Wall clock time and date at job start Tue Mar 31 2020 14:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35711 * 116.99832 * 2 1 4 4 C 1.41935 * 126.87692 * 179.97438 * 3 2 1 5 5 C 1.35272 * 103.95782 * 180.02562 * 4 3 2 6 6 C 1.50696 * 126.70864 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47034 * 89.99843 * 6 5 4 8 8 C 1.50706 * 109.47046 * 179.97438 * 7 6 5 9 9 O 1.20827 * 119.99923 * 0.02562 * 8 7 6 10 10 O 1.34233 * 119.99973 * 180.02562 * 8 7 6 11 11 C 1.45195 * 116.99678 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46784 * 179.97438 * 11 10 8 13 13 H 1.08993 * 109.41479 * 55.14134 * 12 11 10 14 14 C 1.52967 * 109.41433 * 175.00255 * 12 11 10 15 15 C 1.53232 * 109.40207 * 183.70517 * 14 12 11 16 16 C 1.51270 * 108.53674 * 305.36579 * 15 14 12 17 17 C 1.37873 * 120.85124 * 231.37392 * 16 15 14 18 18 N 1.31517 * 119.99937 * 164.54284 * 17 16 15 19 19 Si 1.86799 * 119.99928 * 344.54039 * 17 16 15 20 20 H 1.48501 * 109.47404 * 354.64230 * 19 17 16 21 21 H 1.48501 * 109.47045 * 114.64342 * 19 17 16 22 22 H 1.48503 * 109.47409 * 234.63922 * 19 17 16 23 23 C 1.51267 * 118.29737 * 51.35317 * 16 15 14 24 24 C 1.52957 * 109.41393 * 295.35287 * 12 11 10 25 25 O 1.34089 * 106.58139 * 0.26374 * 5 4 3 26 26 N 1.20915 * 111.71579 * 359.52441 * 25 5 4 27 27 H 1.09004 * 109.46767 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47142 * 299.99580 * 1 2 3 29 29 H 1.08998 * 109.47219 * 60.00190 * 1 2 3 30 30 H 1.07996 * 128.02120 * 0.02562 * 4 3 2 31 31 H 1.08998 * 109.47191 * 330.00035 * 6 5 4 32 32 H 1.09000 * 109.47406 * 209.99710 * 6 5 4 33 33 H 1.09006 * 109.47164 * 60.00709 * 7 6 5 34 34 H 1.08997 * 109.47807 * 300.00188 * 7 6 5 35 35 H 1.08993 * 109.47534 * 299.99654 * 11 10 8 36 36 H 1.09004 * 109.47546 * 60.00342 * 11 10 8 37 37 H 1.09005 * 109.47605 * 303.68192 * 14 12 11 38 38 H 1.09000 * 109.48295 * 63.72275 * 14 12 11 39 39 H 1.08994 * 109.62705 * 65.08735 * 15 14 12 40 40 H 1.09008 * 109.61970 * 185.65450 * 15 14 12 41 41 H 0.97001 * 119.99899 * 179.97438 * 18 17 16 42 42 H 1.08998 * 109.62742 * 68.36460 * 23 16 15 43 43 H 1.09002 * 109.62651 * 188.74369 * 23 16 15 44 44 H 1.09006 * 109.48248 * 296.27374 * 24 12 11 45 45 H 1.09001 * 109.48351 * 56.31621 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 3.4433 1.4527 0.0005 5 6 3.5396 2.8020 0.0009 6 6 4.8087 3.6146 0.0009 7 6 5.2380 3.8899 -1.4416 8 6 6.5069 4.7031 -1.4415 9 8 7.0158 5.0285 -0.3951 10 8 7.0717 5.0658 -2.6040 11 6 8.2922 5.8485 -2.5279 12 6 8.7845 6.1642 -3.9417 13 1 7.9888 6.6558 -4.5011 14 6 9.9982 7.0919 -3.8622 15 6 10.4343 7.4820 -5.2783 16 6 10.6676 6.2175 -6.0752 17 6 11.8445 6.0248 -6.7670 18 7 12.1655 4.8240 -7.1969 19 14 12.9830 7.4692 -7.0939 20 1 12.3390 8.7229 -6.6262 21 1 14.2608 7.2672 -6.3647 22 1 13.2545 7.5658 -8.5507 23 6 9.5767 5.1698 -6.0931 24 6 9.1715 4.8635 -4.6475 25 8 2.2849 3.2751 0.0065 26 7 1.4700 2.3819 0.0001 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 4.2446 0.7287 0.0006 31 1 5.5946 3.0608 0.5145 32 1 4.6349 4.5599 0.5150 33 1 4.4521 4.4438 -1.9552 34 1 5.4119 2.9447 -1.9557 35 1 8.0946 6.7789 -1.9955 36 1 9.0556 5.2806 -1.9960 37 1 9.7336 7.9894 -3.3030 38 1 10.8166 6.5775 -3.3584 39 1 9.6517 8.0744 -5.7523 40 1 11.3571 8.0603 -5.2309 41 1 12.9933 4.6885 -7.6840 42 1 8.7146 5.5481 -6.6426 43 1 9.9472 4.2636 -6.5723 44 1 10.0095 4.4018 -4.1251 45 1 8.3211 4.1816 -4.6449 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893024145.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:59 Heat of formation + Delta-G solvation = -84.121412 kcal Electronic energy + Delta-G solvation = -26319.789665 eV Core-core repulsion = 22305.621543 eV Total energy + Delta-G solvation = -4014.168123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.25698 -40.44676 -39.20520 -37.52922 -36.11884 -35.07888 -33.21571 -32.62787 -30.97550 -29.74149 -29.26162 -28.03094 -26.16392 -24.61184 -23.75830 -21.72506 -21.59610 -21.15097 -20.52665 -19.16344 -18.44729 -18.06000 -17.34699 -17.10097 -16.69958 -16.26371 -16.05643 -15.83509 -15.43591 -14.75659 -14.38667 -14.26246 -13.78322 -13.46843 -13.24298 -13.18152 -12.77960 -12.68906 -12.58326 -12.37313 -12.26590 -11.94435 -11.88262 -11.71206 -11.33033 -11.26100 -10.90259 -10.81465 -10.70410 -10.50764 -10.14210 -9.95584 -9.92069 -9.78569 -9.60099 -9.48559 -8.84709 -8.64909 -8.32789 -6.12112 -3.96763 0.99966 1.89491 2.19103 2.36614 2.54730 2.95276 3.25880 3.36641 3.39165 3.83063 4.31740 4.39312 4.39445 4.54569 4.64307 4.70435 4.72130 4.86146 5.01099 5.05211 5.11071 5.14736 5.34896 5.38157 5.39173 5.45904 5.58805 5.67253 5.96137 6.05325 6.29262 6.55302 6.58127 6.59575 6.72967 6.82864 6.92510 7.07699 7.11827 7.23437 7.42206 7.67434 7.74935 7.81574 7.85960 7.86476 8.42292 8.98979 9.55968 10.97771 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.029159 B = 0.001873 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.005971 B =14944.464182 C =15536.915457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.284 6.284 3 C 0.208 3.792 4 C -0.228 4.228 5 C 0.000 4.000 6 C -0.029 4.029 7 C -0.114 4.114 8 C 0.461 3.539 9 O -0.515 6.515 10 O -0.348 6.348 11 C 0.073 3.927 12 C -0.073 4.073 13 H 0.069 0.931 14 C -0.099 4.099 15 C -0.013 4.013 16 C -0.492 4.492 17 C 0.078 3.922 18 N -0.883 5.883 19 Si 0.878 3.122 20 H -0.262 1.262 21 H -0.284 1.284 22 H -0.286 1.286 23 C 0.009 3.991 24 C -0.101 4.101 25 O 0.102 5.898 26 N -0.409 5.409 27 H 0.106 0.894 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.181 0.819 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.034 0.966 38 H 0.055 0.945 39 H 0.014 0.986 40 H 0.033 0.967 41 H 0.263 0.737 42 H 0.002 0.998 43 H 0.054 0.946 44 H 0.048 0.952 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.806 -6.130 14.737 24.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.190 6.190 3 C 0.011 3.989 4 C -0.250 4.250 5 C -0.064 4.064 6 C -0.068 4.068 7 C -0.152 4.152 8 C 0.305 3.695 9 O -0.405 6.405 10 O -0.264 6.264 11 C -0.001 4.001 12 C -0.092 4.092 13 H 0.088 0.912 14 C -0.137 4.137 15 C -0.051 4.051 16 C -0.511 4.511 17 C -0.125 4.125 18 N -0.521 5.521 19 Si 0.706 3.294 20 H -0.186 1.186 21 H -0.210 1.210 22 H -0.212 1.212 23 C -0.029 4.029 24 C -0.139 4.139 25 O 0.041 5.959 26 N -0.136 5.136 27 H 0.124 0.876 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.198 0.802 31 H 0.130 0.870 32 H 0.121 0.879 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.033 0.967 40 H 0.052 0.948 41 H 0.073 0.927 42 H 0.020 0.980 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -19.645 -6.017 14.919 25.391 hybrid contribution 1.185 0.227 -0.123 1.213 sum -18.460 -5.789 14.797 24.356 Atomic orbital electron populations 1.23075 0.76771 1.04153 1.02374 1.86200 1.22636 1.20883 1.89326 1.22033 0.90966 0.85722 1.00224 1.21854 0.94393 0.95717 1.13035 1.24192 0.88193 0.93170 1.00815 1.19981 0.89055 1.00903 0.96819 1.21331 0.94089 1.01812 0.97998 1.23358 0.85821 0.78060 0.82306 1.90670 1.63492 1.53133 1.33160 1.86515 1.40787 1.65622 1.33447 1.23498 0.82359 0.93634 1.00569 1.21122 0.97890 0.98786 0.91402 0.91215 1.21545 0.95937 0.96223 1.00006 1.19740 0.96760 0.96663 0.91938 1.20020 1.00902 1.01039 1.29154 1.24828 0.96879 0.95288 0.95521 1.69921 1.23986 1.20434 1.37713 0.86788 0.80593 0.84148 0.77864 1.18626 1.21001 1.21229 1.19391 0.94566 0.97927 0.90978 1.21610 0.98292 0.93982 0.99981 1.84817 1.12201 1.30002 1.68878 1.74146 1.15615 0.96736 1.27111 0.87603 0.92275 0.92169 0.80191 0.87019 0.87870 0.86934 0.86850 0.91862 0.91385 0.94739 0.92668 0.96712 0.94850 0.92718 0.97977 0.92707 0.93288 0.94637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.73 101.05 1.08 1.28 16 2 O -0.28 -2.73 10.57 -18.84 -0.20 -2.93 16 3 C 0.21 2.14 8.01 -16.66 -0.13 2.01 16 4 C -0.23 -1.91 11.11 -39.22 -0.44 -2.35 16 5 C 0.00 0.00 6.73 -35.37 -0.24 -0.24 16 6 C -0.03 -0.20 5.07 -27.89 -0.14 -0.35 16 7 C -0.11 -0.90 5.79 -27.88 -0.16 -1.06 16 8 C 0.46 5.69 7.96 36.01 0.29 5.97 16 9 O -0.52 -7.50 15.73 -18.75 -0.29 -7.80 16 10 O -0.35 -5.13 9.68 -39.27 -0.38 -5.51 16 11 C 0.07 1.15 4.84 37.16 0.18 1.33 16 12 C -0.07 -1.36 2.33 -90.66 -0.21 -1.57 16 13 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 14 C -0.10 -1.93 5.22 -26.63 -0.14 -2.07 16 15 C -0.01 -0.30 5.47 -27.48 -0.15 -0.46 16 16 C -0.49 -12.78 5.44 -98.92 -0.54 -13.32 16 17 C 0.08 2.11 5.43 -17.82 -0.10 2.01 16 18 N -0.88 -25.19 12.81 55.43 0.71 -24.48 16 19 Si 0.88 20.65 27.63 -169.99 -4.70 15.96 16 20 H -0.26 -5.92 6.14 56.52 0.35 -5.57 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.01 0.21 5.99 -27.49 -0.16 0.05 16 24 C -0.10 -2.11 5.15 -26.63 -0.14 -2.25 16 25 O 0.10 1.01 11.19 17.05 0.19 1.20 16 26 N -0.41 -4.51 11.54 30.38 0.35 -4.16 16 27 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.11 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.10 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 36 H 0.07 1.10 8.13 -51.93 -0.42 0.67 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.03 0.75 5.02 -51.92 -0.26 0.49 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 43 H 0.05 1.48 7.11 -51.93 -0.37 1.11 16 44 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.03 0.69 7.71 -51.93 -0.40 0.28 16 LS Contribution 372.99 15.07 5.62 5.62 Total: -1.00 -31.07 372.99 -6.67 -37.74 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -6.98 Total: -4.66 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -1.00 Total: -10.99 kcal Atomic # 7 Polarization: -29.69 SS G_CDS: 1.06 Total: -28.63 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.68 Total: -15.03 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.70 Total: 15.96 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.07 -6.67 -37.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893024145.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.377 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds