Wall clock time and date at job start Tue Mar 31 2020 14:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38687 * 120.04356 * 359.97438 * 3 2 1 5 5 C 1.38208 * 120.08999 * 180.02562 * 4 3 2 6 6 C 1.38246 * 120.18261 * 0.02562 * 5 4 3 7 7 C 1.50692 * 119.96046 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47484 * 259.99675 * 7 6 5 9 9 C 1.47445 * 110.99805 * 69.87148 * 8 7 6 10 10 C 1.54314 * 107.23171 * 123.25801 * 9 8 7 11 11 C 1.55143 * 103.02083 * 22.28832 * 10 9 8 12 12 O 1.42901 * 110.99418 * 82.46927 * 11 10 9 13 13 C 1.50697 * 110.98927 * 206.25466 * 11 10 9 14 14 H 1.07999 * 120.00321 * 118.54689 * 13 11 10 15 15 C 1.37873 * 120.00097 * 298.54141 * 13 11 10 16 16 N 1.31517 * 119.99916 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00369 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47127 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47494 * 119.99717 * 17 15 13 20 20 H 1.48497 * 109.47193 * 240.00016 * 17 15 13 21 21 C 1.47838 * 111.00197 * 190.71713 * 8 7 6 22 22 C 1.38650 * 120.08322 * 359.94959 * 6 5 4 23 23 O 1.36005 * 120.04160 * 180.02562 * 22 6 5 24 24 C 1.38957 * 120.04606 * 179.72978 * 3 2 1 25 25 O 1.36086 * 120.08994 * 359.97390 * 24 3 2 26 26 C 1.42899 * 117.00105 * 90.00019 * 25 24 3 27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 29 29 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 30 30 H 1.08001 * 119.95597 * 0.02562 * 4 3 2 31 31 H 1.08003 * 119.91262 * 179.97438 * 5 4 3 32 32 H 1.08995 * 109.47075 * 19.99801 * 7 6 5 33 33 H 1.09007 * 109.47250 * 139.99379 * 7 6 5 34 34 H 1.08998 * 109.88832 * 242.66598 * 9 8 7 35 35 H 1.08999 * 109.88612 * 3.85388 * 9 8 7 36 36 H 1.09008 * 110.70347 * 140.66686 * 10 9 8 37 37 H 1.08999 * 110.71243 * 263.72643 * 10 9 8 38 38 H 0.96706 * 113.99569 * 61.45784 * 12 11 10 39 39 H 0.96998 * 120.00025 * 179.97438 * 16 15 13 40 40 H 1.08999 * 110.37763 * 332.46185 * 21 8 7 41 41 H 1.08999 * 110.37795 * 94.80889 * 21 8 7 42 42 H 0.96705 * 113.99512 * 90.00412 * 23 22 6 43 43 H 1.09005 * 109.47044 * 60.00071 * 26 25 24 44 44 H 1.09000 * 109.47541 * 179.97438 * 26 25 24 45 45 H 1.08997 * 109.47330 * 300.00633 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2921 2.3754 -0.0005 5 6 1.9186 3.6073 -0.0011 6 6 3.2989 3.6851 -0.0016 7 6 3.9768 5.0309 -0.0028 8 7 4.4115 5.3592 -1.3670 9 6 3.2546 5.6383 -2.2374 10 6 3.4535 7.0522 -2.8228 11 6 4.9851 7.2683 -2.7017 12 8 5.6761 6.6588 -3.7940 13 6 5.3174 8.7352 -2.6073 14 1 5.8121 9.1213 -1.7283 15 6 4.9901 9.5842 -3.6431 16 7 4.3882 9.1139 -4.7137 17 14 5.4027 11.4023 -3.5264 18 1 6.0738 11.6755 -2.2302 19 1 6.3084 11.7770 -4.6419 20 1 4.1532 12.2001 -3.6140 21 6 5.2992 6.5413 -1.3703 22 6 4.0603 2.5264 -0.0006 23 8 5.4181 2.6039 -0.0006 24 6 3.4341 1.2854 0.0057 25 8 4.1779 0.1458 0.0118 26 6 4.5379 -0.4008 -1.2585 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 0.2136 2.3189 -0.0005 31 1 1.3284 4.5118 -0.0019 32 1 3.2780 5.7900 0.3484 33 1 4.8436 5.0018 0.6576 34 1 3.2117 4.9059 -3.0435 35 1 2.3347 5.6048 -1.6536 36 1 3.1411 7.0846 -3.8666 37 1 2.9096 7.7924 -2.2360 38 1 5.4374 7.0177 -4.6597 39 1 4.1576 9.7113 -5.4422 40 1 5.0733 7.1880 -0.5224 41 1 6.3440 6.2316 -1.3445 42 1 5.8107 2.6270 0.8829 43 1 5.1255 0.3295 -1.8150 44 1 5.1283 -1.3051 -1.1109 45 1 3.6349 -0.6433 -1.8188 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895108855.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:51 Heat of formation + Delta-G solvation = -149.929648 kcal Electronic energy + Delta-G solvation = -28334.077651 eV Core-core repulsion = 24317.055869 eV Total energy + Delta-G solvation = -4017.021782 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.75350 -40.17806 -39.47113 -38.52051 -37.13108 -36.26123 -34.17043 -32.64199 -30.95519 -30.14293 -29.80255 -28.39513 -27.69690 -26.77666 -25.46932 -23.40854 -22.62947 -21.42371 -21.36495 -19.78391 -19.02517 -18.39848 -18.18008 -17.68846 -17.03223 -16.91490 -16.81698 -16.23421 -16.14070 -15.79911 -15.73872 -15.45005 -15.26793 -14.95436 -14.40230 -14.33009 -13.85923 -13.59673 -13.45339 -13.25664 -13.12530 -13.02631 -12.86628 -12.68413 -12.65219 -12.47088 -12.26762 -12.21598 -12.12239 -11.83575 -11.74232 -11.59757 -11.08103 -10.81699 -10.59388 -10.06073 -9.61091 -9.17470 -9.01410 -8.20270 -6.36260 0.06088 0.23001 1.39303 1.42970 1.53357 2.17974 2.30219 2.39240 2.90246 3.04155 3.32297 3.41045 3.79071 3.87973 3.98633 4.06870 4.13928 4.21640 4.36345 4.37372 4.40957 4.44130 4.44242 4.47546 4.48885 4.64191 4.73758 4.74665 4.77766 4.82839 4.93520 5.07450 5.10247 5.17838 5.29646 5.44733 5.49937 5.51050 5.56702 5.81872 6.00602 6.11275 6.26270 6.35206 6.54063 6.70086 6.89230 7.35365 7.46938 8.85008 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.023572 B = 0.002995 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.547258 B = 9346.370422 C = 9762.403821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.326 6.326 3 C 0.116 3.884 4 C -0.201 4.201 5 C -0.062 4.062 6 C -0.133 4.133 7 C 0.101 3.899 8 N -0.523 5.523 9 C 0.057 3.943 10 C -0.133 4.133 11 C 0.233 3.767 12 O -0.590 6.590 13 C -0.559 4.559 14 H 0.055 0.945 15 C 0.030 3.970 16 N -0.911 5.911 17 Si 0.960 3.040 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.277 1.277 21 C 0.070 3.930 22 C 0.146 3.854 23 O -0.490 6.490 24 C 0.007 3.993 25 O -0.335 6.335 26 C 0.038 3.962 27 H 0.119 0.881 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.164 0.836 31 H 0.149 0.851 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.370 0.630 39 H 0.268 0.732 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.405 0.595 43 H 0.036 0.964 44 H 0.114 0.886 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.370 -15.663 11.098 21.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.240 6.240 3 C 0.069 3.931 4 C -0.219 4.219 5 C -0.080 4.080 6 C -0.135 4.135 7 C -0.026 4.026 8 N -0.247 5.247 9 C -0.070 4.070 10 C -0.173 4.173 11 C 0.193 3.807 12 O -0.397 6.397 13 C -0.597 4.597 14 H 0.073 0.927 15 C -0.171 4.171 16 N -0.550 5.550 17 Si 0.786 3.214 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.203 1.203 21 C -0.057 4.057 22 C 0.099 3.901 23 O -0.302 6.302 24 C -0.038 4.038 25 O -0.252 6.252 26 C -0.056 4.056 27 H 0.138 0.862 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.181 0.819 31 H 0.166 0.834 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.218 0.782 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.263 0.737 43 H 0.055 0.945 44 H 0.133 0.867 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.807 -16.711 10.799 21.759 hybrid contribution -0.473 2.236 -0.282 2.303 sum -9.281 -14.475 10.517 20.156 Atomic orbital electron populations 1.23423 0.76166 1.05743 1.02563 1.86122 1.23602 1.25900 1.88335 1.19336 0.90928 0.85842 0.96947 1.21380 1.01463 0.90605 1.08474 1.21066 0.92905 0.98408 0.95660 1.20026 0.93975 0.94265 1.05212 1.20977 0.98944 0.92274 0.90426 1.63525 1.15814 1.36276 1.09126 1.22684 0.92369 0.95849 0.96117 1.23043 0.99479 0.94618 1.00124 1.19821 0.87657 0.89461 0.83787 1.86157 1.69508 1.65559 1.18448 1.21840 1.39952 0.93960 1.03948 0.92684 1.25702 0.93678 1.02959 0.94773 1.69845 1.41001 1.36960 1.07242 0.85482 0.77946 0.79889 0.78110 1.19456 1.20689 1.20299 1.22802 0.96691 0.89638 0.96611 1.18364 0.83821 0.90044 0.97838 1.84841 1.15106 1.95815 1.34420 1.18522 0.87618 0.86403 1.11278 1.85996 1.70496 1.38278 1.30449 1.23069 0.99628 0.98896 0.84029 0.86247 0.91638 0.91136 0.81883 0.83380 0.93122 0.89728 0.93213 0.91797 0.92787 0.93354 0.78173 0.92301 0.92762 0.92294 0.73674 0.94525 0.86732 0.93794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.30 16 2 O -0.33 -7.37 10.28 -79.50 -0.82 -8.18 16 3 C 0.12 2.91 6.70 22.55 0.15 3.06 16 4 C -0.20 -4.19 9.04 22.37 0.20 -3.98 16 5 C -0.06 -1.43 8.82 22.26 0.20 -1.23 16 6 C -0.13 -3.71 4.96 -19.77 -0.10 -3.81 16 7 C 0.10 3.06 4.36 85.55 0.37 3.44 16 8 N -0.52 -20.35 5.15 -890.13 -4.58 -24.93 16 9 C 0.06 2.26 6.40 86.64 0.55 2.81 16 10 C -0.13 -6.22 5.37 31.77 0.17 -6.04 16 11 C 0.23 11.80 0.87 -10.15 -0.01 11.80 16 12 O -0.59 -32.34 13.16 -148.98 -1.96 -34.30 16 13 C -0.56 -30.24 8.27 25.60 0.21 -30.03 16 14 H 0.05 2.96 7.79 -2.91 -0.02 2.94 16 15 C 0.03 1.56 5.29 84.65 0.45 2.01 16 16 N -0.91 -49.17 10.75 21.45 0.23 -48.94 16 17 Si 0.96 42.22 29.54 68.60 2.03 44.25 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 21 C 0.07 3.07 5.86 86.78 0.51 3.58 16 22 C 0.15 4.27 6.69 22.55 0.15 4.42 16 23 O -0.49 -14.23 12.51 -79.68 -1.00 -15.23 16 24 C 0.01 0.19 5.75 22.63 0.13 0.32 16 25 O -0.34 -9.71 9.98 -70.37 -0.70 -10.42 16 26 C 0.04 0.91 11.13 113.37 1.26 2.17 16 27 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 29 H 0.07 0.67 7.66 -2.38 -0.02 0.65 16 30 H 0.16 2.29 6.29 -2.91 -0.02 2.27 16 31 H 0.15 2.84 7.64 -2.91 -0.02 2.82 16 32 H 0.05 1.42 7.82 -2.39 -0.02 1.40 16 33 H 0.08 2.39 7.78 -2.38 -0.02 2.37 16 34 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.06 2.12 6.20 -2.39 -0.01 2.10 16 36 H 0.05 2.72 7.54 -2.38 -0.02 2.70 16 37 H 0.05 2.26 8.04 -2.39 -0.02 2.24 16 38 H 0.37 20.54 7.56 -74.05 -0.56 19.98 16 39 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 40 H 0.05 2.25 7.70 -2.39 -0.02 2.23 16 41 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 42 H 0.40 7.88 9.06 -74.05 -0.67 7.21 16 43 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 44 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -67.76 367.88 -1.64 -69.40 By element: Atomic # 1 Polarization: 38.74 SS G_CDS: -0.20 Total: 38.54 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: 5.36 Total: -10.19 kcal Atomic # 7 Polarization: -69.52 SS G_CDS: -4.35 Total: -73.87 kcal Atomic # 8 Polarization: -63.65 SS G_CDS: -4.48 Total: -68.13 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -67.76 -1.64 -69.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895108855.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.527 kcal (2) G-P(sol) polarization free energy of solvation -67.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds