C -0.177 4.177 18 N -0.553 5.553 19 Si 0.794 3.206 20 H -0.200 1.200 21 H -0.197 1.197 22 H -0.191 1.191 23 C 0.016 3.984 24 C -0.148 4.148 25 C -0.116 4.116 26 C -0.206 4.206 27 C -0.208 4.208 28 H 0.078 0.922 29 H 0.153 0.847 30 H 0.084 0.916 31 H 0.250 0.750 32 H 0.234 0.766 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.084 0.916 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.257 -20.025 7.496 25.700 hybrid contribution -0.438 0.560 -0.760 1.041 sum -14.696 -19.465 6.736 25.302 Atomic orbital electron populations 1.23628 0.74679 1.05963 1.02637 1.86570 1.24881 1.31215 1.83212 1.23587 0.91530 0.82014 0.71477 1.90678 1.67230 1.37150 1.46364 1.20598 0.86819 0.84009 1.03252 0.85966 1.45377 1.18299 1.08216 1.64319 1.16953 0.80578 0.86245 0.75568 1.90691 1.53821 1.51643 1.48731 1.19824 0.97940 0.94444 1.22397 1.24424 1.00250 0.88447 0.97780 1.77110 0.93899 1.25185 1.19300 1.49137 1.13964 1.05747 1.42602 1.19374 0.82301 0.87441 0.95973 1.21376 1.11438 1.28364 0.98425 0.93054 1.25715 0.94114 0.95228 1.02593 1.69987 1.13969 1.32280 1.39105 0.85422 0.78049 0.78519 0.78635 1.19976 1.19694 1.19070 1.21979 0.97300 0.84691 0.94475 1.20614 0.94147 0.99013 1.01060 1.21459 1.01143 0.96808 0.92229 1.21887 1.00063 1.01043 0.97596 1.21979 1.03534 0.92392 1.02865 0.92198 0.84702 0.91607 0.74957 0.76562 0.92932 0.95058 0.91619 0.88737 0.88009 0.91169 0.90034 0.92978 0.90504 0.92927 0.92077 0.90968 0.90234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.56 113.37 1.20 1.44 16 2 O -0.34 -5.20 7.71 -51.41 -0.40 -5.59 16 3 C 0.47 9.34 5.80 71.24 0.41 9.75 16 4 O -0.53 -12.87 15.59 21.95 0.34 -12.53 16 5 C 0.16 3.28 2.29 44.24 0.10 3.38 16 6 H 0.12 2.64 7.58 -2.39 -0.02 2.63 16 7 N -0.71 -17.29 4.39 -449.39 -1.97 -19.26 16 8 C 0.62 19.32 7.78 86.66 0.67 20.00 16 9 O -0.57 -19.76 14.50 -4.04 -0.06 -19.82 16 10 C -0.33 -11.87 6.13 -20.15 -0.12 -12.00 16 11 C 0.08 2.71 11.50 85.65 0.99 3.69 16 12 N -0.34 -14.73 12.50 -56.27 -0.70 -15.43 16 13 N -0.34 -15.67 3.56 -336.72 -1.20 -16.87 16 14 C 0.27 13.85 5.78 85.64 0.50 14.35 16 15 C -0.56 -30.88 9.39 25.60 0.24 -30.63 16 16 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 17 C 0.03 1.36 5.46 84.66 0.46 1.82 16 18 N -0.92 -51.27 13.29 21.45 0.28 -50.99 16 19 Si 0.97 42.81 29.54 68.60 2.03 44.83 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 23 C 0.15 6.19 7.01 42.14 0.30 6.48 16 24 C -0.09 -3.23 9.34 71.23 0.67 -2.57 16 25 C -0.10 -1.66 2.87 -10.79 -0.03 -1.69 16 26 C -0.15 -2.31 8.76 71.99 0.63 -1.68 16 27 C -0.15 -1.96 8.83 71.98 0.64 -1.32 16 28 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 29 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.66 8.13 -2.38 -0.02 0.64 16 31 H 0.41 9.30 6.75 -92.70 -0.63 8.68 16 32 H 0.22 5.36 7.50 -2.91 -0.02 5.34 16 33 H 0.05 2.70 7.62 -2.38 -0.02 2.69 16 34 H 0.03 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.27 14.40 8.31 -92.70 -0.77 13.63 16 36 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 37 H 0.10 3.50 6.50 -2.38 -0.02 3.48 16 38 H 0.07 2.67 7.70 -2.39 -0.02 2.65 16 39 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.05 0.78 7.07 -2.38 -0.02 0.76 16 41 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.05 0.92 7.75 -2.39 -0.02 0.90 16 43 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 45 H 0.08 0.97 5.46 -2.38 -0.01 0.96 16 Total: -1.00 -67.52 377.19 5.35 -62.17 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.39 Total: 22.47 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 6.64 Total: 11.02 kcal Atomic # 7 Polarization: -98.96 SS G_CDS: -3.59 Total: -102.55 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -0.11 Total: -37.94 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -67.52 5.35 -62.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890633465.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.668 kcal (2) G-P(sol) polarization free energy of solvation -67.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds