Wall clock time and date at job start Tue Mar 31 2020 14:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21284 * 120.00113 * 2 1 4 4 N 1.34778 * 119.99886 * 179.97438 * 2 1 3 5 5 C 1.46502 * 120.00033 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47029 * 60.00077 * 5 4 2 7 7 C 1.52998 * 109.47093 * 300.00296 * 5 4 2 8 8 C 1.53003 * 109.47023 * 180.02562 * 5 4 2 9 9 O 1.45200 * 109.46730 * 180.02562 * 8 5 4 10 10 C 1.34756 * 116.99417 * 180.02562 * 9 8 5 11 11 O 1.21520 * 120.00292 * 359.97438 * 10 9 8 12 12 C 1.47291 * 119.99648 * 180.02562 * 10 9 8 13 13 C 1.41344 * 126.42578 * 0.03822 * 12 10 9 14 14 N 1.30427 * 108.01038 * 179.68626 * 13 12 10 15 15 N 1.39939 * 108.92113 * 0.44175 * 14 13 12 16 16 C 1.46491 * 125.74450 * 179.81281 * 15 14 13 17 17 C 1.50702 * 109.46957 * 269.69080 * 16 15 14 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72213 * 17 16 15 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48501 * 109.47188 * 90.00793 * 21 19 17 23 23 H 1.48501 * 109.47085 * 210.00372 * 21 19 17 24 24 H 1.48498 * 109.47634 * 330.00608 * 21 19 17 25 25 C 1.34222 * 108.50592 * 359.54733 * 15 14 13 26 26 C 1.50707 * 126.29232 * 180.23890 * 25 15 14 27 27 H 1.08994 * 109.47674 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46828 * 300.00389 * 1 2 3 29 29 H 1.09004 * 109.47211 * 59.99952 * 1 2 3 30 30 H 0.97002 * 119.99797 * 0.02562 * 4 2 1 31 31 H 1.08997 * 109.46904 * 180.02562 * 6 5 4 32 32 H 1.08999 * 109.47137 * 299.99944 * 6 5 4 33 33 H 1.09002 * 109.46764 * 59.99656 * 6 5 4 34 34 H 1.09001 * 109.46864 * 299.99726 * 7 5 4 35 35 H 1.08999 * 109.47353 * 59.99884 * 7 5 4 36 36 H 1.09002 * 109.46887 * 179.97438 * 7 5 4 37 37 H 1.08996 * 109.46514 * 60.00074 * 8 5 4 38 38 H 1.08996 * 109.46848 * 300.00102 * 8 5 4 39 39 H 1.08000 * 125.99491 * 359.96182 * 13 12 10 40 40 H 1.09004 * 109.47166 * 149.69346 * 16 15 14 41 41 H 1.08994 * 109.47507 * 29.69052 * 16 15 14 42 42 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.46792 * 89.99868 * 26 25 15 44 44 H 1.08995 * 109.47272 * 209.99987 * 26 25 15 45 45 H 1.08999 * 109.47175 * 330.00300 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6459 -1.1673 0.0000 6 6 4.1564 -0.4452 1.2485 7 6 4.1554 -0.4468 -1.2499 8 6 4.1558 -2.6098 0.0001 9 8 5.6078 -2.6098 0.0001 10 6 6.2195 -3.8105 -0.0003 11 8 5.5576 -4.8296 -0.0002 12 6 7.6904 -3.8876 0.0003 13 6 8.5881 -2.7958 0.0021 14 7 9.8022 -3.2721 0.0088 15 7 9.7414 -4.6701 0.0015 16 6 10.8920 -5.5768 0.0018 17 6 11.2878 -5.8865 -1.4190 18 1 10.7376 -5.4511 -2.2400 19 6 12.3564 -6.7208 -1.6707 20 7 13.0266 -7.2506 -0.6709 21 14 12.8517 -7.0985 -3.4317 22 1 13.8456 -6.0958 -3.8923 23 1 13.4511 -8.4556 -3.4971 24 1 11.6525 -7.0443 -4.3059 25 6 8.4512 -5.0404 0.0000 26 6 7.9289 -6.4540 -0.0022 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.6958 -2.0073 0.0005 31 1 5.2463 -0.4448 1.2479 32 1 3.7930 0.5825 1.2480 33 1 3.7933 -0.9584 2.1390 34 1 3.7917 -0.9612 -2.1394 35 1 3.7921 0.5809 -1.2505 36 1 5.2454 -0.4465 -1.2501 37 1 3.7921 -3.1237 -0.8897 38 1 3.7928 -3.1234 0.8903 39 1 8.3162 -1.7506 0.0027 40 1 10.6260 -6.5012 0.5145 41 1 11.7277 -5.1032 0.5167 42 1 13.7782 -7.8379 -0.8480 43 1 7.8022 -6.7961 1.0250 44 1 6.9686 -6.4857 -0.5168 45 1 8.6382 -7.1026 -0.5163 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893446649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:54 Heat of formation + Delta-G solvation = -62.992312 kcal Electronic energy + Delta-G solvation = -27140.331857 eV Core-core repulsion = 23159.372711 eV Total energy + Delta-G solvation = -3980.959145 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.96703 -40.47639 -39.55647 -37.00350 -35.52432 -33.95790 -32.57094 -32.16702 -31.29690 -29.37622 -28.09941 -27.40767 -26.97163 -26.56750 -23.66763 -22.61312 -21.44921 -20.28171 -19.91792 -19.00130 -17.56524 -17.40992 -16.83850 -16.30422 -16.08779 -15.99836 -15.54597 -15.10181 -14.64311 -14.48970 -14.07909 -13.97487 -13.89844 -13.42511 -13.08975 -12.94838 -12.89872 -12.60925 -12.59549 -12.42123 -12.24356 -12.14335 -11.86264 -11.80954 -11.58438 -11.39816 -11.20231 -11.16351 -10.93404 -10.61057 -10.46839 -10.33979 -9.99382 -9.95062 -9.83872 -9.44074 -8.75532 -8.68159 -8.11864 -6.38257 -4.46576 1.86078 2.32109 2.36579 2.67800 3.10929 3.15827 3.22498 3.26839 3.44588 3.61929 4.20602 4.24868 4.55293 4.57145 4.77524 4.81525 4.96043 5.01281 5.08116 5.12140 5.25073 5.29500 5.36512 5.42875 5.58013 5.63433 5.69952 5.72516 5.75729 5.92027 5.96623 6.14177 6.19232 6.24798 6.31549 6.41505 6.64511 6.72494 6.83909 7.09746 7.17096 7.48990 7.67997 7.71561 7.90401 8.10473 8.30798 8.58961 9.20760 10.69893 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.028885 B = 0.002257 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.141947 B =12401.787142 C =12462.401435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.516 3.484 3 O -0.539 6.539 4 N -0.723 5.723 5 C 0.174 3.826 6 C -0.161 4.161 7 C -0.161 4.161 8 C 0.070 3.930 9 O -0.345 6.345 10 C 0.553 3.447 11 O -0.530 6.530 12 C -0.319 4.319 13 C 0.081 3.919 14 N -0.296 5.296 15 N -0.310 5.310 16 C 0.250 3.750 17 C -0.543 4.543 18 H 0.066 0.934 19 C 0.068 3.932 20 N -0.888 5.888 21 Si 0.909 3.091 22 H -0.276 1.276 23 H -0.282 1.282 24 H -0.271 1.271 25 C 0.173 3.827 26 C -0.101 4.101 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.400 0.600 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.185 0.815 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.270 0.730 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.464 8.604 2.636 24.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.303 3.697 3 O -0.416 6.416 4 N -0.377 5.377 5 C 0.088 3.912 6 C -0.219 4.219 7 C -0.219 4.219 8 C -0.005 4.005 9 O -0.261 6.261 10 C 0.400 3.600 11 O -0.420 6.420 12 C -0.332 4.332 13 C -0.106 4.106 14 N -0.116 5.116 15 N -0.086 5.086 16 C 0.133 3.867 17 C -0.581 4.581 18 H 0.084 0.916 19 C -0.136 4.136 20 N -0.526 5.526 21 Si 0.736 3.264 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.196 1.196 25 C 0.035 3.965 26 C -0.159 4.159 27 H 0.094 0.906 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.235 0.765 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.202 0.798 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.113 0.887 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.631 9.158 2.700 22.734 hybrid contribution -0.822 -0.991 -0.917 1.580 sum -21.453 8.168 1.784 23.024 Atomic orbital electron populations 1.21863 0.91630 1.04238 1.05352 1.20721 0.90407 0.83292 0.75282 1.90689 1.70335 1.31420 1.49118 1.46153 1.06522 1.09051 1.76004 1.20192 0.79278 0.93776 0.97924 1.22187 1.02465 1.01959 0.95264 1.22192 1.02502 1.01963 0.95275 1.22925 0.78829 0.95844 1.02884 1.86501 1.20854 1.33562 1.85213 1.20058 0.87680 0.80482 0.71738 1.90759 1.66657 1.35764 1.48859 1.18790 0.89540 0.93386 1.31498 1.23926 0.89386 0.99357 0.97954 1.77227 1.21436 0.89165 1.23724 1.49442 1.06076 1.04848 1.48215 1.19913 0.80759 0.86425 0.99599 1.21245 1.15893 1.30030 0.90910 0.91576 1.24930 0.95340 0.94998 0.98375 1.69913 1.20262 1.31229 1.31151 0.86307 0.79002 0.77792 0.83347 1.20189 1.20771 1.19579 1.21451 0.85029 0.96372 0.93642 1.20667 1.02718 0.88974 1.03529 0.90593 0.88700 0.88702 0.76549 0.90527 0.90304 0.92834 0.92806 0.90308 0.90506 0.90863 0.90886 0.79804 0.92426 0.92258 0.92045 0.90179 0.88696 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.74 10.39 36.00 0.37 -0.36 16 2 C 0.52 4.31 7.36 -10.99 -0.08 4.23 16 3 O -0.54 -6.70 13.31 5.55 0.07 -6.63 16 4 N -0.72 -5.29 5.11 -47.60 -0.24 -5.53 16 5 C 0.17 1.67 0.89 -131.82 -0.12 1.55 16 6 C -0.16 -1.67 8.26 37.16 0.31 -1.36 16 7 C -0.16 -1.70 8.26 37.16 0.31 -1.40 16 8 C 0.07 0.74 4.45 37.16 0.17 0.91 16 9 O -0.35 -4.67 8.73 -40.64 -0.35 -5.02 16 10 C 0.55 9.05 7.95 34.41 0.27 9.32 16 11 O -0.53 -9.26 14.63 -19.28 -0.28 -9.54 16 12 C -0.32 -5.80 6.13 -105.08 -0.64 -6.44 16 13 C 0.08 1.45 11.87 -16.97 -0.20 1.25 16 14 N -0.30 -6.34 12.50 30.87 0.39 -5.95 16 15 N -0.31 -6.85 3.56 -57.77 -0.21 -7.06 16 16 C 0.25 6.06 5.78 -5.20 -0.03 6.03 16 17 C -0.54 -14.30 9.39 -34.44 -0.32 -14.62 16 18 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 19 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 20 N -0.89 -24.13 13.29 55.43 0.74 -23.39 16 21 Si 0.91 20.49 29.54 -169.99 -5.02 15.47 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 25 C 0.17 3.41 7.01 -81.59 -0.57 2.84 16 26 C -0.10 -1.71 9.34 36.01 0.34 -1.38 16 27 H 0.08 0.15 7.91 -51.93 -0.41 -0.26 16 28 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.40 1.81 8.31 -40.82 -0.34 1.47 16 31 H 0.08 0.82 7.68 -51.93 -0.40 0.42 16 32 H 0.08 0.92 6.17 -51.93 -0.32 0.60 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.93 6.17 -51.93 -0.32 0.61 16 36 H 0.08 0.84 7.68 -51.93 -0.40 0.44 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.19 2.57 8.06 -52.49 -0.42 2.15 16 40 H 0.06 1.38 7.62 -51.93 -0.40 0.98 16 41 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 42 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.09 1.56 6.51 -51.93 -0.34 1.22 16 45 H 0.09 1.54 7.70 -51.93 -0.40 1.14 16 LS Contribution 379.55 15.07 5.72 5.72 Total: -1.00 -31.47 379.55 -6.16 -37.63 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.67 Total: 2.04 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -0.30 Total: 2.26 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.67 Total: -41.93 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.56 Total: -21.19 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.47 -6.16 -37.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893446649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.361 kcal (2) G-P(sol) polarization free energy of solvation -31.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds