Wall clock time and date at job start Tue Mar 31 2020 13:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45202 * 109.46811 * 2 1 4 4 C 1.34228 * 116.99949 * 179.97438 * 3 2 1 5 5 O 1.20820 * 119.99821 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99999 * 179.72156 * 4 3 2 7 7 H 1.09006 * 109.46671 * 356.35723 * 6 4 3 8 8 C 1.52992 * 109.47245 * 236.35524 * 6 4 3 9 9 C 1.53002 * 109.47432 * 299.99992 * 8 6 4 10 10 C 1.53005 * 109.46954 * 300.00212 * 9 8 6 11 11 H 1.08998 * 109.46916 * 179.97438 * 10 9 8 12 12 N 1.46897 * 109.47022 * 300.00019 * 10 9 8 13 13 C 1.46907 * 110.99586 * 274.99691 * 12 10 9 14 14 C 1.50704 * 109.46803 * 180.02562 * 13 12 10 15 15 H 1.07998 * 119.99826 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99885 * 180.02562 * 14 13 12 17 17 N 1.31506 * 119.99882 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99897 * 359.97438 * 16 14 13 19 19 H 1.48494 * 109.47474 * 90.00215 * 18 16 14 20 20 H 1.48504 * 109.46983 * 210.00436 * 18 16 14 21 21 H 1.48504 * 109.47401 * 330.00262 * 18 16 14 22 22 C 1.53006 * 109.47015 * 59.99968 * 10 9 8 23 23 C 1.52997 * 109.46734 * 116.35401 * 6 4 3 24 24 H 1.08999 * 109.47011 * 180.02562 * 23 6 4 25 25 C 1.53006 * 109.47456 * 300.00144 * 23 6 4 26 26 F 1.39894 * 109.46789 * 66.00685 * 25 23 6 27 27 F 1.39897 * 109.47409 * 186.00884 * 25 23 6 28 28 F 1.39907 * 109.46880 * 306.00849 * 25 23 6 29 29 H 1.09001 * 109.47115 * 60.00088 * 1 2 3 30 30 H 1.09006 * 109.46682 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47406 * 299.99771 * 1 2 3 32 32 H 1.08993 * 109.47406 * 240.00229 * 2 1 3 33 33 H 1.09001 * 109.47115 * 119.99911 * 2 1 3 34 34 H 1.09003 * 109.47445 * 60.00356 * 8 6 4 35 35 H 1.08999 * 109.47059 * 180.02562 * 8 6 4 36 36 H 1.08999 * 109.46808 * 60.00080 * 9 8 6 37 37 H 1.08990 * 109.47431 * 180.02562 * 9 8 6 38 38 H 1.00895 * 111.00314 * 38.95228 * 12 10 9 39 39 H 1.08992 * 109.47234 * 300.00157 * 13 12 10 40 40 H 1.09000 * 109.46590 * 60.00435 * 13 12 10 41 41 H 0.97006 * 119.99901 * 179.97438 * 17 16 14 42 42 H 1.08999 * 109.47415 * 59.99724 * 22 10 9 43 43 H 1.08997 * 109.47067 * 180.02562 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9206 2.9376 -0.0058 7 1 3.1117 3.6649 -0.0755 8 6 4.8553 3.0975 -1.2064 9 6 5.9906 2.0765 -1.1085 10 6 6.7759 2.3095 0.1838 11 1 7.5845 1.5818 0.2538 12 7 7.3373 3.6669 0.1777 13 6 8.6215 3.7023 -0.5347 14 6 9.1658 5.1076 -0.5196 15 1 8.6127 5.8955 -0.0301 16 6 10.3692 5.3874 -1.1315 17 7 10.8443 6.6135 -1.1179 18 14 11.3254 4.0244 -1.9787 19 1 10.9065 3.9359 -3.4006 20 1 12.7786 4.3218 -1.9083 21 1 11.0512 2.7320 -1.3006 22 6 5.8412 2.1495 1.3845 23 6 4.7059 3.1704 1.2865 24 1 5.1221 4.1778 1.2822 25 6 3.7711 3.0105 2.4872 26 9 3.3440 1.6811 2.5717 27 9 4.4532 3.3566 3.6586 28 9 2.6614 3.8478 2.3291 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.2959 2.9316 -2.1271 35 1 5.2722 4.1046 -1.2107 36 1 5.5741 1.0693 -1.1040 37 1 6.6567 2.1907 -1.9636 38 1 6.6850 4.3262 -0.2197 39 1 9.3283 3.0340 -0.0429 40 1 8.4740 3.3804 -1.5656 41 1 11.6912 6.8103 -1.5481 42 1 5.4246 1.1422 1.3890 43 1 6.4005 2.3158 2.3051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894082187.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:35 Heat of formation + Delta-G solvation = -246.130040 kcal Electronic energy + Delta-G solvation = -29964.288196 eV Core-core repulsion = 25401.238112 eV Total energy + Delta-G solvation = -4563.050084 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.17358 -47.65723 -47.60782 -41.22061 -38.85142 -36.53016 -34.55074 -32.53181 -31.97260 -31.57148 -29.98660 -26.52050 -26.03070 -24.43845 -22.83646 -22.15794 -21.51204 -20.98183 -19.48382 -18.45298 -18.28092 -17.75820 -17.71217 -16.82229 -16.73745 -15.71417 -15.39069 -14.91619 -14.68638 -14.49252 -14.28870 -14.10260 -14.03337 -14.01287 -13.78015 -13.72998 -13.46714 -13.37684 -13.07721 -12.84494 -12.56684 -12.36532 -12.18279 -12.11287 -11.96061 -11.89324 -11.80469 -11.55251 -11.23287 -10.80794 -10.70412 -10.50942 -10.32858 -10.11453 -9.94348 -9.65087 -9.29605 -8.62518 -7.52728 -6.08336 -4.06394 2.03396 2.43044 2.68773 3.26451 3.34827 3.37294 3.66380 3.83967 3.98581 4.39878 4.40734 4.52159 4.61745 4.67200 4.72152 4.88065 5.00332 5.01080 5.09738 5.20768 5.24651 5.31159 5.35871 5.44275 5.48743 5.50070 5.67706 5.76927 5.78547 6.07383 6.12747 6.18709 6.25507 6.41146 6.57824 6.79302 7.00767 7.58620 7.64679 7.85287 8.27569 8.61418 8.99302 9.53795 11.04908 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.019340 B = 0.003749 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.419968 B = 7466.649305 C = 8255.726348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.355 6.355 4 C 0.462 3.538 5 O -0.485 6.485 6 C -0.077 4.077 7 H 0.112 0.888 8 C -0.105 4.105 9 C -0.169 4.169 10 C 0.094 3.906 11 H 0.081 0.919 12 N -0.676 5.676 13 C 0.164 3.836 14 C -0.516 4.516 15 H 0.079 0.921 16 C 0.069 3.931 17 N -0.900 5.900 18 Si 0.877 3.123 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.267 1.267 22 C -0.113 4.113 23 C -0.119 4.119 24 H 0.142 0.858 25 C 0.449 3.551 26 F -0.184 7.184 27 F -0.176 7.176 28 F -0.182 7.182 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.332 0.668 39 H 0.027 0.973 40 H -0.019 1.019 41 H 0.264 0.736 42 H 0.091 0.909 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.659 -11.850 2.523 23.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.273 6.273 4 C 0.305 3.695 5 O -0.372 6.372 6 C -0.096 4.096 7 H 0.130 0.870 8 C -0.142 4.142 9 C -0.207 4.207 10 C -0.017 4.017 11 H 0.099 0.901 12 N -0.308 5.308 13 C 0.036 3.964 14 C -0.555 4.555 15 H 0.097 0.903 16 C -0.133 4.133 17 N -0.539 5.539 18 Si 0.705 3.295 19 H -0.204 1.204 20 H -0.212 1.212 21 H -0.191 1.191 22 C -0.151 4.151 23 C -0.139 4.139 24 H 0.160 0.840 25 C 0.394 3.606 26 F -0.165 7.165 27 F -0.157 7.157 28 F -0.164 7.164 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.152 0.848 39 H 0.045 0.955 40 H -0.001 1.001 41 H 0.074 0.926 42 H 0.109 0.891 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -20.025 -12.118 3.122 23.614 hybrid contribution 0.159 -0.800 -1.184 1.438 sum -19.867 -12.918 1.937 23.776 Atomic orbital electron populations 1.21802 0.92718 1.02872 1.03542 1.23007 0.95297 0.80303 1.02591 1.86524 1.24490 1.32371 1.83874 1.23523 0.80649 0.92503 0.72796 1.90546 1.59561 1.43041 1.44097 1.21064 0.99097 0.92202 0.97258 0.87013 1.21476 0.95928 1.02152 0.94684 1.22536 0.97362 1.00987 0.99856 1.21369 0.95322 0.93340 0.91706 0.90084 1.60705 1.06467 1.03920 1.59693 1.20027 0.87158 0.98417 0.90750 1.21056 1.05856 0.93226 1.35332 0.90331 1.24901 0.97220 0.95287 0.95881 1.69896 1.20432 1.18946 1.44611 0.86834 0.79477 0.83069 0.80166 1.20395 1.21208 1.19126 1.21875 0.94358 0.98011 1.00885 1.22513 0.95375 1.07376 0.88609 0.84018 1.20735 0.80470 0.73542 0.85805 1.93153 1.90902 1.36015 1.96452 1.93203 1.79459 1.91896 1.51173 1.93180 1.55769 1.71784 1.95625 0.91504 0.90321 0.91438 0.91283 0.91142 0.90693 0.88977 0.88997 0.91333 0.84838 0.95540 1.00129 0.92645 0.89123 0.89928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.29 37.16 0.38 -0.63 16 2 C 0.06 0.57 6.19 37.16 0.23 0.80 16 3 O -0.36 -4.10 10.20 -39.25 -0.40 -4.50 16 4 C 0.46 5.77 4.31 36.01 0.16 5.92 16 5 O -0.49 -6.83 11.12 -18.75 -0.21 -7.04 16 6 C -0.08 -0.88 2.47 -91.77 -0.23 -1.10 16 7 H 0.11 1.08 7.66 -51.93 -0.40 0.68 16 8 C -0.10 -1.24 5.19 -26.73 -0.14 -1.38 16 9 C -0.17 -2.37 5.22 -26.73 -0.14 -2.51 16 10 C 0.09 1.47 2.85 -67.71 -0.19 1.28 16 11 H 0.08 1.36 7.80 -51.93 -0.41 0.95 16 12 N -0.68 -12.75 5.75 -107.98 -0.62 -13.38 16 13 C 0.16 3.80 4.31 -4.97 -0.02 3.78 16 14 C -0.52 -14.29 9.87 -34.44 -0.34 -14.63 16 15 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 17 N -0.90 -27.27 13.96 55.43 0.77 -26.49 16 18 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 22 C -0.11 -1.59 4.37 -26.73 -0.12 -1.71 16 23 C -0.12 -1.49 1.82 -90.62 -0.16 -1.65 16 24 H 0.14 1.75 7.21 -51.93 -0.37 1.38 16 25 C 0.45 5.72 2.63 37.16 0.10 5.81 16 26 F -0.18 -2.45 14.37 2.25 0.03 -2.42 16 27 F -0.18 -2.41 17.03 2.25 0.04 -2.37 16 28 F -0.18 -2.25 16.57 2.25 0.04 -2.21 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 33 H 0.07 0.68 8.13 -51.93 -0.42 0.25 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.10 6.26 -51.93 -0.32 0.78 16 36 H 0.09 1.31 5.38 -51.93 -0.28 1.03 16 37 H 0.07 1.03 7.45 -51.93 -0.39 0.65 16 38 H 0.33 5.88 5.56 -39.29 -0.22 5.66 16 39 H 0.03 0.64 7.11 -51.93 -0.37 0.27 16 40 H -0.02 -0.43 6.86 -51.93 -0.36 -0.79 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.09 1.30 5.19 -51.93 -0.27 1.03 16 43 H 0.08 1.20 7.96 -51.93 -0.41 0.79 16 LS Contribution 341.84 15.07 5.15 5.15 Total: -1.00 -30.76 341.84 -6.36 -37.12 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.92 Total: 3.68 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -0.57 Total: -4.15 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.15 Total: -39.87 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -0.61 Total: -11.55 kcal Atomic # 9 Polarization: -7.11 SS G_CDS: 0.11 Total: -7.01 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.76 -6.36 -37.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894082187.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -209.007 kcal (2) G-P(sol) polarization free energy of solvation -30.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds