Wall clock time and date at job start Tue Mar 31 2020 14:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35711 * 116.99832 * 2 1 4 4 C 1.41935 * 126.87692 * 179.97438 * 3 2 1 5 5 C 1.35272 * 103.95782 * 180.02562 * 4 3 2 6 6 C 1.50696 * 126.70864 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47034 * 89.99843 * 6 5 4 8 8 C 1.50706 * 109.47046 * 179.97438 * 7 6 5 9 9 O 1.20827 * 119.99923 * 0.02562 * 8 7 6 10 10 O 1.34233 * 119.99973 * 180.02562 * 8 7 6 11 11 C 1.45195 * 116.99678 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46784 * 179.97438 * 11 10 8 13 13 H 1.08993 * 109.41479 * 55.14134 * 12 11 10 14 14 C 1.52967 * 109.41433 * 175.00255 * 12 11 10 15 15 C 1.53232 * 109.40207 * 183.70517 * 14 12 11 16 16 C 1.51270 * 108.53674 * 305.36579 * 15 14 12 17 17 C 1.37873 * 120.85124 * 231.37392 * 16 15 14 18 18 N 1.31517 * 119.99937 * 164.54284 * 17 16 15 19 19 Si 1.86799 * 119.99928 * 344.54039 * 17 16 15 20 20 H 1.48501 * 109.47404 * 354.64230 * 19 17 16 21 21 H 1.48501 * 109.47045 * 114.64342 * 19 17 16 22 22 H 1.48503 * 109.47409 * 234.63922 * 19 17 16 23 23 C 1.51267 * 118.29737 * 51.35317 * 16 15 14 24 24 C 1.52957 * 109.41393 * 295.35287 * 12 11 10 25 25 O 1.34089 * 106.58139 * 0.26374 * 5 4 3 26 26 N 1.20915 * 111.71579 * 359.52441 * 25 5 4 27 27 H 1.09004 * 109.46767 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47142 * 299.99580 * 1 2 3 29 29 H 1.08998 * 109.47219 * 60.00190 * 1 2 3 30 30 H 1.07996 * 128.02120 * 0.02562 * 4 3 2 31 31 H 1.08998 * 109.47191 * 330.00035 * 6 5 4 32 32 H 1.09000 * 109.47406 * 209.99710 * 6 5 4 33 33 H 1.09006 * 109.47164 * 60.00709 * 7 6 5 34 34 H 1.08997 * 109.47807 * 300.00188 * 7 6 5 35 35 H 1.08993 * 109.47534 * 299.99654 * 11 10 8 36 36 H 1.09004 * 109.47546 * 60.00342 * 11 10 8 37 37 H 1.09005 * 109.47605 * 303.68192 * 14 12 11 38 38 H 1.09000 * 109.48295 * 63.72275 * 14 12 11 39 39 H 1.08994 * 109.62705 * 65.08735 * 15 14 12 40 40 H 1.09008 * 109.61970 * 185.65450 * 15 14 12 41 41 H 0.97001 * 119.99899 * 179.97438 * 18 17 16 42 42 H 1.08998 * 109.62742 * 68.36460 * 23 16 15 43 43 H 1.09002 * 109.62651 * 188.74369 * 23 16 15 44 44 H 1.09006 * 109.48248 * 296.27374 * 24 12 11 45 45 H 1.09001 * 109.48351 * 56.31621 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 3.4433 1.4527 0.0005 5 6 3.5396 2.8020 0.0009 6 6 4.8087 3.6146 0.0009 7 6 5.2380 3.8899 -1.4416 8 6 6.5069 4.7031 -1.4415 9 8 7.0158 5.0285 -0.3951 10 8 7.0717 5.0658 -2.6040 11 6 8.2922 5.8485 -2.5279 12 6 8.7845 6.1642 -3.9417 13 1 7.9888 6.6558 -4.5011 14 6 9.9982 7.0919 -3.8622 15 6 10.4343 7.4820 -5.2783 16 6 10.6676 6.2175 -6.0752 17 6 11.8445 6.0248 -6.7670 18 7 12.1655 4.8240 -7.1969 19 14 12.9830 7.4692 -7.0939 20 1 12.3390 8.7229 -6.6262 21 1 14.2608 7.2672 -6.3647 22 1 13.2545 7.5658 -8.5507 23 6 9.5767 5.1698 -6.0931 24 6 9.1715 4.8635 -4.6475 25 8 2.2849 3.2751 0.0065 26 7 1.4700 2.3819 0.0001 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 4.2446 0.7287 0.0006 31 1 5.5946 3.0608 0.5145 32 1 4.6349 4.5599 0.5150 33 1 4.4521 4.4438 -1.9552 34 1 5.4119 2.9447 -1.9557 35 1 8.0946 6.7789 -1.9955 36 1 9.0556 5.2806 -1.9960 37 1 9.7336 7.9894 -3.3030 38 1 10.8166 6.5775 -3.3584 39 1 9.6517 8.0744 -5.7523 40 1 11.3571 8.0603 -5.2309 41 1 12.9933 4.6885 -7.6840 42 1 8.7146 5.5481 -6.6426 43 1 9.9472 4.2636 -6.5723 44 1 10.0095 4.4018 -4.1251 45 1 8.3211 4.1816 -4.6449 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893024145.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:59 Heat of formation + Delta-G solvation = -102.418084 kcal Electronic energy + Delta-G solvation = -26320.583069 eV Core-core repulsion = 22305.621543 eV Total energy + Delta-G solvation = -4014.961526 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.96427 -41.49056 -39.85127 -38.99607 -37.39404 -35.79163 -34.49948 -33.89284 -31.83394 -31.40423 -30.95140 -28.58683 -27.27309 -25.80170 -24.46136 -23.41800 -22.96480 -22.21165 -21.52225 -20.78346 -19.20146 -18.78582 -18.29510 -18.07289 -17.76605 -17.53542 -17.23503 -16.46936 -16.32013 -16.09339 -15.59607 -15.34777 -14.96969 -14.73604 -14.62596 -14.28386 -14.16191 -13.88618 -13.68979 -13.36613 -13.21043 -13.10522 -12.90471 -12.84855 -12.69650 -12.53206 -12.46501 -12.28190 -11.95044 -11.74094 -11.61299 -11.54244 -11.35246 -11.26821 -10.71538 -10.57047 -10.51357 -10.30810 -10.29166 -8.16009 -6.03415 0.34025 1.19833 1.24337 1.38924 1.44855 1.54137 1.68249 1.78129 2.21629 2.44306 3.10262 3.16966 3.57767 3.79780 3.89957 3.93809 3.99469 4.04314 4.16233 4.23003 4.23488 4.24283 4.39744 4.55311 4.58366 4.60398 4.63065 4.77276 4.82995 4.83150 4.90232 5.04790 5.08360 5.10599 5.21813 5.33234 5.38717 5.51104 5.57875 5.65537 5.70502 5.82523 5.93931 5.95521 6.42354 6.77804 7.01255 7.18379 7.51334 8.95631 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.029159 B = 0.001873 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.005971 B =14944.464182 C =15536.915457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.297 6.297 3 C 0.193 3.807 4 C -0.230 4.230 5 C 0.009 3.991 6 C -0.022 4.022 7 C -0.106 4.106 8 C 0.463 3.537 9 O -0.538 6.538 10 O -0.359 6.359 11 C 0.081 3.919 12 C -0.067 4.067 13 H 0.072 0.928 14 C -0.096 4.096 15 C -0.018 4.018 16 C -0.503 4.503 17 C 0.020 3.980 18 N -0.928 5.928 19 Si 0.934 3.066 20 H -0.243 1.243 21 H -0.284 1.284 22 H -0.290 1.290 23 C 0.004 3.996 24 C -0.091 4.091 25 O 0.092 5.908 26 N -0.431 5.431 27 H 0.133 0.867 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.202 0.798 31 H 0.121 0.879 32 H 0.106 0.894 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.021 0.979 40 H 0.034 0.966 41 H 0.261 0.739 42 H 0.001 0.999 43 H 0.019 0.981 44 H 0.032 0.968 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.774 -5.233 16.167 26.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.204 6.204 3 C -0.004 4.004 4 C -0.251 4.251 5 C -0.054 4.054 6 C -0.060 4.060 7 C -0.144 4.144 8 C 0.307 3.693 9 O -0.428 6.428 10 O -0.275 6.275 11 C 0.007 3.993 12 C -0.085 4.085 13 H 0.090 0.910 14 C -0.134 4.134 15 C -0.056 4.056 16 C -0.522 4.522 17 C -0.178 4.178 18 N -0.568 5.568 19 Si 0.760 3.240 20 H -0.167 1.167 21 H -0.210 1.210 22 H -0.217 1.217 23 C -0.034 4.034 24 C -0.128 4.128 25 O 0.032 5.968 26 N -0.159 5.159 27 H 0.151 0.849 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.219 0.781 31 H 0.139 0.861 32 H 0.124 0.876 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.040 0.960 40 H 0.052 0.948 41 H 0.070 0.930 42 H 0.020 0.980 43 H 0.038 0.962 44 H 0.051 0.949 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -20.634 -5.103 16.363 26.824 hybrid contribution 1.387 -0.112 -0.565 1.502 sum -19.247 -5.215 15.797 25.440 Atomic orbital electron populations 1.23295 0.75404 1.05948 1.02164 1.86187 1.24122 1.20755 1.89287 1.22402 0.91907 0.85824 1.00299 1.22191 0.94171 0.96254 1.12533 1.24330 0.87826 0.93163 1.00114 1.19972 0.88577 1.01065 0.96368 1.21422 0.92082 1.01942 0.98947 1.24109 0.86394 0.77571 0.81189 1.90665 1.64356 1.54126 1.33693 1.86508 1.40309 1.65774 1.34933 1.23189 0.83057 0.94606 0.98407 1.20962 0.97660 0.96956 0.92952 0.90988 1.21463 0.96091 0.97809 0.98067 1.19791 0.97154 0.95130 0.93487 1.20677 1.00671 1.02396 1.28438 1.25631 0.98922 0.97341 0.95916 1.70056 1.24729 1.22432 1.39545 0.85890 0.78778 0.82017 0.77314 1.16677 1.21010 1.21659 1.19385 0.94360 0.96390 0.93258 1.21438 0.98152 0.95860 0.97397 1.84782 1.12873 1.29994 1.69114 1.74134 1.16377 0.97224 1.28135 0.84862 0.92388 0.92455 0.78128 0.86097 0.87568 0.85381 0.85152 0.90305 0.91801 0.91351 0.93427 0.96048 0.94786 0.92993 0.98034 0.96204 0.94894 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.73 113.37 1.22 1.53 16 2 O -0.30 -5.43 10.57 -90.32 -0.95 -6.39 16 3 C 0.19 3.78 8.01 85.79 0.69 4.47 16 4 C -0.23 -3.42 11.11 22.50 0.25 -3.17 16 5 C 0.01 0.13 6.73 25.00 0.17 0.30 16 6 C -0.02 -0.25 5.07 29.85 0.15 -0.09 16 7 C -0.11 -1.36 5.79 29.85 0.17 -1.19 16 8 C 0.46 10.19 7.96 71.24 0.57 10.75 16 9 O -0.54 -14.39 15.73 21.96 0.35 -14.05 16 10 O -0.36 -9.67 9.68 -51.45 -0.50 -10.17 16 11 C 0.08 2.37 4.84 71.98 0.35 2.71 16 12 C -0.07 -2.33 2.33 -10.82 -0.03 -2.36 16 13 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 14 C -0.10 -3.52 5.22 30.66 0.16 -3.36 16 15 C -0.02 -0.79 5.47 30.11 0.16 -0.62 16 16 C -0.50 -26.10 5.44 -16.17 -0.09 -26.19 16 17 C 0.02 1.10 5.43 84.65 0.46 1.56 16 18 N -0.93 -54.58 12.81 21.45 0.27 -54.31 16 19 Si 0.93 42.50 27.63 68.60 1.90 44.40 16 20 H -0.24 -10.23 6.14 99.48 0.61 -9.61 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 22 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 23 C 0.00 0.18 5.99 30.11 0.18 0.36 16 24 C -0.09 -3.75 5.15 30.66 0.16 -3.59 16 25 O 0.09 1.73 11.19 71.18 0.80 2.52 16 26 N -0.43 -9.17 11.54 -172.60 -1.99 -11.16 16 27 H 0.13 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.20 1.96 8.06 -2.91 -0.02 1.94 16 31 H 0.12 1.19 8.10 -2.39 -0.02 1.17 16 32 H 0.11 1.18 8.10 -2.39 -0.02 1.16 16 33 H 0.13 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.08 2.09 8.13 -2.39 -0.02 2.07 16 36 H 0.06 1.93 8.13 -2.39 -0.02 1.91 16 37 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 38 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.03 1.46 5.02 -2.38 -0.01 1.44 16 41 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 42 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 43 H 0.02 1.09 7.11 -2.39 -0.02 1.08 16 44 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 45 H 0.05 1.88 7.71 -2.39 -0.02 1.86 16 Total: -1.00 -67.87 372.99 5.33 -62.54 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: 0.89 Total: 5.50 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: 4.57 Total: -18.89 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: -1.72 Total: -65.47 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.31 Total: -28.08 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.90 Total: 44.40 kcal Total: -67.87 5.33 -62.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893024145.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.875 kcal (2) G-P(sol) polarization free energy of solvation -67.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds