Wall clock time and date at job start Tue Mar 31 2020 14:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35998 * 116.99289 * 2 1 4 4 C 1.38685 * 120.05127 * 359.97369 * 3 2 1 5 5 C 1.38201 * 120.09303 * 179.77016 * 4 3 2 6 6 C 1.38251 * 120.17864 * 0.50789 * 5 4 3 7 7 C 1.50707 * 119.95753 * 179.76509 * 6 5 4 8 8 N 1.46900 * 109.46999 * 259.72843 * 7 6 5 9 9 C 1.48720 * 111.01831 * 74.48981 * 8 7 6 10 10 C 1.54381 * 104.51692 * 158.96284 * 9 8 7 11 11 C 1.54257 * 105.14978 * 336.27274 * 10 9 8 12 12 O 1.42910 * 110.32027 * 241.04997 * 11 10 9 13 13 C 1.50697 * 110.32628 * 118.84329 * 11 10 9 14 14 H 1.07995 * 120.00073 * 241.44522 * 13 11 10 15 15 C 1.37883 * 119.99811 * 61.45328 * 13 11 10 16 16 N 1.31514 * 119.99933 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 119.99722 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47538 * 0.02562 * 17 15 13 19 19 H 1.48510 * 109.46864 * 119.99931 * 17 15 13 20 20 H 1.48499 * 109.47368 * 239.99818 * 17 15 13 21 21 C 1.48567 * 110.99718 * 189.99963 * 8 7 6 22 22 C 1.38648 * 120.08925 * 359.49289 * 6 5 4 23 23 O 1.35993 * 120.04682 * 180.27265 * 22 6 5 24 24 C 1.38966 * 120.04260 * 180.02562 * 3 2 1 25 25 O 1.36089 * 120.08738 * 359.95026 * 24 3 2 26 26 C 1.42907 * 116.99948 * 270.02501 * 25 24 3 27 27 H 1.09001 * 109.47085 * 60.00841 * 1 2 3 28 28 H 1.09005 * 109.46271 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47536 * 300.00042 * 1 2 3 30 30 H 1.08006 * 119.95189 * 0.02562 * 4 3 2 31 31 H 1.08003 * 119.91657 * 180.25528 * 5 4 3 32 32 H 1.08997 * 109.47211 * 139.72254 * 7 6 5 33 33 H 1.08999 * 109.46541 * 19.72444 * 7 6 5 34 34 H 1.09004 * 110.38960 * 40.24251 * 9 8 7 35 35 H 1.08996 * 110.50963 * 277.74694 * 9 8 7 36 36 H 1.09002 * 110.32526 * 217.32092 * 10 9 8 37 37 H 1.08998 * 110.32190 * 95.21733 * 10 9 8 38 38 H 0.96699 * 114.00154 * 298.54485 * 12 11 10 39 39 H 0.97002 * 119.99478 * 180.02562 * 16 15 13 40 40 H 1.08999 * 110.41133 * 82.17552 * 21 8 7 41 41 H 1.09001 * 110.41003 * 319.73948 * 21 8 7 42 42 H 0.96706 * 113.99774 * 89.99659 * 23 22 6 43 43 H 1.08995 * 109.47000 * 60.00476 * 26 25 24 44 44 H 1.09001 * 109.46641 * 180.02562 * 26 25 24 45 45 H 1.08996 * 109.46894 * 300.00012 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2919 2.3755 -0.0006 5 6 1.9182 3.6074 0.0042 6 6 3.2985 3.6853 -0.0010 7 6 3.9763 5.0313 -0.0011 8 7 4.4118 5.3602 -1.3650 9 6 3.2552 5.7497 -2.2149 10 6 3.8804 6.5575 -3.3724 11 6 5.2180 7.0885 -2.8172 12 8 5.2259 8.5175 -2.8238 13 6 6.3704 6.5539 -3.6280 14 1 7.1204 5.9354 -3.1578 15 6 6.4671 6.8547 -4.9701 16 7 5.5541 7.6085 -5.5425 17 14 7.8959 6.1927 -5.9749 18 1 8.7790 5.3776 -5.1026 19 1 7.3748 5.3473 -7.0791 20 1 8.6694 7.3263 -6.5422 21 6 5.2899 6.5585 -1.3690 22 6 4.0601 2.5267 -0.0005 23 8 5.4178 2.6043 0.0000 24 6 3.4340 1.2858 -0.0005 25 8 4.1779 0.1462 0.0000 26 6 4.5325 -0.3965 1.2735 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3632 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 0.2133 2.3189 -0.0006 31 1 1.3279 4.5118 0.0080 32 1 4.8426 5.0020 0.6599 33 1 3.2771 5.7902 0.3499 34 1 2.5607 6.3710 -1.6494 35 1 2.7485 4.8646 -2.5992 36 1 3.2297 7.3869 -3.6500 37 1 4.0571 5.9117 -4.2325 38 1 5.1377 8.9073 -3.7043 39 1 5.6220 7.8198 -6.4868 40 1 6.3132 6.2809 -1.1161 41 1 4.9147 7.3071 -0.6712 42 1 5.8102 2.6270 0.8836 43 1 3.6272 -0.6376 1.8305 44 1 5.1236 -1.3012 1.1310 45 1 5.1176 0.3355 1.8302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895108886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:55 Heat of formation + Delta-G solvation = -122.349239 kcal Electronic energy + Delta-G solvation = -28394.978947 eV Core-core repulsion = 24379.153142 eV Total energy + Delta-G solvation = -4015.825806 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.77339 -38.81685 -38.27792 -37.37692 -36.04326 -34.68391 -32.01777 -31.35904 -29.95789 -28.76909 -27.88825 -27.52927 -26.73446 -25.13830 -23.84142 -22.44971 -21.39905 -20.15680 -19.36588 -18.82550 -17.46893 -17.20139 -16.91771 -16.76737 -16.10186 -15.39154 -15.14973 -14.81782 -14.77551 -14.65937 -14.51752 -14.08578 -13.87417 -13.74613 -13.14345 -12.78302 -12.66154 -12.36915 -12.17220 -11.94841 -11.80073 -11.63708 -11.57632 -11.11947 -11.05064 -10.98546 -10.78679 -10.71335 -10.43816 -10.35505 -10.21720 -9.90013 -9.77449 -8.96550 -8.62035 -8.48371 -8.17537 -8.02527 -7.69865 -6.07922 -4.12350 1.06648 1.23055 3.00062 3.32255 3.34623 3.40370 3.47137 3.74042 4.28276 4.44350 4.63768 4.75296 4.86484 4.91556 4.97266 5.05491 5.16120 5.20377 5.22802 5.24774 5.32599 5.41378 5.49845 5.70014 5.75233 5.87696 6.02475 6.05215 6.13190 6.20765 6.26893 6.42421 6.46286 6.48117 6.59507 6.94366 6.97982 7.14512 7.30419 7.42233 7.63962 7.75192 7.78522 7.85559 7.95252 8.31129 8.90761 9.50478 9.59384 10.99746 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.016147 B = 0.003441 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.621652 B = 8134.619284 C = 8645.447590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.308 6.308 3 C 0.118 3.882 4 C -0.208 4.208 5 C -0.063 4.063 6 C -0.116 4.116 7 C 0.093 3.907 8 N -0.486 5.486 9 C 0.034 3.966 10 C -0.120 4.120 11 C 0.249 3.751 12 O -0.596 6.596 13 C -0.514 4.514 14 H 0.063 0.937 15 C 0.065 3.935 16 N -0.902 5.902 17 Si 0.898 3.102 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.285 1.285 21 C 0.054 3.946 22 C 0.155 3.845 23 O -0.464 6.464 24 C 0.031 3.969 25 O -0.314 6.314 26 C 0.036 3.964 27 H 0.057 0.943 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.133 0.867 31 H 0.130 0.870 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.026 0.974 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.382 0.618 39 H 0.264 0.736 40 H 0.077 0.923 41 H 0.029 0.971 42 H 0.381 0.619 43 H 0.043 0.957 44 H 0.092 0.908 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.187 -12.183 15.317 22.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.221 6.221 3 C 0.072 3.928 4 C -0.226 4.226 5 C -0.082 4.082 6 C -0.117 4.117 7 C -0.035 4.035 8 N -0.210 5.210 9 C -0.094 4.094 10 C -0.159 4.159 11 C 0.210 3.790 12 O -0.405 6.405 13 C -0.552 4.552 14 H 0.081 0.919 15 C -0.136 4.136 16 N -0.543 5.543 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.073 4.073 22 C 0.108 3.892 23 O -0.273 6.273 24 C -0.014 4.014 25 O -0.230 6.230 26 C -0.059 4.059 27 H 0.075 0.925 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.096 0.904 33 H 0.057 0.943 34 H 0.044 0.956 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.232 0.768 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.047 0.953 42 H 0.237 0.763 43 H 0.062 0.938 44 H 0.110 0.890 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.784 -12.969 14.831 21.997 hybrid contribution -0.122 0.536 -0.292 0.622 sum -9.906 -12.433 14.540 21.543 Atomic orbital electron populations 1.23080 0.78579 1.03871 1.01413 1.86145 1.21097 1.26252 1.88615 1.19186 0.91079 0.84860 0.97665 1.21081 0.99986 0.91648 1.09924 1.20792 0.93470 0.97199 0.96713 1.20040 0.93158 0.95117 1.03412 1.20959 0.98156 0.91482 0.92929 1.65385 1.13820 1.34623 1.07194 1.23194 0.92383 0.98044 0.95775 1.22842 0.97734 0.98516 0.96781 1.19250 0.92077 0.78503 0.89216 1.86079 1.96818 1.21967 1.35601 1.21695 1.09058 1.30568 0.93918 0.91862 1.24999 0.96195 0.94738 0.97681 1.69710 1.34295 1.38116 1.12178 0.86431 0.82376 0.78624 0.79939 1.19612 1.21026 1.21097 1.22985 0.96950 0.89249 0.98120 1.18182 0.83847 0.89661 0.97471 1.85047 1.14632 1.95749 1.31830 1.18239 0.86650 0.86510 1.10022 1.86213 1.70203 1.38170 1.28408 1.22933 0.99397 0.98485 0.85065 0.92453 0.88287 0.92735 0.84957 0.85223 0.90444 0.94331 0.95587 0.91774 0.93210 0.90681 0.76780 0.92648 0.90436 0.95306 0.76332 0.93825 0.88991 0.94153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.81 10.28 -34.33 -0.35 -4.16 16 3 C 0.12 1.60 6.70 -39.15 -0.26 1.34 16 4 C -0.21 -2.44 9.04 -39.43 -0.36 -2.80 16 5 C -0.06 -0.80 9.58 -39.59 -0.38 -1.18 16 6 C -0.12 -1.71 5.08 -104.46 -0.53 -2.24 16 7 C 0.09 1.47 4.62 -4.97 -0.02 1.44 16 8 N -0.49 -9.81 5.32 -231.26 -1.23 -11.04 16 9 C 0.03 0.69 6.07 -2.09 -0.01 0.67 16 10 C -0.12 -2.89 5.55 -25.35 -0.14 -3.03 16 11 C 0.25 6.38 1.05 -90.39 -0.10 6.28 16 12 O -0.60 -15.79 12.94 -35.23 -0.46 -16.25 16 13 C -0.51 -14.38 8.10 -34.44 -0.28 -14.66 16 14 H 0.06 1.80 7.53 -52.49 -0.40 1.41 16 15 C 0.06 1.78 5.02 -17.82 -0.09 1.69 16 16 N -0.90 -24.88 10.82 55.43 0.60 -24.28 16 17 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 C 0.05 1.21 5.74 -2.18 -0.01 1.20 16 22 C 0.15 2.37 6.69 -39.15 -0.26 2.10 16 23 O -0.46 -7.05 12.51 -34.30 -0.43 -7.48 16 24 C 0.03 0.46 5.75 -39.03 -0.22 0.24 16 25 O -0.31 -4.73 9.99 -45.28 -0.45 -5.18 16 26 C 0.04 0.37 11.13 101.05 1.13 1.49 16 27 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 28 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.33 7.66 -51.93 -0.40 -0.06 16 30 H 0.13 1.18 6.29 -52.48 -0.33 0.85 16 31 H 0.13 1.42 8.03 -52.48 -0.42 1.00 16 32 H 0.08 1.12 7.79 -51.93 -0.40 0.72 16 33 H 0.04 0.56 7.63 -51.93 -0.40 0.17 16 34 H 0.03 0.48 7.75 -51.93 -0.40 0.08 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.05 1.19 7.98 -51.93 -0.41 0.78 16 37 H 0.07 2.00 7.23 -51.93 -0.38 1.63 16 38 H 0.38 10.24 7.33 45.56 0.33 10.57 16 39 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.08 1.75 7.67 -51.93 -0.40 1.35 16 41 H 0.03 0.61 7.94 -51.93 -0.41 0.20 16 42 H 0.38 3.68 9.06 45.56 0.41 4.10 16 43 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 369.23 15.07 5.56 5.56 Total: -1.00 -33.19 369.23 -7.58 -40.76 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -5.25 Total: 11.57 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -0.55 Total: -6.25 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: -0.63 Total: -35.32 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -1.69 Total: -33.07 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.19 -7.58 -40.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895108886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.587 kcal (2) G-P(sol) polarization free energy of solvation -33.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds