Wall clock time and date at job start Tue Mar 31 2020 14:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38120 * 126.29477 * 2 1 4 4 C 1.47291 * 126.42656 * 0.05792 * 3 2 1 5 5 O 1.21520 * 120.00059 * 0.02562 * 4 3 2 6 6 O 1.34756 * 119.99648 * 179.97438 * 4 3 2 7 7 C 1.45200 * 116.99417 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.46730 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.47148 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.47224 * 180.02562 * 9 8 7 11 11 O 1.21280 * 119.99984 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99640 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99847 * 179.97438 * 12 10 9 14 14 C 1.46501 * 120.00706 * 359.97438 * 12 10 9 15 15 C 1.41344 * 107.14765 * 180.02562 * 3 2 1 16 16 N 1.30427 * 108.01038 * 359.72043 * 15 3 2 17 17 N 1.34222 * 126.29232 * 180.02562 * 2 1 3 18 18 C 1.46491 * 125.74900 * 359.97341 * 17 2 1 19 19 C 1.50702 * 109.46957 * 90.00099 * 18 17 2 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 17 22 22 N 1.31514 * 119.99985 * 180.27663 * 21 19 18 23 23 Si 1.86800 * 119.99777 * 0.28166 * 21 19 18 24 24 H 1.48498 * 109.47109 * 89.99834 * 23 21 19 25 25 H 1.48507 * 109.46754 * 209.99574 * 23 21 19 26 26 H 1.48498 * 109.47278 * 329.99405 * 23 21 19 27 27 H 1.09001 * 109.46792 * 269.96786 * 1 2 3 28 28 H 1.08995 * 109.47272 * 29.96905 * 1 2 3 29 29 H 1.08999 * 109.47175 * 149.97218 * 1 2 3 30 30 H 1.08996 * 109.47648 * 299.99457 * 7 6 4 31 31 H 1.08996 * 109.47451 * 60.00493 * 7 6 4 32 32 H 1.09001 * 109.47377 * 300.00103 * 8 7 6 33 33 H 1.08997 * 109.47491 * 60.00394 * 8 7 6 34 34 H 1.09007 * 109.47141 * 299.99824 * 9 8 7 35 35 H 1.09002 * 109.47584 * 59.99804 * 9 8 7 36 36 H 1.09000 * 109.46921 * 89.99803 * 13 12 10 37 37 H 1.08998 * 109.47605 * 209.99473 * 13 12 10 38 38 H 1.09007 * 109.47338 * 330.00108 * 13 12 10 39 39 H 1.09006 * 109.46441 * 0.02562 * 14 12 10 40 40 H 1.09001 * 109.47442 * 120.00131 * 14 12 10 41 41 H 1.08995 * 109.47380 * 240.00490 * 14 12 10 42 42 H 1.08000 * 125.99491 * 179.97438 * 15 3 2 43 43 H 1.09004 * 109.47166 * 330.00365 * 18 17 2 44 44 H 1.08994 * 109.47507 * 210.00071 * 18 17 2 45 45 H 0.96996 * 119.99730 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.1132 0.0000 4 6 1.8872 2.5197 0.0012 5 8 0.7018 2.7873 0.0028 6 8 2.8015 3.5096 0.0016 7 6 2.2982 4.8716 0.0033 8 6 3.4745 5.8499 0.0029 9 6 2.9443 7.2851 0.0054 10 6 4.1030 8.2488 0.0043 11 8 5.2408 7.8290 0.0022 12 7 3.8747 9.5770 0.0066 13 6 5.0010 10.5138 0.0061 14 6 2.5003 10.0842 0.0097 15 6 3.6599 0.6496 -0.0006 16 7 3.6340 -0.6544 0.0051 17 7 2.3015 -1.0818 -0.0005 18 6 1.8499 -2.4754 -0.0006 19 6 1.6945 -2.9530 -1.4214 20 1 1.9110 -2.2853 -2.2423 21 6 1.2819 -4.2443 -1.6735 22 7 1.1516 -4.6627 -2.9134 23 14 0.9080 -5.3992 -0.2537 24 1 -0.5244 -5.2784 0.1186 25 1 1.1968 -6.7971 -0.6636 26 1 1.7546 -5.0404 0.9124 27 1 -0.3633 -0.0006 1.0277 28 1 -0.3633 0.8902 -0.5133 29 1 -0.3633 -0.8897 -0.5143 30 1 1.6897 5.0353 -0.8860 31 1 1.6910 5.0334 0.8939 32 1 4.0835 5.6864 0.8920 33 1 4.0814 5.6881 -0.8879 34 1 2.3351 7.4490 -0.8836 35 1 2.3376 7.4468 0.8964 36 1 5.2786 10.7476 -1.0217 37 1 4.7122 11.4297 0.5217 38 1 5.8504 10.0611 0.5179 39 1 1.8037 9.2457 0.0101 40 1 2.3388 10.6907 0.9008 41 1 2.3357 10.6932 -0.8791 42 1 4.5461 1.2669 -0.0012 43 1 0.8913 -2.5467 0.5136 44 1 2.5846 -3.0955 0.5129 45 1 0.8610 -5.5710 -3.0907 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892997499.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:56 Heat of formation + Delta-G solvation = -77.071815 kcal Electronic energy + Delta-G solvation = -26152.819849 eV Core-core repulsion = 22171.250171 eV Total energy + Delta-G solvation = -3981.569678 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.44825 -41.05310 -40.75758 -37.55416 -36.56754 -35.80184 -34.83468 -34.01413 -32.95325 -30.25210 -29.57857 -28.50813 -27.96898 -26.41343 -25.07872 -23.85873 -22.71515 -21.76642 -20.48835 -20.10267 -19.28830 -18.72460 -18.14462 -17.68315 -17.45074 -16.96918 -16.85763 -16.72369 -16.36902 -15.92461 -15.45669 -15.19927 -14.79489 -14.51677 -14.30333 -14.27729 -13.92777 -13.83078 -13.69981 -13.49582 -13.46152 -13.32489 -13.30460 -13.17405 -13.05822 -12.74684 -12.56863 -12.28597 -12.17660 -12.14850 -11.85116 -11.82448 -11.39514 -11.29187 -10.92165 -10.91431 -10.32718 -9.69524 -9.66712 -8.42847 -6.55642 0.41635 1.15576 1.33341 1.35559 1.43166 1.49268 1.59083 1.83482 2.17272 2.23637 2.25342 2.89448 3.50074 3.64178 3.69294 3.90691 3.93540 4.03913 4.13044 4.18107 4.35563 4.41880 4.42398 4.47322 4.47772 4.52836 4.58997 4.64931 4.66848 4.73660 4.78611 4.91610 4.96552 4.99916 5.05757 5.07613 5.16654 5.19725 5.47885 5.51015 5.57029 5.78622 6.17223 6.33521 6.47656 6.67437 6.90810 7.08413 7.13896 8.73489 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.036447 B = 0.001871 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.063857 B =14962.638634 C =15264.385295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.164 3.836 3 C -0.323 4.323 4 C 0.559 3.441 5 O -0.540 6.540 6 O -0.357 6.357 7 C 0.067 3.933 8 C -0.098 4.098 9 C -0.128 4.128 10 C 0.504 3.496 11 O -0.589 6.589 12 N -0.625 5.625 13 C 0.080 3.920 14 C 0.066 3.934 15 C 0.096 3.904 16 N -0.333 5.333 17 N -0.334 5.334 18 C 0.232 3.768 19 C -0.556 4.556 20 H 0.026 0.974 21 C 0.024 3.976 22 N -0.934 5.934 23 Si 0.950 3.050 24 H -0.250 1.250 25 H -0.279 1.279 26 H -0.242 1.242 27 H 0.108 0.892 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.056 0.944 37 H 0.097 0.903 38 H 0.054 0.946 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.220 0.780 43 H 0.077 0.923 44 H 0.058 0.942 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.848 29.419 10.125 31.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.028 3.972 3 C -0.336 4.336 4 C 0.406 3.594 5 O -0.432 6.432 6 O -0.274 6.274 7 C -0.006 4.006 8 C -0.136 4.136 9 C -0.168 4.168 10 C 0.293 3.707 11 O -0.470 6.470 12 N -0.358 5.358 13 C -0.063 4.063 14 C -0.076 4.076 15 C -0.091 4.091 16 N -0.152 5.152 17 N -0.110 5.110 18 C 0.113 3.887 19 C -0.594 4.594 20 H 0.045 0.955 21 C -0.176 4.176 22 N -0.572 5.572 23 Si 0.771 3.229 24 H -0.174 1.174 25 H -0.204 1.204 26 H -0.166 1.166 27 H 0.126 0.874 28 H 0.118 0.882 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.074 0.926 37 H 0.116 0.884 38 H 0.073 0.927 39 H 0.116 0.884 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.237 0.763 43 H 0.095 0.905 44 H 0.076 0.924 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.956 27.954 10.011 29.708 hybrid contribution -0.245 0.022 -0.295 0.384 sum -1.201 27.976 9.716 29.639 Atomic orbital electron populations 1.20751 0.84720 1.04944 1.05087 1.22007 0.96255 0.86144 0.92789 1.19109 0.93790 0.90371 1.30355 1.19687 0.83352 0.84814 0.71536 1.90738 1.18343 1.84780 1.49304 1.86513 1.39525 1.16936 1.84413 1.23201 0.97124 0.76645 1.03652 1.21177 0.96539 0.91925 1.04003 1.21568 0.96493 0.91351 1.07349 1.21189 0.90776 0.83639 0.75073 1.90711 1.25971 1.78518 1.51764 1.47958 1.09391 1.05507 1.72952 1.21702 0.89202 0.93196 1.02156 1.22178 0.80118 1.01758 1.03525 1.24530 0.97951 0.91292 0.95325 1.77166 0.98021 1.14153 1.25872 1.48845 1.03456 1.07505 1.51205 1.19981 0.97093 0.74072 0.97550 1.21184 1.48471 0.98871 0.90891 0.95545 1.25824 0.93582 0.99168 0.99069 1.70024 1.46538 1.18996 1.21624 0.85693 0.80562 0.77719 0.78971 1.17362 1.20426 1.16574 0.87383 0.88180 0.90411 0.90355 0.89843 0.91228 0.91596 0.85830 0.85535 0.92581 0.88448 0.92699 0.88430 0.90328 0.90633 0.76314 0.90512 0.92386 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.18 9.34 71.24 0.67 -2.51 16 2 C 0.16 6.44 7.01 42.17 0.30 6.74 16 3 C -0.32 -11.84 6.13 -20.16 -0.12 -11.96 16 4 C 0.56 18.27 7.95 70.20 0.56 18.83 16 5 O -0.54 -18.41 14.63 19.77 0.29 -18.12 16 6 O -0.36 -9.90 10.07 -56.67 -0.57 -10.47 16 7 C 0.07 1.31 5.48 71.98 0.39 1.70 16 8 C -0.10 -1.72 4.88 30.60 0.15 -1.57 16 9 C -0.13 -1.37 4.01 29.85 0.12 -1.25 16 10 C 0.50 8.72 7.67 87.66 0.67 9.39 16 11 O -0.59 -16.19 15.56 -3.03 -0.05 -16.23 16 12 N -0.62 -7.17 3.27 -871.88 -2.85 -10.02 16 13 C 0.08 0.85 10.48 127.77 1.34 2.19 16 14 C 0.07 0.18 10.60 127.77 1.35 1.54 16 15 C 0.10 3.48 11.87 85.67 1.02 4.50 16 16 N -0.33 -14.45 12.50 -56.25 -0.70 -15.16 16 17 N -0.33 -14.76 3.56 -336.67 -1.20 -15.96 16 18 C 0.23 10.62 4.85 85.64 0.42 11.03 16 19 C -0.56 -31.09 9.94 25.60 0.25 -30.84 16 20 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 21 C 0.02 1.32 5.47 84.66 0.46 1.78 16 22 N -0.93 -55.94 13.96 21.45 0.30 -55.64 16 23 Si 0.95 39.69 27.47 68.60 1.88 41.57 16 24 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 25 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 26 H -0.24 -9.27 6.54 99.48 0.65 -8.62 16 27 H 0.11 2.89 8.14 -2.39 -0.02 2.88 16 28 H 0.10 3.22 6.51 -2.39 -0.02 3.20 16 29 H 0.08 2.69 7.70 -2.39 -0.02 2.67 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 1.41 8.10 -2.39 -0.02 1.39 16 33 H 0.07 1.39 8.10 -2.39 -0.02 1.37 16 34 H 0.12 0.73 7.79 -2.38 -0.02 0.71 16 35 H 0.13 0.66 7.79 -2.39 -0.02 0.65 16 36 H 0.06 0.57 8.14 -2.39 -0.02 0.56 16 37 H 0.10 0.45 8.07 -2.39 -0.02 0.43 16 38 H 0.05 0.84 7.42 -2.38 -0.02 0.82 16 39 H 0.10 -0.01 5.77 -2.38 -0.01 -0.02 16 40 H 0.08 0.03 8.14 -2.39 -0.02 0.01 16 41 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 42 H 0.22 6.10 8.06 -2.91 -0.02 6.08 16 43 H 0.08 3.06 7.05 -2.38 -0.02 3.04 16 44 H 0.06 2.62 7.19 -2.39 -0.02 2.61 16 45 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -79.25 382.20 5.61 -73.64 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.94 Total: 16.83 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 7.57 Total: 9.56 kcal Atomic # 7 Polarization: -92.32 SS G_CDS: -4.46 Total: -96.78 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -0.33 Total: -44.82 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 1.88 Total: 41.57 kcal Total: -79.25 5.61 -73.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892997499.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.435 kcal (2) G-P(sol) polarization free energy of solvation -79.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds