Wall clock time and date at job start Tue Mar 31 2020 14:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21284 * 120.00113 * 2 1 4 4 N 1.34778 * 119.99886 * 179.97438 * 2 1 3 5 5 C 1.46502 * 120.00033 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47029 * 60.00077 * 5 4 2 7 7 C 1.52998 * 109.47093 * 300.00296 * 5 4 2 8 8 C 1.53003 * 109.47023 * 180.02562 * 5 4 2 9 9 O 1.45200 * 109.46730 * 180.02562 * 8 5 4 10 10 C 1.34756 * 116.99417 * 180.02562 * 9 8 5 11 11 O 1.21520 * 120.00292 * 359.97438 * 10 9 8 12 12 C 1.47291 * 119.99648 * 180.02562 * 10 9 8 13 13 C 1.41344 * 126.42578 * 0.03822 * 12 10 9 14 14 N 1.30427 * 108.01038 * 179.68626 * 13 12 10 15 15 N 1.39939 * 108.92113 * 0.44175 * 14 13 12 16 16 C 1.46491 * 125.74450 * 179.81281 * 15 14 13 17 17 C 1.50702 * 109.46957 * 269.69080 * 16 15 14 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72213 * 17 16 15 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48501 * 109.47188 * 90.00793 * 21 19 17 23 23 H 1.48501 * 109.47085 * 210.00372 * 21 19 17 24 24 H 1.48498 * 109.47634 * 330.00608 * 21 19 17 25 25 C 1.34222 * 108.50592 * 359.54733 * 15 14 13 26 26 C 1.50707 * 126.29232 * 180.23890 * 25 15 14 27 27 H 1.08994 * 109.47674 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46828 * 300.00389 * 1 2 3 29 29 H 1.09004 * 109.47211 * 59.99952 * 1 2 3 30 30 H 0.97002 * 119.99797 * 0.02562 * 4 2 1 31 31 H 1.08997 * 109.46904 * 180.02562 * 6 5 4 32 32 H 1.08999 * 109.47137 * 299.99944 * 6 5 4 33 33 H 1.09002 * 109.46764 * 59.99656 * 6 5 4 34 34 H 1.09001 * 109.46864 * 299.99726 * 7 5 4 35 35 H 1.08999 * 109.47353 * 59.99884 * 7 5 4 36 36 H 1.09002 * 109.46887 * 179.97438 * 7 5 4 37 37 H 1.08996 * 109.46514 * 60.00074 * 8 5 4 38 38 H 1.08996 * 109.46848 * 300.00102 * 8 5 4 39 39 H 1.08000 * 125.99491 * 359.96182 * 13 12 10 40 40 H 1.09004 * 109.47166 * 149.69346 * 16 15 14 41 41 H 1.08994 * 109.47507 * 29.69052 * 16 15 14 42 42 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.46792 * 89.99868 * 26 25 15 44 44 H 1.08995 * 109.47272 * 209.99987 * 26 25 15 45 45 H 1.08999 * 109.47175 * 330.00300 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6459 -1.1673 0.0000 6 6 4.1564 -0.4452 1.2485 7 6 4.1554 -0.4468 -1.2499 8 6 4.1558 -2.6098 0.0001 9 8 5.6078 -2.6098 0.0001 10 6 6.2195 -3.8105 -0.0003 11 8 5.5576 -4.8296 -0.0002 12 6 7.6904 -3.8876 0.0003 13 6 8.5881 -2.7958 0.0021 14 7 9.8022 -3.2721 0.0088 15 7 9.7414 -4.6701 0.0015 16 6 10.8920 -5.5768 0.0018 17 6 11.2878 -5.8865 -1.4190 18 1 10.7376 -5.4511 -2.2400 19 6 12.3564 -6.7208 -1.6707 20 7 13.0266 -7.2506 -0.6709 21 14 12.8517 -7.0985 -3.4317 22 1 13.8456 -6.0958 -3.8923 23 1 13.4511 -8.4556 -3.4971 24 1 11.6525 -7.0443 -4.3059 25 6 8.4512 -5.0404 0.0000 26 6 7.9289 -6.4540 -0.0022 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.6958 -2.0073 0.0005 31 1 5.2463 -0.4448 1.2479 32 1 3.7930 0.5825 1.2480 33 1 3.7933 -0.9584 2.1390 34 1 3.7917 -0.9612 -2.1394 35 1 3.7921 0.5809 -1.2505 36 1 5.2454 -0.4465 -1.2501 37 1 3.7921 -3.1237 -0.8897 38 1 3.7928 -3.1234 0.8903 39 1 8.3162 -1.7506 0.0027 40 1 10.6260 -6.5012 0.5145 41 1 11.7277 -5.1032 0.5167 42 1 13.7782 -7.8379 -0.8480 43 1 7.8022 -6.7961 1.0250 44 1 6.9686 -6.4857 -0.5168 45 1 8.6382 -7.1026 -0.5163 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893446649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:53 Heat of formation + Delta-G solvation = -82.763701 kcal Electronic energy + Delta-G solvation = -27141.189208 eV Core-core repulsion = 23159.372711 eV Total energy + Delta-G solvation = -3981.816497 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.42879 -41.36891 -40.64691 -38.01167 -36.53426 -35.82977 -33.89930 -33.26160 -32.84321 -29.92244 -29.53395 -28.51050 -28.25573 -27.72296 -25.45506 -23.95436 -22.37259 -21.58840 -20.68064 -20.48433 -18.93885 -18.72668 -18.19781 -17.41934 -17.34891 -16.90955 -16.60995 -16.24813 -16.17782 -16.01487 -15.15997 -15.03233 -14.75973 -14.72895 -14.35078 -14.26599 -13.82969 -13.65379 -13.64659 -13.61648 -13.45947 -13.19468 -13.13424 -12.99748 -12.92521 -12.72481 -12.61887 -12.32280 -12.21342 -12.08512 -11.86699 -11.80430 -11.62724 -11.30039 -10.76683 -10.65485 -10.32172 -10.15421 -9.65971 -8.38671 -6.54767 0.43585 1.18869 1.31248 1.37684 1.39445 1.49944 1.69204 1.76544 2.24430 2.32343 2.47865 2.94081 3.44433 3.67214 3.75114 3.78423 3.95205 4.00175 4.03873 4.17269 4.36083 4.46528 4.53029 4.56443 4.64567 4.71525 4.76693 4.78612 4.82466 4.86929 4.91255 4.91512 4.99536 5.11534 5.15440 5.28451 5.33421 5.40183 5.48421 5.53249 5.61335 5.73429 5.97382 6.53660 6.61148 6.73119 6.89065 7.16428 7.31034 8.69291 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.028885 B = 0.002257 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.141947 B =12401.787142 C =12462.401435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.509 3.491 3 O -0.585 6.585 4 N -0.712 5.712 5 C 0.179 3.821 6 C -0.157 4.157 7 C -0.158 4.158 8 C 0.070 3.930 9 O -0.341 6.341 10 C 0.562 3.438 11 O -0.539 6.539 12 C -0.321 4.321 13 C 0.097 3.903 14 N -0.337 5.337 15 N -0.334 5.334 16 C 0.266 3.734 17 C -0.556 4.556 18 H 0.053 0.947 19 C 0.025 3.975 20 N -0.915 5.915 21 Si 0.971 3.029 22 H -0.274 1.274 23 H -0.271 1.271 24 H -0.269 1.269 25 C 0.161 3.839 26 C -0.094 4.094 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.416 0.584 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.222 0.778 40 H 0.056 0.944 41 H 0.033 0.967 42 H 0.275 0.725 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.719 8.339 2.075 26.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.299 3.701 3 O -0.465 6.465 4 N -0.368 5.368 5 C 0.092 3.908 6 C -0.215 4.215 7 C -0.216 4.216 8 C -0.005 4.005 9 O -0.257 6.257 10 C 0.409 3.591 11 O -0.431 6.431 12 C -0.334 4.334 13 C -0.090 4.090 14 N -0.156 5.156 15 N -0.110 5.110 16 C 0.147 3.853 17 C -0.594 4.594 18 H 0.071 0.929 19 C -0.177 4.177 20 N -0.553 5.553 21 Si 0.794 3.206 22 H -0.200 1.200 23 H -0.196 1.196 24 H -0.193 1.193 25 C 0.025 3.975 26 C -0.152 4.152 27 H 0.123 0.877 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.254 0.746 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.238 0.762 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.084 0.916 43 H 0.117 0.883 44 H 0.121 0.879 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.933 8.879 2.147 24.685 hybrid contribution -0.254 -0.811 -0.700 1.101 sum -23.186 8.068 1.446 24.592 Atomic orbital electron populations 1.21881 0.88168 1.06354 1.05875 1.21498 0.92021 0.82600 0.73998 1.90677 1.71555 1.33052 1.51200 1.46049 1.05483 1.09861 1.75369 1.20025 0.80741 0.92945 0.97057 1.22133 1.02074 1.01300 0.96027 1.22141 1.02065 1.01339 0.96088 1.23147 0.76855 0.96477 1.04008 1.86472 1.22791 1.31849 1.84564 1.19671 0.86895 0.81043 0.71495 1.90754 1.66714 1.36360 1.49282 1.19017 0.90849 0.92892 1.30648 1.24529 0.88186 1.00903 0.95385 1.77179 1.23499 0.89013 1.25866 1.49183 1.06245 1.05038 1.50505 1.19450 0.81025 0.86497 0.98289 1.21387 1.16239 1.30295 0.91514 0.92906 1.25712 0.95138 0.94658 1.02187 1.69991 1.20667 1.31644 1.32979 0.85359 0.78569 0.77953 0.78673 1.20003 1.19617 1.19335 1.21977 0.84391 0.98026 0.93140 1.20695 1.02450 0.87429 1.04655 0.87719 0.88076 0.88139 0.74604 0.91117 0.91819 0.92054 0.92204 0.91787 0.91171 0.89855 0.89651 0.76179 0.92604 0.94848 0.91632 0.88322 0.87867 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 10.39 71.24 0.74 -0.23 16 2 C 0.51 7.68 7.36 87.66 0.65 8.32 16 3 O -0.58 -14.33 13.31 -3.04 -0.04 -14.37 16 4 N -0.71 -8.77 5.11 -422.91 -2.16 -10.93 16 5 C 0.18 3.11 0.89 3.60 0.00 3.11 16 6 C -0.16 -3.08 8.26 71.98 0.59 -2.48 16 7 C -0.16 -3.17 8.26 71.98 0.59 -2.58 16 8 C 0.07 1.28 4.45 71.98 0.32 1.60 16 9 O -0.34 -8.43 8.73 -56.67 -0.49 -8.92 16 10 C 0.56 17.19 7.95 70.20 0.56 17.75 16 11 O -0.54 -17.58 14.63 19.77 0.29 -17.29 16 12 C -0.32 -11.28 6.13 -20.16 -0.12 -11.40 16 13 C 0.10 3.36 11.87 85.67 1.02 4.38 16 14 N -0.34 -14.48 12.50 -56.25 -0.70 -15.19 16 15 N -0.33 -15.00 3.56 -336.67 -1.20 -16.20 16 16 C 0.27 13.32 5.78 85.64 0.50 13.82 16 17 C -0.56 -29.91 9.39 25.60 0.24 -29.67 16 18 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 19 C 0.02 1.31 5.46 84.66 0.46 1.77 16 20 N -0.92 -50.19 13.29 21.45 0.28 -49.91 16 21 Si 0.97 41.92 29.54 68.60 2.03 43.94 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 24 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 25 C 0.16 6.31 7.01 42.17 0.30 6.61 16 26 C -0.09 -3.15 9.34 71.24 0.67 -2.48 16 27 H 0.10 0.02 7.91 -2.39 -0.02 0.00 16 28 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.42 2.41 8.31 -92.71 -0.77 1.64 16 31 H 0.07 1.44 7.68 -2.39 -0.02 1.42 16 32 H 0.06 1.47 6.17 -2.39 -0.01 1.46 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.50 6.17 -2.39 -0.01 1.49 16 36 H 0.07 1.47 7.68 -2.39 -0.02 1.46 16 37 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.22 5.67 8.06 -2.91 -0.02 5.65 16 40 H 0.06 2.76 7.62 -2.38 -0.02 2.74 16 41 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.27 14.09 8.31 -92.70 -0.77 13.32 16 43 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 44 H 0.10 3.25 6.51 -2.39 -0.02 3.24 16 45 H 0.07 2.69 7.70 -2.39 -0.02 2.67 16 Total: -1.00 -68.70 379.55 4.75 -63.95 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.24 Total: 16.41 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 6.51 Total: 8.50 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -3.78 Total: -92.22 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -0.25 Total: -40.58 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Total: -68.70 4.75 -63.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893446649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.818 kcal (2) G-P(sol) polarization free energy of solvation -68.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds