Wall clock time and date at job start Tue Mar 31 2020 13:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45193 * 109.47382 * 2 1 4 4 C 1.34228 * 117.00473 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99371 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00260 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.47367 * 2.54827 * 6 4 3 8 8 C 1.53001 * 109.46985 * 242.54539 * 6 4 3 9 9 C 1.53006 * 109.47115 * 179.97438 * 8 6 4 10 10 C 1.53005 * 109.46787 * 60.00475 * 9 8 6 11 11 H 1.08998 * 109.46728 * 179.97438 * 10 9 8 12 12 N 1.46902 * 109.46793 * 60.00079 * 10 9 8 13 13 C 1.46897 * 111.00128 * 85.00161 * 12 10 9 14 14 C 1.50709 * 109.46930 * 179.97438 * 13 12 10 15 15 H 1.07991 * 119.99811 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99694 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99742 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00201 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46797 * 90.00078 * 18 16 14 20 20 H 1.48498 * 109.47145 * 210.00034 * 18 16 14 21 21 H 1.48503 * 109.47150 * 330.00577 * 18 16 14 22 22 C 1.52992 * 109.46985 * 299.99838 * 10 9 8 23 23 C 1.53004 * 109.47036 * 122.55345 * 6 4 3 24 24 H 1.08995 * 109.47695 * 60.00001 * 23 6 4 25 25 C 1.53004 * 109.46904 * 299.99562 * 23 6 4 26 26 F 1.39898 * 109.46828 * 65.47722 * 25 23 6 27 27 F 1.39901 * 109.47086 * 185.48127 * 25 23 6 28 28 F 1.39902 * 109.47218 * 305.48050 * 25 23 6 29 29 H 1.08998 * 109.47034 * 300.00218 * 1 2 3 30 30 H 1.09003 * 109.46826 * 59.99818 * 1 2 3 31 31 H 1.09000 * 109.47411 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47034 * 239.99782 * 2 1 3 33 33 H 1.09003 * 109.46826 * 120.00182 * 2 1 3 34 34 H 1.08998 * 109.47303 * 300.00327 * 8 6 4 35 35 H 1.09005 * 109.47226 * 60.00451 * 8 6 4 36 36 H 1.09001 * 109.46674 * 180.02562 * 9 8 6 37 37 H 1.08995 * 109.46982 * 300.00450 * 9 8 6 38 38 H 1.00897 * 111.00133 * 321.04023 * 12 10 9 39 39 H 1.09002 * 109.47039 * 299.99071 * 13 12 10 40 40 H 1.08998 * 109.47626 * 59.99754 * 13 12 10 41 41 H 0.97000 * 119.99519 * 179.97438 * 17 16 14 42 42 H 1.09005 * 109.47306 * 179.97438 * 22 10 9 43 43 H 1.08998 * 109.47113 * 299.99945 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0012 7 1 3.1110 3.6655 0.0468 8 6 4.7307 3.1547 -1.2785 9 6 5.3151 4.5688 -1.2782 10 6 6.2266 4.7436 -0.0619 11 1 6.6432 5.7509 -0.0619 12 7 7.3184 3.7626 -0.1232 13 6 8.4279 4.2605 -0.9472 14 6 9.5266 3.2298 -0.9860 15 1 9.4123 2.2983 -0.4516 16 6 10.6778 3.4760 -1.7038 17 7 11.6365 2.5763 -1.7381 18 14 10.8752 5.0870 -2.6287 19 1 11.5104 6.0932 -1.7402 20 1 11.7311 4.8705 -3.8228 21 1 9.5411 5.5779 -3.0582 22 6 5.4167 4.5262 1.2178 23 6 4.8326 3.1115 1.2174 24 1 5.6424 2.3835 1.1718 25 6 4.0227 2.8941 2.4972 26 9 3.5924 1.5642 2.5564 27 9 4.8235 3.1752 3.6093 28 9 2.9115 3.7441 2.4960 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 5.5405 2.4266 -1.3242 35 1 4.0813 3.0306 -2.1451 36 1 5.8917 4.7238 -2.1902 37 1 4.5050 5.2966 -1.2328 38 1 6.9862 2.8727 -0.4634 39 1 8.0716 4.4505 -1.9597 40 1 8.8128 5.1854 -0.5179 41 1 12.4462 2.7495 -2.2433 42 1 6.0662 4.6503 2.0844 43 1 4.6067 5.2541 1.2632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894082185.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:32 Heat of formation + Delta-G solvation = -274.784643 kcal Electronic energy + Delta-G solvation = -29672.385295 eV Core-core repulsion = 25108.092653 eV Total energy + Delta-G solvation = -4564.292641 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.23717 -48.74658 -48.65184 -41.94749 -40.11101 -37.74663 -36.08965 -34.41674 -32.82775 -32.58405 -31.47860 -28.32900 -27.14184 -25.30448 -23.72222 -23.45552 -23.15579 -21.92328 -20.44278 -19.46388 -19.41980 -18.96919 -18.75311 -18.63896 -17.58827 -17.46378 -16.78640 -16.15788 -15.75947 -15.60752 -15.54818 -15.26823 -15.19364 -15.05758 -14.91830 -14.81214 -14.78007 -14.55034 -14.37940 -13.96479 -13.82923 -13.63986 -13.44049 -13.38844 -13.06478 -12.91437 -12.60220 -12.54350 -12.39654 -12.29046 -11.93325 -11.91633 -11.68679 -11.56734 -11.52675 -11.36699 -11.16052 -10.77899 -9.05448 -8.27185 -6.31826 1.00733 1.37503 1.39589 1.50145 1.50511 1.63408 2.36574 2.61669 2.79370 2.94948 3.07529 3.41006 3.46789 3.62358 3.71499 3.86280 3.97807 3.98952 4.06494 4.07720 4.22981 4.29373 4.32451 4.40083 4.65301 4.75923 4.79976 4.85849 4.88155 4.90728 4.98173 5.04817 5.12426 5.15567 5.23530 5.35469 5.40578 5.57437 6.00463 6.58216 6.62129 6.71228 6.81072 7.33183 8.90037 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.016738 B = 0.003729 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.441535 B = 7506.075715 C = 8085.699227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 O -0.354 6.354 4 C 0.459 3.541 5 O -0.528 6.528 6 C -0.068 4.068 7 H 0.143 0.857 8 C -0.104 4.104 9 C -0.142 4.142 10 C 0.079 3.921 11 H 0.094 0.906 12 N -0.689 5.689 13 C 0.177 3.823 14 C -0.528 4.528 15 H 0.029 0.971 16 C 0.003 3.997 17 N -0.952 5.952 18 Si 0.955 3.045 19 H -0.267 1.267 20 H -0.286 1.286 21 H -0.242 1.242 22 C -0.093 4.093 23 C -0.118 4.118 24 H 0.109 0.891 25 C 0.452 3.548 26 F -0.194 7.194 27 F -0.181 7.181 28 F -0.171 7.171 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.334 0.666 39 H -0.006 1.006 40 H 0.028 0.972 41 H 0.266 0.734 42 H 0.082 0.918 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.867 4.598 3.266 26.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 O -0.271 6.271 4 C 0.303 3.697 5 O -0.416 6.416 6 C -0.087 4.087 7 H 0.161 0.839 8 C -0.142 4.142 9 C -0.180 4.180 10 C -0.031 4.031 11 H 0.112 0.888 12 N -0.321 5.321 13 C 0.048 3.952 14 C -0.567 4.567 15 H 0.048 0.952 16 C -0.194 4.194 17 N -0.593 5.593 18 Si 0.778 3.222 19 H -0.192 1.192 20 H -0.212 1.212 21 H -0.165 1.165 22 C -0.131 4.131 23 C -0.138 4.138 24 H 0.127 0.873 25 C 0.398 3.602 26 F -0.175 7.175 27 F -0.163 7.163 28 F -0.153 7.153 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.127 0.873 38 H 0.153 0.847 39 H 0.012 0.988 40 H 0.046 0.954 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -25.255 4.434 3.834 25.926 hybrid contribution 0.518 -0.646 -0.831 1.173 sum -24.737 3.788 3.003 25.204 Atomic orbital electron populations 1.21816 0.89950 1.04418 1.03888 1.23307 0.97397 0.79290 1.02296 1.86501 1.23490 1.33667 1.83406 1.23966 0.81126 0.92868 0.71769 1.90699 1.61135 1.44031 1.45763 1.21117 0.99153 0.91609 0.96816 0.83872 1.21475 0.99010 0.98937 0.94741 1.22195 1.00647 0.96138 0.99066 1.21698 0.90645 0.97151 0.93591 0.88821 1.60538 1.08967 1.05721 1.56919 1.19752 0.89379 0.95032 0.91010 1.21409 1.01741 1.03432 1.30078 0.95225 1.25967 0.95131 1.00980 0.97318 1.70087 1.08162 1.37390 1.43657 0.85599 0.79485 0.79009 0.78084 1.19162 1.21211 1.16486 1.21656 1.00246 0.91595 0.99589 1.22460 0.97885 1.04956 0.88459 0.87317 1.20705 0.78944 0.73392 0.87195 1.93169 1.90764 1.36956 1.96633 1.93187 1.73488 1.93301 1.56279 1.93179 1.54753 1.70505 1.96823 0.91307 0.90762 0.88253 0.91291 0.92073 0.92712 0.88536 0.91504 0.87311 0.84650 0.98827 0.95389 0.92526 0.89971 0.87057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 10.29 71.98 0.74 -0.99 16 2 C 0.05 0.98 6.19 71.98 0.45 1.43 16 3 O -0.35 -8.16 10.22 -51.40 -0.53 -8.68 16 4 C 0.46 12.19 4.50 71.23 0.32 12.51 16 5 O -0.53 -17.87 16.26 21.95 0.36 -17.51 16 6 C -0.07 -1.46 1.94 -11.54 -0.02 -1.48 16 7 H 0.14 2.21 7.67 -2.39 -0.02 2.19 16 8 C -0.10 -2.31 4.88 30.60 0.15 -2.16 16 9 C -0.14 -2.93 5.52 30.60 0.17 -2.76 16 10 C 0.08 2.04 2.86 44.91 0.13 2.17 16 11 H 0.09 2.32 7.80 -2.39 -0.02 2.30 16 12 N -0.69 -25.85 5.75 -495.57 -2.85 -28.70 16 13 C 0.18 7.96 4.31 85.56 0.37 8.33 16 14 C -0.53 -30.49 9.87 25.60 0.25 -30.24 16 15 H 0.03 1.93 8.06 -2.92 -0.02 1.91 16 16 C 0.00 0.17 5.47 84.65 0.46 0.63 16 17 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 18 Si 0.96 43.22 27.47 68.60 1.88 45.11 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 20 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 21 H -0.24 -9.83 6.54 99.48 0.65 -9.18 16 22 C -0.09 -2.01 4.67 30.61 0.14 -1.87 16 23 C -0.12 -2.89 1.47 -10.77 -0.02 -2.90 16 24 H 0.11 3.35 7.12 -2.39 -0.02 3.34 16 25 C 0.45 11.22 2.63 71.98 0.19 11.41 16 26 F -0.19 -5.53 14.94 44.97 0.67 -4.86 16 27 F -0.18 -4.84 16.59 44.97 0.75 -4.09 16 28 F -0.17 -3.65 16.28 44.97 0.73 -2.92 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.10 0.80 8.14 -2.39 -0.02 0.79 16 32 H 0.07 1.34 8.13 -2.39 -0.02 1.32 16 33 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 34 H 0.05 1.59 6.24 -2.39 -0.01 1.58 16 35 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.07 1.57 7.46 -2.39 -0.02 1.55 16 37 H 0.11 1.46 8.14 -2.39 -0.02 1.45 16 38 H 0.33 13.00 5.56 -89.70 -0.50 12.50 16 39 H -0.01 -0.26 6.49 -2.39 -0.02 -0.27 16 40 H 0.03 1.24 7.48 -2.39 -0.02 1.22 16 41 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 42 H 0.08 1.98 7.68 -2.38 -0.02 1.96 16 43 H 0.11 1.65 7.95 -2.39 -0.02 1.63 16 Total: -1.00 -71.88 351.58 5.12 -66.76 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: 0.48 Total: 20.74 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 3.33 Total: -5.92 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -2.55 Total: -88.61 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.17 Total: -26.20 kcal Atomic # 9 Polarization: -14.02 SS G_CDS: 2.15 Total: -11.87 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.88 Total: 45.11 kcal Total: -71.88 5.12 -66.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894082185.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.029 kcal (2) G-P(sol) polarization free energy of solvation -71.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -279.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -274.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds