Wall clock time and date at job start Tue Mar 31 2020 14:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38120 * 126.29477 * 2 1 4 4 C 1.47291 * 126.42656 * 0.05792 * 3 2 1 5 5 O 1.21520 * 120.00059 * 0.02562 * 4 3 2 6 6 O 1.34756 * 119.99648 * 179.97438 * 4 3 2 7 7 C 1.45200 * 116.99417 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.46730 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.47148 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.47224 * 180.02562 * 9 8 7 11 11 O 1.21280 * 119.99984 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99640 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99847 * 179.97438 * 12 10 9 14 14 C 1.46501 * 120.00706 * 359.97438 * 12 10 9 15 15 C 1.41344 * 107.14765 * 180.02562 * 3 2 1 16 16 N 1.30427 * 108.01038 * 359.72043 * 15 3 2 17 17 N 1.34222 * 126.29232 * 180.02562 * 2 1 3 18 18 C 1.46491 * 125.74900 * 359.97341 * 17 2 1 19 19 C 1.50702 * 109.46957 * 90.00099 * 18 17 2 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 17 22 22 N 1.31514 * 119.99985 * 180.27663 * 21 19 18 23 23 Si 1.86800 * 119.99777 * 0.28166 * 21 19 18 24 24 H 1.48498 * 109.47109 * 89.99834 * 23 21 19 25 25 H 1.48507 * 109.46754 * 209.99574 * 23 21 19 26 26 H 1.48498 * 109.47278 * 329.99405 * 23 21 19 27 27 H 1.09001 * 109.46792 * 269.96786 * 1 2 3 28 28 H 1.08995 * 109.47272 * 29.96905 * 1 2 3 29 29 H 1.08999 * 109.47175 * 149.97218 * 1 2 3 30 30 H 1.08996 * 109.47648 * 299.99457 * 7 6 4 31 31 H 1.08996 * 109.47451 * 60.00493 * 7 6 4 32 32 H 1.09001 * 109.47377 * 300.00103 * 8 7 6 33 33 H 1.08997 * 109.47491 * 60.00394 * 8 7 6 34 34 H 1.09007 * 109.47141 * 299.99824 * 9 8 7 35 35 H 1.09002 * 109.47584 * 59.99804 * 9 8 7 36 36 H 1.09000 * 109.46921 * 89.99803 * 13 12 10 37 37 H 1.08998 * 109.47605 * 209.99473 * 13 12 10 38 38 H 1.09007 * 109.47338 * 330.00108 * 13 12 10 39 39 H 1.09006 * 109.46441 * 0.02562 * 14 12 10 40 40 H 1.09001 * 109.47442 * 120.00131 * 14 12 10 41 41 H 1.08995 * 109.47380 * 240.00490 * 14 12 10 42 42 H 1.08000 * 125.99491 * 179.97438 * 15 3 2 43 43 H 1.09004 * 109.47166 * 330.00365 * 18 17 2 44 44 H 1.08994 * 109.47507 * 210.00071 * 18 17 2 45 45 H 0.96996 * 119.99730 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.1132 0.0000 4 6 1.8872 2.5197 0.0012 5 8 0.7018 2.7873 0.0028 6 8 2.8015 3.5096 0.0016 7 6 2.2982 4.8716 0.0033 8 6 3.4745 5.8499 0.0029 9 6 2.9443 7.2851 0.0054 10 6 4.1030 8.2488 0.0043 11 8 5.2408 7.8290 0.0022 12 7 3.8747 9.5770 0.0066 13 6 5.0010 10.5138 0.0061 14 6 2.5003 10.0842 0.0097 15 6 3.6599 0.6496 -0.0006 16 7 3.6340 -0.6544 0.0051 17 7 2.3015 -1.0818 -0.0005 18 6 1.8499 -2.4754 -0.0006 19 6 1.6945 -2.9530 -1.4214 20 1 1.9110 -2.2853 -2.2423 21 6 1.2819 -4.2443 -1.6735 22 7 1.1516 -4.6627 -2.9134 23 14 0.9080 -5.3992 -0.2537 24 1 -0.5244 -5.2784 0.1186 25 1 1.1968 -6.7971 -0.6636 26 1 1.7546 -5.0404 0.9124 27 1 -0.3633 -0.0006 1.0277 28 1 -0.3633 0.8902 -0.5133 29 1 -0.3633 -0.8897 -0.5143 30 1 1.6897 5.0353 -0.8860 31 1 1.6910 5.0334 0.8939 32 1 4.0835 5.6864 0.8920 33 1 4.0814 5.6881 -0.8879 34 1 2.3351 7.4490 -0.8836 35 1 2.3376 7.4468 0.8964 36 1 5.2786 10.7476 -1.0217 37 1 4.7122 11.4297 0.5217 38 1 5.8504 10.0611 0.5179 39 1 1.8037 9.2457 0.0101 40 1 2.3388 10.6907 0.9008 41 1 2.3357 10.6932 -0.8791 42 1 4.5461 1.2669 -0.0012 43 1 0.8913 -2.5467 0.5136 44 1 2.5846 -3.0955 0.5129 45 1 0.8610 -5.5710 -3.0907 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892997499.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:57 Heat of formation + Delta-G solvation = -54.335393 kcal Electronic energy + Delta-G solvation = -26151.833924 eV Core-core repulsion = 22171.250171 eV Total energy + Delta-G solvation = -3980.583753 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.94962 -40.30205 -39.58198 -36.38473 -35.95820 -34.10414 -33.86798 -32.22510 -31.40496 -29.37786 -28.23430 -27.53694 -26.88036 -25.75335 -23.38116 -22.47628 -21.82973 -20.35265 -19.52358 -18.91595 -17.50119 -17.34177 -17.23762 -16.82382 -16.45092 -16.15704 -16.03862 -15.12767 -14.97203 -14.60245 -14.18846 -14.00762 -13.63528 -13.43870 -13.19322 -13.08902 -12.97114 -12.86987 -12.71150 -12.59885 -12.51818 -12.32074 -12.23871 -12.11765 -11.68061 -11.47274 -11.37850 -11.24230 -10.86819 -10.45619 -10.41410 -10.33226 -10.22081 -9.87855 -9.78996 -9.18439 -8.87187 -8.70178 -8.11971 -6.34866 -4.40174 1.86767 2.23229 2.45494 2.65559 2.83220 3.09002 3.16604 3.17804 3.32819 3.64159 4.07570 4.13951 4.48414 4.60930 4.63004 4.78946 4.80704 4.91218 5.00242 5.04809 5.08332 5.08724 5.13350 5.14162 5.23821 5.28506 5.38129 5.45665 5.61900 5.80331 5.86889 5.92226 5.95099 6.03007 6.22442 6.34040 6.42868 6.53672 6.72828 6.84985 7.01332 7.15414 7.48290 7.75026 8.13954 8.17125 8.28161 8.68441 9.18582 10.77210 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.036447 B = 0.001871 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.063857 B =14962.638634 C =15264.385295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.175 3.825 3 C -0.316 4.316 4 C 0.552 3.448 5 O -0.531 6.531 6 O -0.353 6.353 7 C 0.071 3.929 8 C -0.106 4.106 9 C -0.137 4.137 10 C 0.513 3.487 11 O -0.533 6.533 12 N -0.627 5.627 13 C 0.084 3.916 14 C 0.073 3.927 15 C 0.085 3.915 16 N -0.294 5.294 17 N -0.311 5.311 18 C 0.224 3.776 19 C -0.548 4.548 20 H 0.082 0.918 21 C 0.082 3.918 22 N -0.881 5.881 23 Si 0.873 3.127 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.263 1.263 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.188 0.812 43 H 0.049 0.951 44 H 0.057 0.943 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.161 27.788 7.998 28.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.038 3.962 3 C -0.329 4.329 4 C 0.400 3.600 5 O -0.421 6.421 6 O -0.270 6.270 7 C -0.004 4.004 8 C -0.144 4.144 9 C -0.177 4.177 10 C 0.302 3.698 11 O -0.409 6.409 12 N -0.362 5.362 13 C -0.058 4.058 14 C -0.070 4.070 15 C -0.103 4.103 16 N -0.113 5.113 17 N -0.086 5.086 18 C 0.105 3.895 19 C -0.586 4.586 20 H 0.101 0.899 21 C -0.123 4.123 22 N -0.518 5.518 23 Si 0.698 3.302 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.188 1.188 27 H 0.098 0.902 28 H 0.116 0.884 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.205 0.795 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.756 26.242 7.878 27.409 hybrid contribution -0.817 0.279 0.464 0.980 sum -0.061 26.520 8.342 27.801 Atomic orbital electron populations 1.20694 0.86518 1.05403 1.03444 1.21439 0.94963 0.86309 0.93508 1.18831 0.93776 0.89392 1.30901 1.20001 0.83352 0.84941 0.71729 1.90750 1.17976 1.84584 1.48831 1.86535 1.39868 1.15624 1.85021 1.22891 0.96383 0.78664 1.02442 1.21272 0.97323 0.90328 1.05482 1.21573 0.97153 0.94150 1.04807 1.20705 0.90947 0.82484 0.75700 1.90735 1.23840 1.77452 1.48866 1.47781 1.07668 1.06125 1.74594 1.21624 0.89737 0.92516 1.01953 1.21898 0.82105 1.00800 1.02173 1.23973 0.96779 0.92009 0.97549 1.77227 0.97674 1.12498 1.23911 1.48957 1.02922 1.07515 1.49247 1.20195 0.95830 0.73106 1.00328 1.21096 1.48345 0.99195 0.89955 0.89947 1.24793 0.94268 0.97367 0.95890 1.69861 1.45050 1.18167 1.18677 0.86901 0.79500 0.81074 0.82686 1.19494 1.20330 1.18751 0.90188 0.88427 0.89421 0.91315 0.91377 0.89886 0.89814 0.88338 0.88375 0.92705 0.91263 0.90428 0.89889 0.91846 0.91838 0.79536 0.93308 0.92495 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.74 9.34 36.01 0.34 -1.40 16 2 C 0.18 3.48 7.01 -81.59 -0.57 2.91 16 3 C -0.32 -5.91 6.13 -105.08 -0.64 -6.56 16 4 C 0.55 9.45 7.95 34.41 0.27 9.73 16 5 O -0.53 -9.57 14.63 -19.28 -0.28 -9.85 16 6 O -0.35 -5.18 10.07 -40.64 -0.41 -5.59 16 7 C 0.07 0.76 5.48 37.16 0.20 0.97 16 8 C -0.11 -0.99 4.88 -26.73 -0.13 -1.12 16 9 C -0.14 -0.90 4.01 -27.88 -0.11 -1.01 16 10 C 0.51 4.69 7.67 -10.99 -0.08 4.60 16 11 O -0.53 -7.11 15.56 5.56 0.09 -7.03 16 12 N -0.63 -4.14 3.27 -189.51 -0.62 -4.76 16 13 C 0.08 0.48 10.48 59.85 0.63 1.11 16 14 C 0.07 0.22 10.60 59.85 0.63 0.86 16 15 C 0.08 1.55 11.87 -16.97 -0.20 1.35 16 16 N -0.29 -6.35 12.50 30.87 0.39 -5.96 16 17 N -0.31 -6.85 3.56 -57.77 -0.21 -7.06 16 18 C 0.22 5.16 4.85 -5.20 -0.03 5.13 16 19 C -0.55 -14.87 9.94 -34.44 -0.34 -15.21 16 20 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 21 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 22 N -0.88 -25.61 13.96 55.43 0.77 -24.84 16 23 Si 0.87 19.55 27.47 -169.99 -4.67 14.88 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 27 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.10 1.63 6.51 -51.93 -0.34 1.29 16 29 H 0.09 1.54 7.70 -51.93 -0.40 1.14 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 33 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 34 H 0.10 0.46 7.79 -51.92 -0.40 0.06 16 35 H 0.10 0.44 7.79 -51.93 -0.40 0.04 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.23 8.07 -51.93 -0.42 -0.19 16 38 H 0.08 0.57 7.42 -51.93 -0.39 0.19 16 39 H 0.08 0.16 5.77 -51.93 -0.30 -0.14 16 40 H 0.06 0.13 8.14 -51.93 -0.42 -0.30 16 41 H 0.06 0.14 8.14 -51.93 -0.42 -0.29 16 42 H 0.19 2.73 8.06 -52.49 -0.42 2.31 16 43 H 0.05 1.02 7.05 -51.93 -0.37 0.66 16 44 H 0.06 1.32 7.19 -51.93 -0.37 0.94 16 45 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 382.20 15.07 5.76 5.76 Total: -1.00 -34.56 382.20 -6.09 -40.66 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -6.78 Total: 0.32 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -0.13 Total: 3.47 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.33 Total: -42.62 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.60 Total: -22.46 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.67 Total: 14.88 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.56 -6.09 -40.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892997499.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.678 kcal (2) G-P(sol) polarization free energy of solvation -34.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds