Wall clock time and date at job start Tue Mar 31 2020 13:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45193 * 109.47382 * 2 1 4 4 C 1.34228 * 117.00473 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99371 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00260 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.47367 * 2.54827 * 6 4 3 8 8 C 1.53001 * 109.46985 * 242.54539 * 6 4 3 9 9 C 1.53006 * 109.47115 * 179.97438 * 8 6 4 10 10 C 1.53005 * 109.46787 * 60.00475 * 9 8 6 11 11 H 1.08998 * 109.46728 * 179.97438 * 10 9 8 12 12 N 1.46902 * 109.46793 * 60.00079 * 10 9 8 13 13 C 1.46897 * 111.00128 * 85.00161 * 12 10 9 14 14 C 1.50709 * 109.46930 * 179.97438 * 13 12 10 15 15 H 1.07991 * 119.99811 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99694 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99742 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00201 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46797 * 90.00078 * 18 16 14 20 20 H 1.48498 * 109.47145 * 210.00034 * 18 16 14 21 21 H 1.48503 * 109.47150 * 330.00577 * 18 16 14 22 22 C 1.52992 * 109.46985 * 299.99838 * 10 9 8 23 23 C 1.53004 * 109.47036 * 122.55345 * 6 4 3 24 24 H 1.08995 * 109.47695 * 60.00001 * 23 6 4 25 25 C 1.53004 * 109.46904 * 299.99562 * 23 6 4 26 26 F 1.39898 * 109.46828 * 65.47722 * 25 23 6 27 27 F 1.39901 * 109.47086 * 185.48127 * 25 23 6 28 28 F 1.39902 * 109.47218 * 305.48050 * 25 23 6 29 29 H 1.08998 * 109.47034 * 300.00218 * 1 2 3 30 30 H 1.09003 * 109.46826 * 59.99818 * 1 2 3 31 31 H 1.09000 * 109.47411 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47034 * 239.99782 * 2 1 3 33 33 H 1.09003 * 109.46826 * 120.00182 * 2 1 3 34 34 H 1.08998 * 109.47303 * 300.00327 * 8 6 4 35 35 H 1.09005 * 109.47226 * 60.00451 * 8 6 4 36 36 H 1.09001 * 109.46674 * 180.02562 * 9 8 6 37 37 H 1.08995 * 109.46982 * 300.00450 * 9 8 6 38 38 H 1.00897 * 111.00133 * 321.04023 * 12 10 9 39 39 H 1.09002 * 109.47039 * 299.99071 * 13 12 10 40 40 H 1.08998 * 109.47626 * 59.99754 * 13 12 10 41 41 H 0.97000 * 119.99519 * 179.97438 * 17 16 14 42 42 H 1.09005 * 109.47306 * 179.97438 * 22 10 9 43 43 H 1.08998 * 109.47113 * 299.99945 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0012 7 1 3.1110 3.6655 0.0468 8 6 4.7307 3.1547 -1.2785 9 6 5.3151 4.5688 -1.2782 10 6 6.2266 4.7436 -0.0619 11 1 6.6432 5.7509 -0.0619 12 7 7.3184 3.7626 -0.1232 13 6 8.4279 4.2605 -0.9472 14 6 9.5266 3.2298 -0.9860 15 1 9.4123 2.2983 -0.4516 16 6 10.6778 3.4760 -1.7038 17 7 11.6365 2.5763 -1.7381 18 14 10.8752 5.0870 -2.6287 19 1 11.5104 6.0932 -1.7402 20 1 11.7311 4.8705 -3.8228 21 1 9.5411 5.5779 -3.0582 22 6 5.4167 4.5262 1.2178 23 6 4.8326 3.1115 1.2174 24 1 5.6424 2.3835 1.1718 25 6 4.0227 2.8941 2.4972 26 9 3.5924 1.5642 2.5564 27 9 4.8235 3.1752 3.6093 28 9 2.9115 3.7441 2.4960 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 5.5405 2.4266 -1.3242 35 1 4.0813 3.0306 -2.1451 36 1 5.8917 4.7238 -2.1902 37 1 4.5050 5.2966 -1.2328 38 1 6.9862 2.8727 -0.4634 39 1 8.0716 4.4505 -1.9597 40 1 8.8128 5.1854 -0.5179 41 1 12.4462 2.7495 -2.2433 42 1 6.0662 4.6503 2.0844 43 1 4.6067 5.2541 1.2632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894082185.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:33 Heat of formation + Delta-G solvation = -255.164030 kcal Electronic energy + Delta-G solvation = -29671.534481 eV Core-core repulsion = 25108.092653 eV Total energy + Delta-G solvation = -4563.441828 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.17504 -47.65604 -47.61375 -40.90473 -39.03586 -36.68427 -34.58703 -32.51935 -31.98005 -31.59910 -30.10971 -26.64362 -26.02368 -24.34727 -22.86914 -22.23267 -21.50222 -20.89245 -19.33698 -18.36233 -18.27675 -17.87204 -17.69772 -16.73180 -16.62769 -16.45037 -15.35497 -14.71889 -14.65000 -14.40759 -14.36058 -14.14373 -14.10743 -14.01622 -13.76167 -13.74895 -13.63103 -13.25698 -13.08967 -12.88338 -12.73848 -12.51139 -12.12388 -12.11095 -12.00888 -11.82991 -11.76580 -11.39418 -10.96901 -10.85831 -10.72483 -10.68413 -10.47542 -10.44856 -10.10806 -9.83472 -9.31966 -8.61386 -7.57160 -6.07456 -4.05895 2.06888 2.43525 2.67556 3.26349 3.33874 3.34176 3.65576 3.81663 3.99418 4.38984 4.39476 4.49844 4.65426 4.71231 4.74821 4.84904 4.89275 4.95807 5.04879 5.08198 5.21757 5.25282 5.28159 5.41335 5.44935 5.52626 5.65368 5.70074 5.72101 5.88813 6.00480 6.06358 6.19492 6.28155 6.33066 6.71906 6.98270 7.55645 7.64523 7.82407 8.23029 8.61208 9.01261 9.53767 11.05838 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.016738 B = 0.003729 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.441535 B = 7506.075715 C = 8085.699227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.356 6.356 4 C 0.460 3.540 5 O -0.489 6.489 6 C -0.074 4.074 7 H 0.112 0.888 8 C -0.107 4.107 9 C -0.150 4.150 10 C 0.084 3.916 11 H 0.086 0.914 12 N -0.676 5.676 13 C 0.164 3.836 14 C -0.518 4.518 15 H 0.079 0.921 16 C 0.069 3.931 17 N -0.899 5.899 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.268 1.268 22 C -0.101 4.101 23 C -0.120 4.120 24 H 0.138 0.862 25 C 0.449 3.551 26 F -0.183 7.183 27 F -0.176 7.176 28 F -0.182 7.182 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.337 0.663 39 H -0.014 1.014 40 H 0.023 0.977 41 H 0.264 0.736 42 H 0.091 0.909 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.174 1.707 4.012 23.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.273 6.273 4 C 0.301 3.699 5 O -0.375 6.375 6 C -0.094 4.094 7 H 0.130 0.870 8 C -0.144 4.144 9 C -0.189 4.189 10 C -0.027 4.027 11 H 0.104 0.896 12 N -0.308 5.308 13 C 0.037 3.963 14 C -0.556 4.556 15 H 0.097 0.903 16 C -0.133 4.133 17 N -0.538 5.538 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.193 1.193 22 C -0.139 4.139 23 C -0.140 4.140 24 H 0.156 0.844 25 C 0.395 3.605 26 F -0.165 7.165 27 F -0.157 7.157 28 F -0.164 7.164 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.158 0.842 39 H 0.004 0.996 40 H 0.041 0.959 41 H 0.074 0.926 42 H 0.110 0.890 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.510 1.530 4.562 23.018 hybrid contribution -0.262 0.397 -1.155 1.249 sum -22.771 1.927 3.407 23.105 Atomic orbital electron populations 1.21802 0.92661 1.02922 1.03479 1.23037 0.95286 0.80244 1.02784 1.86499 1.24389 1.32468 1.83965 1.23567 0.80889 0.92529 0.72889 1.90709 1.60235 1.42638 1.43957 1.21059 0.98693 0.91978 0.97624 0.87032 1.21512 0.99617 0.99496 0.93810 1.22264 1.00158 0.95529 1.00987 1.21536 0.91387 0.98321 0.91502 0.89589 1.60658 1.07733 1.04646 1.57771 1.20030 0.89582 0.96776 0.89926 1.21058 0.99696 1.03826 1.30998 0.90293 1.24914 0.95696 0.96557 0.96153 1.69905 1.07234 1.34558 1.42070 0.86828 0.78354 0.84486 0.79824 1.20176 1.21285 1.19262 1.21678 0.99652 0.91449 1.01104 1.22541 0.98388 1.05075 0.87980 0.84438 1.20717 0.78754 0.73696 0.87360 1.93185 1.90660 1.36026 1.96605 1.93196 1.73250 1.93315 1.55933 1.93162 1.55352 1.70998 1.96874 0.91472 0.91510 0.90258 0.91151 0.91073 0.89498 0.90510 0.90427 0.91252 0.84230 0.99630 0.95907 0.92640 0.88995 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.29 37.16 0.38 -0.68 16 2 C 0.06 0.61 6.19 37.16 0.23 0.84 16 3 O -0.36 -4.35 10.22 -39.25 -0.40 -4.75 16 4 C 0.46 6.25 4.50 36.00 0.16 6.41 16 5 O -0.49 -8.04 16.26 -18.75 -0.30 -8.34 16 6 C -0.07 -0.87 1.94 -91.77 -0.18 -1.05 16 7 H 0.11 1.10 7.67 -51.93 -0.40 0.70 16 8 C -0.11 -1.28 4.88 -26.73 -0.13 -1.41 16 9 C -0.15 -1.80 5.52 -26.73 -0.15 -1.95 16 10 C 0.08 1.18 2.86 -67.71 -0.19 0.99 16 11 H 0.09 1.21 7.80 -51.93 -0.40 0.81 16 12 N -0.68 -12.67 5.75 -107.99 -0.62 -13.29 16 13 C 0.16 3.75 4.31 -4.97 -0.02 3.72 16 14 C -0.52 -14.45 9.87 -34.44 -0.34 -14.79 16 15 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 17 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 18 Si 0.88 21.08 27.47 -169.99 -4.67 16.41 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 22 C -0.10 -1.22 4.67 -26.71 -0.12 -1.34 16 23 C -0.12 -1.54 1.47 -90.59 -0.13 -1.67 16 24 H 0.14 2.04 7.12 -51.93 -0.37 1.67 16 25 C 0.45 5.84 2.63 37.16 0.10 5.94 16 26 F -0.18 -2.63 14.94 2.25 0.03 -2.60 16 27 F -0.18 -2.41 16.59 2.25 0.04 -2.37 16 28 F -0.18 -2.20 16.28 2.25 0.04 -2.17 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 33 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 34 H 0.09 1.25 6.24 -51.93 -0.32 0.92 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 1.03 7.46 -51.93 -0.39 0.65 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.34 6.33 5.56 -39.29 -0.22 6.11 16 39 H -0.01 -0.31 6.49 -51.93 -0.34 -0.65 16 40 H 0.02 0.53 7.48 -51.93 -0.39 0.14 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.09 1.18 7.68 -51.93 -0.40 0.78 16 43 H 0.07 0.73 7.95 -51.93 -0.41 0.32 16 LS Contribution 351.58 15.07 5.30 5.30 Total: -1.00 -31.53 351.58 -6.50 -38.03 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -6.19 Total: 3.57 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -0.49 Total: -3.13 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.15 Total: -39.95 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -0.71 Total: -13.09 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 0.11 Total: -7.14 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.53 -6.50 -38.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894082185.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -217.136 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -248.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -255.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds