Wall clock time and date at job start Tue Mar 31 2020 14:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38121 * 126.29772 * 2 1 4 4 C 1.47289 * 126.42646 * 359.97438 * 3 2 1 5 5 O 1.21524 * 120.00049 * 0.02562 * 4 3 2 6 6 O 1.34755 * 119.99947 * 180.02562 * 4 3 2 7 7 C 1.45199 * 117.00136 * 180.02562 * 6 4 3 8 8 H 1.08993 * 109.47016 * 330.00521 * 7 6 4 9 9 C 1.53001 * 109.46733 * 90.00052 * 7 6 4 10 10 C 1.50698 * 109.47028 * 209.99893 * 7 6 4 11 11 O 1.21283 * 120.00472 * 355.00405 * 10 7 6 12 12 N 1.34777 * 119.99538 * 174.99742 * 10 7 6 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 7 14 14 C 1.52999 * 109.47341 * 85.27876 * 13 12 10 15 15 C 1.53001 * 109.47193 * 205.27836 * 13 12 10 16 16 C 1.41347 * 107.14296 * 180.24250 * 3 2 1 17 17 N 1.30431 * 108.01545 * 359.58778 * 16 3 2 18 18 N 1.34222 * 126.29231 * 179.97438 * 2 1 3 19 19 C 1.46497 * 125.74356 * 0.02562 * 18 2 1 20 20 C 1.50707 * 109.47259 * 90.00048 * 19 18 2 21 21 H 1.07995 * 119.99674 * 359.97438 * 20 19 18 22 22 C 1.37876 * 120.00122 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00054 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99865 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47303 * 90.00342 * 24 22 20 26 26 H 1.48501 * 109.46996 * 210.00303 * 24 22 20 27 27 H 1.48504 * 109.47304 * 329.99833 * 24 22 20 28 28 H 1.09002 * 109.46920 * 89.97202 * 1 2 3 29 29 H 1.08997 * 109.47591 * 209.98165 * 1 2 3 30 30 H 1.09003 * 109.46713 * 329.97546 * 1 2 3 31 31 H 1.09001 * 109.47321 * 60.00482 * 9 7 6 32 32 H 1.08999 * 109.46748 * 179.97438 * 9 7 6 33 33 H 1.08995 * 109.47503 * 299.99715 * 9 7 6 34 34 H 0.97001 * 120.00485 * 0.02562 * 12 10 7 35 35 H 1.08999 * 109.47228 * 325.27715 * 13 12 10 36 36 H 1.08996 * 109.47098 * 180.02562 * 14 13 12 37 37 H 1.09001 * 109.46823 * 300.00095 * 14 13 12 38 38 H 1.08999 * 109.47091 * 59.99755 * 14 13 12 39 39 H 1.09004 * 109.47138 * 59.99988 * 15 13 12 40 40 H 1.09005 * 109.47453 * 179.97438 * 15 13 12 41 41 H 1.08999 * 109.46935 * 300.00059 * 15 13 12 42 42 H 1.08000 * 125.98912 * 179.75970 * 16 3 2 43 43 H 1.08997 * 109.47277 * 209.99696 * 19 18 2 44 44 H 1.08996 * 109.47308 * 329.99868 * 19 18 2 45 45 H 0.97000 * 120.00431 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.1132 0.0000 4 6 1.8873 2.5196 -0.0005 5 8 0.7019 2.7873 -0.0006 6 8 2.8015 3.5096 -0.0010 7 6 2.2984 4.8716 -0.0009 8 1 1.3375 4.9040 -0.5143 9 6 2.1223 5.3501 1.4417 10 6 3.2783 5.7691 -0.7118 11 8 4.3407 5.3254 -1.0932 12 7 2.9740 7.0648 -0.9238 13 6 3.9291 7.9388 -1.6095 14 6 3.7460 7.8065 -3.1227 15 6 3.6839 9.3899 -1.1911 16 6 3.6599 0.6494 -0.0057 17 7 3.6340 -0.6546 0.0000 18 7 2.3015 -1.0818 0.0005 19 6 1.8497 -2.4754 0.0006 20 6 1.6952 -2.9536 -1.4203 21 1 1.9116 -2.2860 -2.2411 22 6 1.2778 -4.2432 -1.6721 23 7 1.0138 -5.0560 -0.6725 24 14 1.0857 -4.8356 -3.4332 25 1 2.3668 -5.4238 -3.9002 26 1 0.0168 -5.8646 -3.4956 27 1 0.7207 -3.6894 -4.3041 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3634 -0.8901 0.5135 30 1 -0.3633 0.8898 0.5142 31 1 3.0833 5.3177 1.9551 32 1 1.7451 6.3727 1.4417 33 1 1.4136 4.7010 1.9558 34 1 2.1245 7.4198 -0.6185 35 1 4.9448 7.6495 -1.3397 36 1 4.4569 8.4564 -3.6328 37 1 3.9207 6.7727 -3.4208 38 1 2.7303 8.0958 -3.3925 39 1 3.8144 9.4842 -0.1130 40 1 4.3949 10.0402 -1.7009 41 1 2.6682 9.6792 -1.4608 42 1 4.5461 1.2666 -0.0109 43 1 2.5840 -3.0954 0.5147 44 1 0.8909 -2.5465 0.5141 45 1 0.7197 -5.9632 -0.8496 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892957632.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:02 Heat of formation + Delta-G solvation = -85.449087 kcal Electronic energy + Delta-G solvation = -27060.209245 eV Core-core repulsion = 23078.276301 eV Total energy + Delta-G solvation = -3981.932944 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.48201 -41.53568 -40.44207 -37.57026 -36.85617 -35.85062 -34.02079 -33.72605 -32.85376 -31.52073 -29.39232 -28.35752 -28.08848 -26.12085 -25.38670 -23.99398 -22.46041 -21.71250 -21.37234 -20.55477 -19.05169 -18.82618 -18.46784 -17.63769 -17.26081 -16.97172 -16.64719 -16.28319 -16.11759 -15.81767 -15.36212 -15.06542 -14.96968 -14.54722 -14.38248 -14.08678 -13.97611 -13.73678 -13.70020 -13.61212 -13.33483 -13.17137 -13.15816 -13.05103 -13.02454 -12.72176 -12.67161 -12.33000 -12.28974 -11.92289 -11.90694 -11.87284 -11.85816 -11.34831 -10.83727 -10.76949 -10.35076 -10.20307 -9.69526 -8.39120 -6.55102 0.39024 1.11802 1.22637 1.37076 1.38570 1.44451 1.49055 1.70015 2.18215 2.31616 2.34432 2.93570 3.52438 3.64699 3.69143 3.80345 3.89992 3.96632 3.97833 4.14582 4.16188 4.32867 4.43561 4.58446 4.65403 4.69106 4.72903 4.76683 4.77489 4.87484 4.94681 4.96615 5.02285 5.11066 5.11208 5.27830 5.32052 5.34623 5.47758 5.49510 5.55893 5.72690 5.95666 6.42560 6.52689 6.68491 6.83004 7.13323 7.15874 8.68967 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.021918 B = 0.002419 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.177980 B =11571.149001 C =12024.582245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.165 3.835 3 C -0.323 4.323 4 C 0.560 3.440 5 O -0.532 6.532 6 O -0.338 6.338 7 C 0.064 3.936 8 H 0.119 0.881 9 C -0.157 4.157 10 C 0.519 3.481 11 O -0.564 6.564 12 N -0.704 5.704 13 C 0.133 3.867 14 C -0.164 4.164 15 C -0.151 4.151 16 C 0.095 3.905 17 N -0.334 5.334 18 N -0.332 5.332 19 C 0.265 3.735 20 C -0.557 4.557 21 H 0.051 0.949 22 C 0.026 3.974 23 N -0.914 5.914 24 Si 0.971 3.029 25 H -0.275 1.275 26 H -0.270 1.270 27 H -0.270 1.270 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.115 0.885 33 H 0.071 0.929 34 H 0.418 0.582 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.029 0.971 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.214 0.786 43 H 0.034 0.966 44 H 0.059 0.941 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.057 28.917 1.856 28.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.028 3.972 3 C -0.336 4.336 4 C 0.408 3.592 5 O -0.424 6.424 6 O -0.254 6.254 7 C 0.006 3.994 8 H 0.137 0.863 9 C -0.214 4.214 10 C 0.304 3.696 11 O -0.442 6.442 12 N -0.359 5.359 13 C 0.029 3.971 14 C -0.222 4.222 15 C -0.209 4.209 16 C -0.092 4.092 17 N -0.154 5.154 18 N -0.108 5.108 19 C 0.147 3.853 20 C -0.595 4.595 21 H 0.069 0.931 22 C -0.176 4.176 23 N -0.552 5.552 24 Si 0.794 3.206 25 H -0.200 1.200 26 H -0.194 1.194 27 H -0.194 1.194 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.087 0.913 32 H 0.134 0.866 33 H 0.090 0.910 34 H 0.256 0.744 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.048 0.952 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.231 0.769 43 H 0.052 0.948 44 H 0.077 0.923 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.000 27.279 1.650 27.329 hybrid contribution -0.643 -0.102 -0.713 0.965 sum -0.642 27.177 0.937 27.200 Atomic orbital electron populations 1.20682 0.84655 1.04846 1.04584 1.21984 0.96229 0.86057 0.92960 1.19016 0.93701 0.90064 1.30850 1.19746 0.83367 0.84758 0.71350 1.90725 1.17872 1.84401 1.49388 1.86660 1.39021 1.15350 1.84323 1.22707 0.97661 0.78658 1.00410 0.86318 1.22165 1.03741 1.04057 0.91479 1.20352 0.86933 0.83504 0.78776 1.90738 1.26303 1.75298 1.51869 1.45891 1.22487 1.08097 1.59440 1.21087 0.92928 0.91027 0.92063 1.22189 1.03324 1.01257 0.95415 1.22030 1.03977 0.92247 1.02601 1.24456 0.97905 0.91330 0.95511 1.77183 0.98375 1.13939 1.25862 1.49212 1.03284 1.08017 1.50312 1.19488 0.95690 0.71769 0.98348 1.21371 1.48099 0.98556 0.91472 0.93070 1.25698 0.93805 0.95889 1.02220 1.69983 1.44677 1.07602 1.32951 0.85361 0.78301 0.78246 0.78643 1.20038 1.19428 1.19443 0.89176 0.90199 0.87333 0.91311 0.86614 0.90952 0.74399 0.91458 0.90061 0.95161 0.91028 0.91334 0.89808 0.90388 0.76939 0.94793 0.92306 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.08 9.57 71.24 0.68 -2.39 16 2 C 0.16 6.75 7.01 42.17 0.30 7.04 16 3 C -0.32 -12.42 6.13 -20.16 -0.12 -12.54 16 4 C 0.56 19.06 7.93 70.20 0.56 19.62 16 5 O -0.53 -18.00 14.10 19.76 0.28 -17.72 16 6 O -0.34 -10.42 9.27 -50.28 -0.47 -10.89 16 7 C 0.06 1.40 2.98 29.85 0.09 1.49 16 8 H 0.12 2.38 7.16 -2.39 -0.02 2.37 16 9 C -0.16 -2.37 9.50 71.98 0.68 -1.69 16 10 C 0.52 11.77 7.15 87.66 0.63 12.40 16 11 O -0.56 -18.50 16.17 15.71 0.25 -18.24 16 12 N -0.70 -9.40 5.04 -442.54 -2.23 -11.63 16 13 C 0.13 1.68 3.19 44.99 0.14 1.83 16 14 C -0.16 -2.21 9.49 71.98 0.68 -1.52 16 15 C -0.15 -0.79 9.38 71.98 0.68 -0.12 16 16 C 0.10 3.69 11.87 85.67 1.02 4.71 16 17 N -0.33 -15.33 12.50 -56.24 -0.70 -16.03 16 18 N -0.33 -15.54 3.56 -336.66 -1.20 -16.74 16 19 C 0.27 13.59 5.97 85.64 0.51 14.10 16 20 C -0.56 -30.60 9.39 25.60 0.24 -30.36 16 21 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 22 C 0.03 1.38 5.46 84.65 0.46 1.84 16 23 N -0.91 -50.68 13.29 21.45 0.28 -50.40 16 24 Si 0.97 42.66 29.54 68.60 2.03 44.68 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 28 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 29 H 0.08 2.67 7.05 -2.39 -0.02 2.66 16 30 H 0.11 3.35 6.51 -2.39 -0.02 3.33 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.12 0.80 7.92 -2.39 -0.02 0.78 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.42 2.53 8.38 -92.71 -0.78 1.75 16 35 H 0.07 1.19 7.57 -2.39 -0.02 1.17 16 36 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.07 0.32 8.14 -2.38 -0.02 0.30 16 40 H 0.08 0.33 8.14 -2.38 -0.02 0.31 16 41 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.21 6.79 8.06 -2.91 -0.02 6.76 16 43 H 0.03 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.06 2.95 7.01 -2.39 -0.02 2.93 16 45 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -72.14 386.98 5.02 -67.13 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.23 Total: 15.45 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 6.54 Total: 14.39 kcal Atomic # 7 Polarization: -90.95 SS G_CDS: -3.85 Total: -94.80 kcal Atomic # 8 Polarization: -46.92 SS G_CDS: 0.07 Total: -46.85 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -72.14 5.02 -67.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892957632.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.323 kcal (2) G-P(sol) polarization free energy of solvation -72.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds