Wall clock time and date at job start Tue Mar 31 2020 14:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38687 * 120.04356 * 359.97438 * 3 2 1 5 5 C 1.38208 * 120.08999 * 180.02562 * 4 3 2 6 6 C 1.38246 * 120.18261 * 0.02562 * 5 4 3 7 7 C 1.50692 * 119.96046 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47484 * 259.99675 * 7 6 5 9 9 C 1.47445 * 110.99805 * 69.87148 * 8 7 6 10 10 C 1.54314 * 107.23171 * 123.25801 * 9 8 7 11 11 C 1.55143 * 103.02083 * 22.28832 * 10 9 8 12 12 O 1.42901 * 110.99418 * 82.46927 * 11 10 9 13 13 C 1.50697 * 110.98927 * 206.25466 * 11 10 9 14 14 H 1.07999 * 120.00321 * 118.54689 * 13 11 10 15 15 C 1.37873 * 120.00097 * 298.54141 * 13 11 10 16 16 N 1.31517 * 119.99916 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00369 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47127 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47494 * 119.99717 * 17 15 13 20 20 H 1.48497 * 109.47193 * 240.00016 * 17 15 13 21 21 C 1.47838 * 111.00197 * 190.71713 * 8 7 6 22 22 C 1.38650 * 120.08322 * 359.94959 * 6 5 4 23 23 O 1.36005 * 120.04160 * 180.02562 * 22 6 5 24 24 C 1.38957 * 120.04606 * 179.72978 * 3 2 1 25 25 O 1.36086 * 120.08994 * 359.97390 * 24 3 2 26 26 C 1.42899 * 117.00105 * 90.00019 * 25 24 3 27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 29 29 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 30 30 H 1.08001 * 119.95597 * 0.02562 * 4 3 2 31 31 H 1.08003 * 119.91262 * 179.97438 * 5 4 3 32 32 H 1.08995 * 109.47075 * 19.99801 * 7 6 5 33 33 H 1.09007 * 109.47250 * 139.99379 * 7 6 5 34 34 H 1.08998 * 109.88832 * 242.66598 * 9 8 7 35 35 H 1.08999 * 109.88612 * 3.85388 * 9 8 7 36 36 H 1.09008 * 110.70347 * 140.66686 * 10 9 8 37 37 H 1.08999 * 110.71243 * 263.72643 * 10 9 8 38 38 H 0.96706 * 113.99569 * 61.45784 * 12 11 10 39 39 H 0.96998 * 120.00025 * 179.97438 * 16 15 13 40 40 H 1.08999 * 110.37763 * 332.46185 * 21 8 7 41 41 H 1.08999 * 110.37795 * 94.80889 * 21 8 7 42 42 H 0.96705 * 113.99512 * 90.00412 * 23 22 6 43 43 H 1.09005 * 109.47044 * 60.00071 * 26 25 24 44 44 H 1.09000 * 109.47541 * 179.97438 * 26 25 24 45 45 H 1.08997 * 109.47330 * 300.00633 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2921 2.3754 -0.0005 5 6 1.9186 3.6073 -0.0011 6 6 3.2989 3.6851 -0.0016 7 6 3.9768 5.0309 -0.0028 8 7 4.4115 5.3592 -1.3670 9 6 3.2546 5.6383 -2.2374 10 6 3.4535 7.0522 -2.8228 11 6 4.9851 7.2683 -2.7017 12 8 5.6761 6.6588 -3.7940 13 6 5.3174 8.7352 -2.6073 14 1 5.8121 9.1213 -1.7283 15 6 4.9901 9.5842 -3.6431 16 7 4.3882 9.1139 -4.7137 17 14 5.4027 11.4023 -3.5264 18 1 6.0738 11.6755 -2.2302 19 1 6.3084 11.7770 -4.6419 20 1 4.1532 12.2001 -3.6140 21 6 5.2992 6.5413 -1.3703 22 6 4.0603 2.5264 -0.0006 23 8 5.4181 2.6039 -0.0006 24 6 3.4341 1.2854 0.0057 25 8 4.1779 0.1458 0.0118 26 6 4.5379 -0.4008 -1.2585 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 0.2136 2.3189 -0.0005 31 1 1.3284 4.5118 -0.0019 32 1 3.2780 5.7900 0.3484 33 1 4.8436 5.0018 0.6576 34 1 3.2117 4.9059 -3.0435 35 1 2.3347 5.6048 -1.6536 36 1 3.1411 7.0846 -3.8666 37 1 2.9096 7.7924 -2.2360 38 1 5.4374 7.0177 -4.6597 39 1 4.1576 9.7113 -5.4422 40 1 5.0733 7.1880 -0.5224 41 1 6.3440 6.2316 -1.3445 42 1 5.8107 2.6270 0.8829 43 1 5.1255 0.3295 -1.8150 44 1 5.1283 -1.3051 -1.1109 45 1 3.6349 -0.6433 -1.8188 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895108855.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:52 Heat of formation + Delta-G solvation = -125.224926 kcal Electronic energy + Delta-G solvation = -28333.006374 eV Core-core repulsion = 24317.055869 eV Total energy + Delta-G solvation = -4015.950505 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.75735 -38.83723 -38.27876 -37.34735 -36.02454 -34.56312 -32.10953 -31.26244 -29.92086 -28.74869 -28.04818 -27.56417 -26.68009 -25.23581 -23.89167 -22.41147 -21.43198 -19.88025 -19.51205 -18.80345 -17.44648 -17.18544 -16.94160 -16.69848 -16.10773 -15.29049 -15.16104 -14.87277 -14.85873 -14.64456 -14.36447 -14.21805 -14.01699 -13.80167 -12.97662 -12.75329 -12.58149 -12.31733 -12.18944 -11.90233 -11.84387 -11.56690 -11.41465 -11.27667 -11.19858 -10.91686 -10.88298 -10.74060 -10.66090 -10.38687 -10.24354 -9.81396 -9.77726 -9.16422 -8.61352 -8.57432 -8.16968 -8.00054 -7.50533 -6.19415 -4.27555 1.05239 1.25004 2.99865 3.21155 3.29205 3.30167 3.34144 3.89441 4.30371 4.36493 4.67976 4.79063 4.90220 4.92303 4.98743 5.04325 5.10574 5.24508 5.31853 5.37552 5.42917 5.45162 5.63158 5.73129 5.77255 5.87607 6.00219 6.07790 6.12164 6.18048 6.20795 6.45862 6.48406 6.53672 6.72764 6.91894 6.99555 7.11496 7.44336 7.47554 7.52046 7.69667 7.80087 7.84056 7.86774 8.20089 8.75147 9.41233 9.56142 10.87386 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.023572 B = 0.002995 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.547258 B = 9346.370422 C = 9762.403821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.308 6.308 3 C 0.117 3.883 4 C -0.208 4.208 5 C -0.063 4.063 6 C -0.117 4.117 7 C 0.099 3.901 8 N -0.514 5.514 9 C 0.045 3.955 10 C -0.144 4.144 11 C 0.252 3.748 12 O -0.578 6.578 13 C -0.534 4.534 14 H 0.061 0.939 15 C 0.071 3.929 16 N -0.894 5.894 17 Si 0.899 3.101 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.284 1.284 21 C 0.060 3.940 22 C 0.155 3.845 23 O -0.471 6.471 24 C 0.030 3.970 25 O -0.322 6.322 26 C 0.038 3.962 27 H 0.099 0.901 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.035 0.965 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.376 0.624 39 H 0.265 0.735 40 H 0.045 0.955 41 H 0.071 0.929 42 H 0.388 0.612 43 H 0.051 0.949 44 H 0.089 0.911 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.726 -15.388 9.995 19.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.221 6.221 3 C 0.071 3.929 4 C -0.227 4.227 5 C -0.082 4.082 6 C -0.118 4.118 7 C -0.029 4.029 8 N -0.238 5.238 9 C -0.082 4.082 10 C -0.183 4.183 11 C 0.211 3.789 12 O -0.385 6.385 13 C -0.573 4.573 14 H 0.079 0.921 15 C -0.132 4.132 16 N -0.534 5.534 17 Si 0.726 3.274 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.210 1.210 21 C -0.067 4.067 22 C 0.109 3.891 23 O -0.281 6.281 24 C -0.015 4.015 25 O -0.239 6.239 26 C -0.056 4.056 27 H 0.117 0.883 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.225 0.775 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.090 0.910 42 H 0.244 0.756 43 H 0.070 0.930 44 H 0.108 0.892 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.156 -16.419 9.672 20.355 hybrid contribution -0.949 2.252 0.053 2.444 sum -8.105 -14.167 9.725 18.999 Atomic orbital electron populations 1.23080 0.78589 1.03852 1.01424 1.86138 1.21081 1.26281 1.88638 1.19198 0.91144 0.84823 0.97709 1.21090 0.99997 0.91656 1.09913 1.20825 0.93534 0.97208 0.96654 1.20099 0.93156 0.95267 1.03281 1.20945 0.98094 0.91200 0.92671 1.63617 1.15898 1.37644 1.06618 1.22843 0.90937 0.98464 0.95997 1.23255 1.00917 0.92751 1.01395 1.19528 0.86543 0.89640 0.83151 1.86162 1.68842 1.65287 1.18233 1.21589 1.39296 0.92666 1.03735 0.92098 1.25004 0.93892 0.99162 0.95093 1.69755 1.40914 1.35766 1.06943 0.86435 0.78104 0.84571 0.78254 1.19697 1.20805 1.20983 1.22987 0.96729 0.88957 0.97987 1.18228 0.83783 0.89632 0.97500 1.84900 1.14771 1.95755 1.32652 1.18303 0.86701 0.86441 1.10060 1.86027 1.70255 1.38154 1.29418 1.22972 0.99465 0.98488 0.84705 0.88294 0.92598 0.92605 0.84991 0.85190 0.94314 0.90533 0.92046 0.94696 0.90569 0.92753 0.77530 0.92493 0.93676 0.91046 0.75587 0.93012 0.89226 0.93940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.79 10.28 -34.31 -0.35 -4.14 16 3 C 0.12 1.58 6.70 -39.15 -0.26 1.31 16 4 C -0.21 -2.46 9.04 -39.43 -0.36 -2.82 16 5 C -0.06 -0.82 8.82 -39.59 -0.35 -1.17 16 6 C -0.12 -1.71 4.96 -104.47 -0.52 -2.23 16 7 C 0.10 1.58 4.36 -4.98 -0.02 1.55 16 8 N -0.51 -10.18 5.15 -232.70 -1.20 -11.37 16 9 C 0.05 0.91 6.40 -2.84 -0.02 0.89 16 10 C -0.14 -3.34 5.37 -24.91 -0.13 -3.48 16 11 C 0.25 6.31 0.87 -89.63 -0.08 6.24 16 12 O -0.58 -15.47 13.16 -35.23 -0.46 -15.94 16 13 C -0.53 -14.35 8.27 -34.44 -0.28 -14.63 16 14 H 0.06 1.63 7.79 -52.49 -0.41 1.22 16 15 C 0.07 1.88 5.29 -17.82 -0.09 1.78 16 16 N -0.89 -23.96 10.75 55.43 0.60 -23.36 16 17 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 21 C 0.06 1.33 5.86 -2.30 -0.01 1.31 16 22 C 0.15 2.32 6.69 -39.15 -0.26 2.06 16 23 O -0.47 -6.86 12.51 -34.33 -0.43 -7.28 16 24 C 0.03 0.44 5.75 -39.03 -0.22 0.22 16 25 O -0.32 -4.72 9.98 -45.27 -0.45 -5.17 16 26 C 0.04 0.47 11.13 101.05 1.13 1.59 16 27 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.38 7.66 -51.93 -0.40 -0.01 16 29 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 30 H 0.13 1.20 6.29 -52.49 -0.33 0.87 16 31 H 0.13 1.49 7.64 -52.48 -0.40 1.08 16 32 H 0.04 0.59 7.82 -51.93 -0.41 0.19 16 33 H 0.08 1.13 7.78 -51.92 -0.40 0.73 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.03 0.62 6.20 -51.93 -0.32 0.30 16 36 H 0.08 1.89 7.54 -51.92 -0.39 1.50 16 37 H 0.05 1.28 8.04 -51.93 -0.42 0.86 16 38 H 0.38 10.09 7.56 45.56 0.34 10.44 16 39 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 40 H 0.04 0.94 7.70 -51.93 -0.40 0.54 16 41 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 42 H 0.39 3.78 9.06 45.56 0.41 4.19 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 367.88 15.07 5.54 5.54 Total: -1.00 -31.54 367.88 -7.47 -39.01 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -5.19 Total: 13.28 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -0.50 Total: -6.19 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: -0.60 Total: -34.74 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -1.70 Total: -32.53 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.54 -7.47 -39.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895108855.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.219 kcal (2) G-P(sol) polarization free energy of solvation -31.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds