Wall clock time and date at job start Tue Mar 31 2020 14:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34831 * 116.99985 * 2 1 4 4 O 1.21599 * 119.99986 * 359.97438 * 3 2 1 5 5 C 1.46747 * 120.00067 * 180.02562 * 3 2 1 6 6 C 1.41479 * 126.51319 * 89.99462 * 5 3 2 7 7 C 1.50694 * 125.91465 * 359.96707 * 6 5 3 8 8 N 1.30303 * 108.16880 * 179.97438 * 6 5 3 9 9 N 1.39901 * 109.21194 * 359.77034 * 8 6 5 10 10 C 1.46503 * 125.74714 * 180.27380 * 9 8 6 11 11 C 1.34767 * 108.50867 * 0.39042 * 9 8 6 12 12 N 1.38488 * 126.43467 * 179.88688 * 11 9 8 13 13 C 1.34777 * 119.99562 * 330.15857 * 12 11 9 14 14 O 1.21274 * 120.00214 * 354.15128 * 13 12 11 15 15 C 1.50699 * 119.99986 * 174.15185 * 13 12 11 16 16 C 1.53000 * 109.47308 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.47528 * 179.97438 * 16 15 13 18 18 C 1.52996 * 109.47172 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.46952 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99870 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00209 * 179.97438 * 19 18 17 22 22 N 1.31520 * 119.99850 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00255 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46983 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46984 * 120.00358 * 23 21 19 26 26 H 1.48504 * 109.46996 * 240.00024 * 23 21 19 27 27 H 1.08991 * 109.46798 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46875 * 300.00596 * 1 2 3 29 29 H 1.08997 * 109.46893 * 60.00424 * 1 2 3 30 30 H 1.09009 * 109.47194 * 90.00044 * 7 6 5 31 31 H 1.08998 * 109.47326 * 209.99737 * 7 6 5 32 32 H 1.08996 * 109.47367 * 329.99836 * 7 6 5 33 33 H 1.09000 * 109.46670 * 272.84746 * 10 9 8 34 34 H 1.08997 * 109.46860 * 32.84787 * 10 9 8 35 35 H 1.08998 * 109.47113 * 152.85004 * 10 9 8 36 36 H 0.96993 * 120.00772 * 150.16291 * 12 11 9 37 37 H 1.08999 * 109.47004 * 300.00122 * 15 13 12 38 38 H 1.08999 * 109.47231 * 60.00458 * 15 13 12 39 39 H 1.09003 * 109.47110 * 300.00563 * 16 15 13 40 40 H 1.09004 * 109.46863 * 60.00037 * 16 15 13 41 41 H 1.08999 * 109.46901 * 300.00400 * 17 16 15 42 42 H 1.08993 * 109.46646 * 59.99841 * 17 16 15 43 43 H 1.08999 * 109.47219 * 299.99820 * 18 17 16 44 44 H 1.09004 * 109.47356 * 59.99961 * 18 17 16 45 45 H 0.97001 * 119.99731 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4019 2.2212 -0.0005 5 6 3.5296 1.2782 -0.0006 6 6 4.3698 1.3224 -1.1380 7 6 3.9150 1.2980 -2.5744 8 7 5.6051 1.3876 -0.7284 9 7 5.6265 1.3943 0.6705 10 6 6.8266 1.4651 1.5078 11 6 4.3574 1.3219 1.1181 12 7 3.9522 1.3012 2.4422 13 6 4.7549 0.7675 3.3842 14 8 5.7828 0.2111 3.0607 15 6 4.3753 0.8623 4.8395 16 6 5.4483 0.1820 5.6919 17 6 5.0632 0.2787 7.1695 18 6 6.1366 -0.4011 8.0219 19 6 5.7569 -0.3063 9.4772 20 1 4.8414 0.1889 9.7652 21 6 6.5778 -0.8526 10.4408 22 7 7.6925 -1.4560 10.0899 23 14 6.1069 -0.7358 12.2447 24 1 4.8160 -0.0131 12.3734 25 1 5.9684 -2.1021 12.8096 26 1 7.1622 0.0013 12.9851 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.7510 2.3184 -2.9210 31 1 4.6796 0.8238 -3.1897 32 1 2.9853 0.7343 -2.6517 33 1 7.2110 0.4593 1.6774 34 1 7.5856 2.0642 1.0048 35 1 6.5759 1.9243 2.4639 36 1 3.0908 1.6705 2.6917 37 1 4.2937 1.9108 5.1262 38 1 3.4176 0.3666 4.9982 39 1 5.5295 -0.8665 5.4051 40 1 6.4063 0.6773 5.5333 41 1 4.9824 1.3273 7.4559 42 1 4.1052 -0.2162 7.3283 43 1 6.2179 -1.4496 7.7355 44 1 7.0945 0.0943 7.8629 45 1 8.2699 -1.8407 10.7679 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892893961.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:31 Heat of formation + Delta-G solvation = -73.790406 kcal Electronic energy + Delta-G solvation = -26910.526301 eV Core-core repulsion = 22929.098915 eV Total energy + Delta-G solvation = -3981.427386 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.08344 -41.27354 -40.78527 -37.44801 -36.83950 -36.37414 -35.07675 -34.56207 -31.94219 -31.01877 -30.50102 -28.67824 -27.57255 -26.87580 -24.88462 -23.75408 -22.64967 -21.73672 -21.55133 -20.48555 -19.28493 -18.53851 -18.51047 -18.35733 -17.78518 -17.53272 -17.00196 -16.61691 -16.48980 -15.93515 -15.66109 -15.47499 -14.66226 -14.56993 -14.43556 -14.40636 -14.09224 -13.92154 -13.74290 -13.60933 -13.43718 -13.31410 -13.09878 -12.99383 -12.83647 -12.34167 -12.32888 -12.18218 -12.13973 -11.91153 -11.79156 -11.59893 -11.36523 -11.35638 -11.18119 -10.94819 -10.55141 -10.13466 -9.58006 -8.19033 -6.30292 0.23286 0.88935 0.92744 1.13832 1.36738 1.40834 1.40877 1.54220 1.64459 2.00499 2.41632 3.14339 3.25100 3.49313 3.69035 3.92842 3.98724 4.08010 4.11850 4.18127 4.30367 4.33244 4.38354 4.49193 4.60921 4.65152 4.68013 4.71537 4.75597 4.77315 4.81235 4.87055 4.91318 5.18227 5.22419 5.33049 5.37685 5.38727 5.57977 5.64087 5.79945 5.89761 5.90517 6.26216 6.45520 6.62245 6.71330 6.89017 7.39472 8.93125 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020359 B = 0.002204 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.961850 B =12699.677904 C =13721.023138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.358 6.358 3 C 0.565 3.435 4 O -0.518 6.518 5 C -0.322 4.322 6 C 0.131 3.869 7 C -0.077 4.077 8 N -0.308 5.308 9 N -0.358 5.358 10 C 0.116 3.884 11 C 0.366 3.634 12 N -0.640 5.640 13 C 0.512 3.488 14 O -0.534 6.534 15 C -0.123 4.123 16 C -0.096 4.096 17 C -0.097 4.097 18 C 0.018 3.982 19 C -0.539 4.539 20 H 0.065 0.935 21 C -0.007 4.007 22 N -0.937 5.937 23 Si 0.966 3.034 24 H -0.258 1.258 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.128 0.872 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.440 0.560 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.048 0.952 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.060 0.940 43 H -0.015 1.015 44 H -0.013 1.013 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.273 7.153 -24.383 29.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.274 6.274 3 C 0.407 3.593 4 O -0.407 6.407 5 C -0.338 4.338 6 C -0.036 4.036 7 C -0.135 4.135 8 N -0.131 5.131 9 N -0.140 5.140 10 C -0.023 4.023 11 C 0.138 3.862 12 N -0.293 5.293 13 C 0.303 3.697 14 O -0.409 6.409 15 C -0.162 4.162 16 C -0.134 4.134 17 C -0.135 4.135 18 C -0.019 4.019 19 C -0.577 4.577 20 H 0.083 0.917 21 C -0.204 4.204 22 N -0.578 5.578 23 Si 0.790 3.210 24 H -0.181 1.181 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.146 0.854 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.282 0.718 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.004 0.996 44 H 0.005 0.995 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.264 7.031 -24.700 28.459 hybrid contribution -0.877 -0.137 1.546 1.782 sum -13.141 6.894 -23.154 27.501 Atomic orbital electron populations 1.23658 0.74178 1.05848 1.03186 1.86725 1.25318 1.32057 1.83266 1.19786 0.86997 0.81370 0.71100 1.90860 1.67172 1.36794 1.45828 1.18602 0.90995 1.31734 0.92487 1.22700 0.88425 0.95219 0.97282 1.20448 1.02641 1.04798 0.85607 1.77137 1.20446 1.28407 0.87078 1.48539 1.04999 1.55393 1.05031 1.22267 0.83468 1.04330 0.92243 1.18048 0.85803 0.96802 0.85504 1.43018 1.23707 1.60417 1.02146 1.21766 0.82290 0.76506 0.89185 1.90835 1.25880 1.41426 1.82771 1.21742 1.02235 1.05934 0.86300 1.21278 0.97824 1.00176 0.94144 1.21442 0.98673 1.00492 0.92847 1.19059 0.94286 0.94263 0.94288 1.21794 1.07012 1.35796 0.93101 0.91662 1.26052 0.94955 0.94956 1.04409 1.70127 1.13677 1.38837 1.35135 0.85386 0.78694 0.77918 0.78968 1.18142 1.20614 1.20598 0.85374 0.91349 0.91137 0.88369 0.88643 0.89381 0.89662 0.88616 0.89450 0.71784 0.85216 0.85427 0.93342 0.92852 0.91938 0.92107 0.99643 0.99460 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.57 113.37 1.20 1.47 16 2 O -0.36 -6.75 10.58 -57.44 -0.61 -7.36 16 3 C 0.56 12.28 7.46 70.05 0.52 12.81 16 4 O -0.52 -12.85 16.90 19.51 0.33 -12.52 16 5 C -0.32 -7.57 6.02 -20.02 -0.12 -7.69 16 6 C 0.13 2.94 7.26 43.58 0.32 3.25 16 7 C -0.08 -1.07 10.28 71.23 0.73 -0.33 16 8 N -0.31 -7.95 12.47 -46.63 -0.58 -8.53 16 9 N -0.36 -9.16 3.94 -365.02 -1.44 -10.60 16 10 C 0.12 2.66 9.21 127.77 1.18 3.84 16 11 C 0.37 8.77 7.34 132.54 0.97 9.74 16 12 N -0.64 -12.03 5.34 -307.35 -1.64 -13.67 16 13 C 0.51 11.17 6.77 87.66 0.59 11.76 16 14 O -0.53 -15.36 11.01 -3.01 -0.03 -15.40 16 15 C -0.12 -2.33 5.70 29.85 0.17 -2.16 16 16 C -0.10 -2.91 4.50 30.59 0.14 -2.77 16 17 C -0.10 -3.57 5.15 30.59 0.16 -3.41 16 18 C 0.02 0.94 4.97 29.85 0.15 1.09 16 19 C -0.54 -30.18 9.11 25.60 0.23 -29.95 16 20 H 0.07 3.44 7.74 -2.91 -0.02 3.41 16 21 C -0.01 -0.38 5.46 84.65 0.46 0.09 16 22 N -0.94 -57.62 13.29 21.45 0.28 -57.33 16 23 Si 0.97 43.88 29.54 68.60 2.03 45.90 16 24 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 27 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 1.03 8.01 -2.39 -0.02 1.02 16 33 H 0.09 2.21 6.89 -2.39 -0.02 2.19 16 34 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.09 1.93 6.11 -2.39 -0.01 1.92 16 36 H 0.44 5.64 8.82 -92.71 -0.82 4.83 16 37 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.05 1.64 8.10 -2.39 -0.02 1.62 16 40 H 0.05 1.74 8.10 -2.38 -0.02 1.72 16 41 H 0.06 2.13 8.14 -2.39 -0.02 2.12 16 42 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 43 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 44 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 45 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -77.55 383.97 5.23 -72.33 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.19 Total: 9.44 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 6.70 Total: -2.26 kcal Atomic # 7 Polarization: -86.75 SS G_CDS: -3.38 Total: -90.13 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.31 Total: -35.27 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -77.55 5.23 -72.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892893961.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.465 kcal (2) G-P(sol) polarization free energy of solvation -77.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds