Wall clock time and date at job start Tue Mar 31 2020 13:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45198 * 109.46973 * 2 1 4 4 C 1.34230 * 116.99772 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99943 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00294 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.46995 * 358.41886 * 6 4 3 8 8 C 1.52994 * 109.47373 * 238.41728 * 6 4 3 9 9 C 1.52997 * 109.47290 * 299.99987 * 8 6 4 10 10 C 1.53002 * 109.47116 * 299.99943 * 9 8 6 11 11 H 1.09004 * 109.47051 * 300.00192 * 10 9 8 12 12 N 1.46898 * 109.47656 * 179.97438 * 10 9 8 13 13 C 1.46901 * 111.00113 * 84.99732 * 12 10 9 14 14 C 1.50692 * 109.47429 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99913 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00359 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99839 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00288 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47176 * 89.99874 * 18 16 14 20 20 H 1.48506 * 109.47072 * 210.00238 * 18 16 14 21 21 H 1.48505 * 109.46897 * 329.99935 * 18 16 14 22 22 C 1.53004 * 109.47043 * 59.99870 * 10 9 8 23 23 C 1.53001 * 109.47366 * 118.41555 * 6 4 3 24 24 H 1.08997 * 109.47577 * 180.02562 * 23 6 4 25 25 C 1.53004 * 109.47065 * 300.00386 * 23 6 4 26 26 F 1.39902 * 109.46832 * 185.81607 * 25 23 6 27 27 F 1.39896 * 109.47188 * 305.81307 * 25 23 6 28 28 F 1.39903 * 109.47298 * 65.81614 * 25 23 6 29 29 H 1.08995 * 109.47312 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46825 * 299.99874 * 1 2 3 31 31 H 1.09003 * 109.46977 * 59.99837 * 1 2 3 32 32 H 1.09000 * 109.46825 * 240.00125 * 2 1 3 33 33 H 1.09003 * 109.46977 * 120.00162 * 2 1 3 34 34 H 1.09001 * 109.47327 * 59.99782 * 8 6 4 35 35 H 1.08999 * 109.47608 * 180.02562 * 8 6 4 36 36 H 1.08993 * 109.47581 * 179.97438 * 9 8 6 37 37 H 1.09000 * 109.47442 * 59.99222 * 9 8 6 38 38 H 1.00895 * 111.00342 * 208.95680 * 12 10 9 39 39 H 1.09005 * 109.47004 * 300.00588 * 13 12 10 40 40 H 1.09002 * 109.46866 * 60.00304 * 13 12 10 41 41 H 0.96997 * 120.00661 * 180.02562 * 17 16 14 42 42 H 1.08990 * 109.47119 * 60.00329 * 22 10 9 43 43 H 1.09005 * 109.46671 * 180.02562 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9373 -0.0012 7 1 3.1105 3.6657 -0.0294 8 6 4.8134 3.1195 -1.2303 9 6 5.9509 2.0971 -1.1906 10 6 6.7807 2.3063 0.0777 11 1 7.1973 3.3135 0.0773 12 7 7.8725 1.3243 0.1162 13 6 9.0347 1.7989 -0.6467 14 6 10.1315 0.7675 -0.5849 15 1 9.9803 -0.1493 -0.0344 16 6 11.3278 0.9935 -1.2321 17 7 11.5115 2.1092 -1.9038 18 14 12.6872 -0.2854 -1.1562 19 1 12.5386 -1.2336 -2.2894 20 1 14.0071 0.3893 -1.2450 21 1 12.5965 -1.0286 0.1263 22 6 5.8880 2.1241 1.3069 23 6 4.7506 3.1466 1.2672 24 1 5.1669 4.1539 1.2670 25 6 3.8579 2.9644 2.4964 26 9 4.5818 3.2849 3.6499 27 9 2.7461 3.8074 2.3944 28 9 3.4298 1.6345 2.5689 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 4.2223 2.9704 -2.1339 35 1 5.2305 4.1265 -1.2306 36 1 6.5866 2.2265 -2.0665 37 1 5.5343 1.0898 -1.1901 38 1 8.1290 1.1057 1.0673 39 1 8.7462 1.9604 -1.6854 40 1 9.3920 2.7357 -0.2190 41 1 12.3529 2.2683 -2.3594 42 1 5.4715 1.1169 1.3074 43 1 6.4792 2.2736 2.2105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894082179.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:26 Heat of formation + Delta-G solvation = -271.714946 kcal Electronic energy + Delta-G solvation = -29632.882141 eV Core-core repulsion = 25068.722611 eV Total energy + Delta-G solvation = -4564.159529 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.23172 -48.71850 -48.66902 -42.10979 -39.66637 -37.47397 -36.33402 -34.51552 -32.82206 -32.64216 -31.06386 -28.05828 -27.06152 -25.11119 -23.95048 -23.59603 -22.90686 -21.84848 -21.07121 -19.50714 -19.40680 -18.74001 -18.65560 -18.32962 -17.68903 -16.80563 -16.65762 -16.26369 -16.03472 -15.72661 -15.53031 -15.35835 -15.16426 -15.09697 -14.83646 -14.80161 -14.67915 -14.35359 -14.18861 -13.75278 -13.68306 -13.55432 -13.43526 -13.26291 -12.99961 -12.86018 -12.77638 -12.61738 -12.47820 -12.30432 -12.16618 -12.11995 -11.64146 -11.43450 -11.30330 -11.18421 -10.77517 -10.61686 -9.05904 -8.22303 -6.32557 1.13043 1.40393 1.42080 1.53100 1.54819 1.68148 2.39832 2.61396 2.77302 2.88498 3.10938 3.40351 3.51327 3.59038 3.88782 3.94815 4.01743 4.02857 4.09763 4.12965 4.20217 4.30113 4.37035 4.46514 4.60248 4.72607 4.86079 4.91399 4.93774 5.04360 5.06499 5.14330 5.17298 5.25571 5.33160 5.39673 5.60784 5.73281 6.06667 6.50214 6.75469 6.79019 6.91086 7.38158 8.89089 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.017318 B = 0.003399 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.462911 B = 8235.341788 C = 8895.762264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.053 3.947 3 O -0.358 6.358 4 C 0.452 3.548 5 O -0.504 6.504 6 C -0.072 4.072 7 H 0.145 0.855 8 C -0.096 4.096 9 C -0.123 4.123 10 C 0.101 3.899 11 H 0.036 0.964 12 N -0.687 5.687 13 C 0.214 3.786 14 C -0.537 4.537 15 H 0.060 0.940 16 C 0.003 3.997 17 N -0.932 5.932 18 Si 0.970 3.030 19 H -0.274 1.274 20 H -0.279 1.279 21 H -0.265 1.265 22 C -0.125 4.125 23 C -0.114 4.114 24 H 0.162 0.838 25 C 0.453 3.547 26 F -0.182 7.182 27 F -0.173 7.173 28 F -0.190 7.190 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.332 0.668 39 H 0.002 0.998 40 H -0.037 1.037 41 H 0.265 0.735 42 H 0.089 0.911 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.729 3.962 5.879 24.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.295 3.705 5 O -0.392 6.392 6 C -0.091 4.091 7 H 0.163 0.837 8 C -0.133 4.133 9 C -0.161 4.161 10 C -0.009 4.009 11 H 0.053 0.947 12 N -0.318 5.318 13 C 0.087 3.913 14 C -0.576 4.576 15 H 0.078 0.922 16 C -0.195 4.195 17 N -0.572 5.572 18 Si 0.794 3.206 19 H -0.200 1.200 20 H -0.205 1.205 21 H -0.190 1.190 22 C -0.163 4.163 23 C -0.134 4.134 24 H 0.179 0.821 25 C 0.399 3.601 26 F -0.163 7.163 27 F -0.155 7.155 28 F -0.171 7.171 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.127 0.873 36 H 0.062 0.938 37 H 0.093 0.907 38 H 0.149 0.851 39 H 0.020 0.980 40 H -0.020 1.020 41 H 0.074 0.926 42 H 0.107 0.893 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -23.687 3.351 5.289 24.500 hybrid contribution 1.319 -0.208 0.698 1.507 sum -22.368 3.143 5.987 23.367 Atomic orbital electron populations 1.21806 0.90289 1.04255 1.03754 1.23228 0.97126 0.79478 1.02169 1.86498 1.23902 1.33414 1.83696 1.23902 0.80911 0.93010 0.72628 1.90651 1.60074 1.44012 1.44452 1.21143 0.99453 0.92155 0.96376 0.83690 1.21490 0.95197 1.01348 0.95296 1.21768 0.96483 1.01152 0.96711 1.21322 0.91285 0.93467 0.94820 0.94657 1.60524 1.09370 1.44041 1.17854 1.19189 0.87030 0.92685 0.92434 1.21567 0.99059 1.04487 1.32447 0.92212 1.25898 1.01108 0.97782 0.94704 1.70072 1.26328 1.26475 1.34314 0.85376 0.77717 0.78612 0.78848 1.20009 1.20475 1.18959 1.21905 0.95615 1.00222 0.98518 1.22517 0.95155 1.06469 0.89235 0.82077 1.20650 0.80042 0.73497 0.85942 1.93192 1.77539 1.92501 1.53087 1.93195 1.55044 1.71054 1.96187 1.93171 1.90850 1.36614 1.96507 0.88459 0.91391 0.90898 0.91505 0.92105 0.88916 0.87322 0.93778 0.90676 0.85068 0.97967 1.01959 0.92605 0.89296 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 10.29 71.98 0.74 -1.06 16 2 C 0.05 1.04 6.19 71.98 0.45 1.49 16 3 O -0.36 -8.06 10.22 -51.42 -0.53 -8.59 16 4 C 0.45 11.38 4.33 71.23 0.31 11.69 16 5 O -0.50 -16.13 11.03 21.96 0.24 -15.89 16 6 C -0.07 -1.41 2.47 -11.54 -0.03 -1.44 16 7 H 0.15 1.92 7.66 -2.39 -0.02 1.90 16 8 C -0.10 -2.00 5.44 30.59 0.17 -1.83 16 9 C -0.12 -3.99 5.13 30.59 0.16 -3.83 16 10 C 0.10 3.48 2.49 44.92 0.11 3.59 16 11 H 0.04 1.22 7.80 -2.38 -0.02 1.20 16 12 N -0.69 -30.48 6.30 -495.56 -3.12 -33.60 16 13 C 0.21 11.59 5.24 85.55 0.45 12.04 16 14 C -0.54 -31.33 9.32 25.60 0.24 -31.10 16 15 H 0.06 3.43 7.81 -2.91 -0.02 3.41 16 16 C 0.00 0.20 5.46 84.66 0.46 0.66 16 17 N -0.93 -56.48 13.29 21.45 0.28 -56.19 16 18 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 22 C -0.13 -3.53 3.92 30.60 0.12 -3.41 16 23 C -0.11 -2.36 2.06 -10.79 -0.02 -2.38 16 24 H 0.16 2.40 8.14 -2.39 -0.02 2.38 16 25 C 0.45 9.86 2.63 71.98 0.19 10.05 16 26 F -0.18 -4.18 17.03 44.97 0.77 -3.42 16 27 F -0.17 -3.39 16.57 44.97 0.75 -2.65 16 28 F -0.19 -4.92 14.34 44.97 0.64 -4.27 16 29 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 1.33 8.13 -2.39 -0.02 1.31 16 33 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 34 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.04 1.63 7.45 -2.39 -0.02 1.61 16 37 H 0.07 2.76 5.46 -2.39 -0.01 2.75 16 38 H 0.33 14.18 8.34 -89.70 -0.75 13.44 16 39 H 0.00 0.13 7.44 -2.38 -0.02 0.11 16 40 H -0.04 -2.13 8.06 -2.39 -0.02 -2.15 16 41 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 42 H 0.09 2.92 5.10 -2.39 -0.01 2.91 16 43 H 0.08 2.06 7.94 -2.38 -0.02 2.04 16 Total: -1.00 -70.12 351.09 4.69 -65.43 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.29 Total: 17.65 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 3.34 Total: -5.53 kcal Atomic # 7 Polarization: -86.95 SS G_CDS: -2.84 Total: -89.79 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.28 Total: -24.48 kcal Atomic # 9 Polarization: -12.50 SS G_CDS: 2.16 Total: -10.34 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -70.12 4.69 -65.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894082179.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.282 kcal (2) G-P(sol) polarization free energy of solvation -70.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -276.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -271.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds