Wall clock time and date at job start Tue Mar 31 2020 14:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35998 * 116.99289 * 2 1 4 4 C 1.38685 * 120.05127 * 359.97369 * 3 2 1 5 5 C 1.38201 * 120.09303 * 179.77016 * 4 3 2 6 6 C 1.38251 * 120.17864 * 0.50789 * 5 4 3 7 7 C 1.50707 * 119.95753 * 179.76509 * 6 5 4 8 8 N 1.46900 * 109.46999 * 259.72843 * 7 6 5 9 9 C 1.48720 * 111.01831 * 74.48981 * 8 7 6 10 10 C 1.54381 * 104.51692 * 158.96284 * 9 8 7 11 11 C 1.54257 * 105.14978 * 336.27274 * 10 9 8 12 12 O 1.42910 * 110.32027 * 241.04997 * 11 10 9 13 13 C 1.50697 * 110.32628 * 118.84329 * 11 10 9 14 14 H 1.07995 * 120.00073 * 241.44522 * 13 11 10 15 15 C 1.37883 * 119.99811 * 61.45328 * 13 11 10 16 16 N 1.31514 * 119.99933 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 119.99722 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47538 * 0.02562 * 17 15 13 19 19 H 1.48510 * 109.46864 * 119.99931 * 17 15 13 20 20 H 1.48499 * 109.47368 * 239.99818 * 17 15 13 21 21 C 1.48567 * 110.99718 * 189.99963 * 8 7 6 22 22 C 1.38648 * 120.08925 * 359.49289 * 6 5 4 23 23 O 1.35993 * 120.04682 * 180.27265 * 22 6 5 24 24 C 1.38966 * 120.04260 * 180.02562 * 3 2 1 25 25 O 1.36089 * 120.08738 * 359.95026 * 24 3 2 26 26 C 1.42907 * 116.99948 * 270.02501 * 25 24 3 27 27 H 1.09001 * 109.47085 * 60.00841 * 1 2 3 28 28 H 1.09005 * 109.46271 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47536 * 300.00042 * 1 2 3 30 30 H 1.08006 * 119.95189 * 0.02562 * 4 3 2 31 31 H 1.08003 * 119.91657 * 180.25528 * 5 4 3 32 32 H 1.08997 * 109.47211 * 139.72254 * 7 6 5 33 33 H 1.08999 * 109.46541 * 19.72444 * 7 6 5 34 34 H 1.09004 * 110.38960 * 40.24251 * 9 8 7 35 35 H 1.08996 * 110.50963 * 277.74694 * 9 8 7 36 36 H 1.09002 * 110.32526 * 217.32092 * 10 9 8 37 37 H 1.08998 * 110.32190 * 95.21733 * 10 9 8 38 38 H 0.96699 * 114.00154 * 298.54485 * 12 11 10 39 39 H 0.97002 * 119.99478 * 180.02562 * 16 15 13 40 40 H 1.08999 * 110.41133 * 82.17552 * 21 8 7 41 41 H 1.09001 * 110.41003 * 319.73948 * 21 8 7 42 42 H 0.96706 * 113.99774 * 89.99659 * 23 22 6 43 43 H 1.08995 * 109.47000 * 60.00476 * 26 25 24 44 44 H 1.09001 * 109.46641 * 180.02562 * 26 25 24 45 45 H 1.08996 * 109.46894 * 300.00012 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2919 2.3755 -0.0006 5 6 1.9182 3.6074 0.0042 6 6 3.2985 3.6853 -0.0010 7 6 3.9763 5.0313 -0.0011 8 7 4.4118 5.3602 -1.3650 9 6 3.2552 5.7497 -2.2149 10 6 3.8804 6.5575 -3.3724 11 6 5.2180 7.0885 -2.8172 12 8 5.2259 8.5175 -2.8238 13 6 6.3704 6.5539 -3.6280 14 1 7.1204 5.9354 -3.1578 15 6 6.4671 6.8547 -4.9701 16 7 5.5541 7.6085 -5.5425 17 14 7.8959 6.1927 -5.9749 18 1 8.7790 5.3776 -5.1026 19 1 7.3748 5.3473 -7.0791 20 1 8.6694 7.3263 -6.5422 21 6 5.2899 6.5585 -1.3690 22 6 4.0601 2.5267 -0.0005 23 8 5.4178 2.6043 0.0000 24 6 3.4340 1.2858 -0.0005 25 8 4.1779 0.1462 0.0000 26 6 4.5325 -0.3965 1.2735 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3632 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 0.2133 2.3189 -0.0006 31 1 1.3279 4.5118 0.0080 32 1 4.8426 5.0020 0.6599 33 1 3.2771 5.7902 0.3499 34 1 2.5607 6.3710 -1.6494 35 1 2.7485 4.8646 -2.5992 36 1 3.2297 7.3869 -3.6500 37 1 4.0571 5.9117 -4.2325 38 1 5.1377 8.9073 -3.7043 39 1 5.6220 7.8198 -6.4868 40 1 6.3132 6.2809 -1.1161 41 1 4.9147 7.3071 -0.6712 42 1 5.8102 2.6270 0.8836 43 1 3.6272 -0.6376 1.8305 44 1 5.1236 -1.3012 1.1310 45 1 5.1176 0.3355 1.8302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895108886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:54 Heat of formation + Delta-G solvation = -148.833548 kcal Electronic energy + Delta-G solvation = -28396.127393 eV Core-core repulsion = 24379.153142 eV Total energy + Delta-G solvation = -4016.974252 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.74965 -40.13419 -39.49437 -38.53361 -37.15963 -36.37616 -34.14036 -32.72898 -30.95516 -30.15699 -29.61745 -28.37653 -27.64472 -26.75179 -25.42607 -23.42963 -22.62139 -21.63200 -21.27569 -19.80000 -19.02219 -18.44979 -18.17310 -17.73354 -17.11447 -16.87113 -16.76024 -16.22081 -16.04444 -15.72852 -15.63614 -15.53889 -15.23996 -14.94295 -14.55594 -14.22403 -14.06089 -13.62219 -13.42361 -13.32911 -13.14769 -12.98573 -12.80073 -12.69910 -12.51587 -12.40807 -12.31839 -12.09963 -12.08526 -11.87553 -11.73379 -11.70114 -10.93892 -10.80570 -10.58578 -10.10876 -9.60948 -9.29320 -9.05815 -8.18127 -6.29528 0.10006 0.22528 1.38446 1.41533 1.53080 2.19494 2.38615 2.41761 2.77406 3.04498 3.29533 3.34715 3.80644 3.89072 4.00342 4.03990 4.19224 4.35038 4.36916 4.38863 4.40896 4.42245 4.43653 4.45684 4.50541 4.62961 4.66475 4.73997 4.76648 4.83320 4.85665 5.07710 5.10013 5.18930 5.28148 5.37915 5.47090 5.53780 5.68500 5.80111 6.03609 6.12664 6.21291 6.32570 6.53432 6.75076 6.92281 7.38347 7.46292 8.87854 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.016147 B = 0.003441 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.621652 B = 8134.619284 C = 8645.447590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.327 6.327 3 C 0.114 3.886 4 C -0.200 4.200 5 C -0.060 4.060 6 C -0.132 4.132 7 C 0.096 3.904 8 N -0.502 5.502 9 C 0.047 3.953 10 C -0.113 4.113 11 C 0.233 3.767 12 O -0.601 6.601 13 C -0.539 4.539 14 H 0.047 0.953 15 C 0.026 3.974 16 N -0.914 5.914 17 Si 0.954 3.046 18 H -0.275 1.275 19 H -0.281 1.281 20 H -0.276 1.276 21 C 0.065 3.935 22 C 0.141 3.859 23 O -0.487 6.487 24 C 0.009 3.991 25 O -0.343 6.343 26 C 0.031 3.969 27 H 0.063 0.937 28 H 0.118 0.882 29 H 0.073 0.927 30 H 0.165 0.835 31 H 0.152 0.848 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.043 0.957 37 H 0.040 0.960 38 H 0.376 0.624 39 H 0.267 0.733 40 H 0.066 0.934 41 H 0.039 0.961 42 H 0.400 0.600 43 H 0.049 0.951 44 H 0.107 0.893 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.733 -12.879 16.390 23.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.241 6.241 3 C 0.067 3.933 4 C -0.218 4.218 5 C -0.078 4.078 6 C -0.134 4.134 7 C -0.031 4.031 8 N -0.226 5.226 9 C -0.081 4.081 10 C -0.152 4.152 11 C 0.193 3.807 12 O -0.409 6.409 13 C -0.578 4.578 14 H 0.065 0.935 15 C -0.173 4.173 16 N -0.555 5.555 17 Si 0.780 3.220 18 H -0.200 1.200 19 H -0.207 1.207 20 H -0.201 1.201 21 C -0.063 4.063 22 C 0.095 3.905 23 O -0.299 6.299 24 C -0.036 4.036 25 O -0.260 6.260 26 C -0.063 4.063 27 H 0.082 0.918 28 H 0.137 0.863 29 H 0.091 0.909 30 H 0.182 0.818 31 H 0.170 0.830 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.226 0.774 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.258 0.742 43 H 0.067 0.933 44 H 0.125 0.875 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.340 -13.671 15.934 23.861 hybrid contribution 0.319 0.662 -0.589 0.942 sum -11.021 -13.009 15.344 22.938 Atomic orbital electron populations 1.23419 0.76172 1.05704 1.02588 1.86126 1.23614 1.25959 1.88380 1.19340 0.90858 0.85908 0.97168 1.21390 1.01459 0.90606 1.08387 1.21061 0.92771 0.98457 0.95559 1.19999 0.94042 0.94123 1.05215 1.20993 0.99128 0.92605 0.90421 1.65315 1.13871 1.33335 1.10107 1.23047 0.92532 0.97946 0.94589 1.22620 0.97347 0.98096 0.97099 1.19490 0.92059 0.77860 0.91272 1.86072 1.96886 1.22759 1.35168 1.21894 1.09872 1.31149 0.94845 0.93450 1.25626 0.98294 0.94967 0.98456 1.69776 1.35072 1.38221 1.12439 0.85575 0.79789 0.78198 0.78436 1.20010 1.20691 1.20120 1.22766 0.97215 0.90253 0.96059 1.18352 0.83762 0.90195 0.98198 1.84977 1.15217 1.95838 1.33860 1.18475 0.87613 0.86447 1.11069 1.86138 1.70576 1.38400 1.30864 1.23135 1.00058 0.99280 0.83795 0.91825 0.86345 0.90856 0.81801 0.83042 0.89669 0.92469 0.93078 0.91254 0.93794 0.94110 0.77424 0.92383 0.91514 0.94237 0.74208 0.93279 0.87512 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -7.53 10.28 -79.58 -0.82 -8.35 16 3 C 0.11 2.89 6.70 22.55 0.15 3.04 16 4 C -0.20 -4.12 9.04 22.37 0.20 -3.92 16 5 C -0.06 -1.35 9.58 22.26 0.21 -1.13 16 6 C -0.13 -3.67 5.08 -19.76 -0.10 -3.77 16 7 C 0.10 2.84 4.62 85.56 0.40 3.24 16 8 N -0.50 -19.75 5.32 -885.58 -4.72 -24.46 16 9 C 0.05 1.82 6.07 86.42 0.52 2.34 16 10 C -0.11 -5.46 5.55 31.49 0.17 -5.29 16 11 C 0.23 12.03 1.05 -10.65 -0.01 12.02 16 12 O -0.60 -32.12 12.94 -148.98 -1.93 -34.05 16 13 C -0.54 -30.77 8.10 25.60 0.21 -30.57 16 14 H 0.05 2.78 7.53 -2.91 -0.02 2.76 16 15 C 0.03 1.45 5.02 84.66 0.43 1.87 16 16 N -0.91 -50.93 10.82 21.45 0.23 -50.70 16 17 Si 0.95 45.04 29.54 68.60 2.03 47.07 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 21 C 0.06 2.86 5.74 86.45 0.50 3.36 16 22 C 0.14 4.23 6.69 22.55 0.15 4.38 16 23 O -0.49 -14.83 12.51 -79.54 -1.00 -15.82 16 24 C 0.01 0.26 5.75 22.63 0.13 0.39 16 25 O -0.34 -10.30 9.99 -70.41 -0.70 -11.01 16 26 C 0.03 0.62 11.13 113.37 1.26 1.88 16 27 H 0.06 0.72 7.66 -2.39 -0.02 0.70 16 28 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 30 H 0.16 2.23 6.29 -2.91 -0.02 2.21 16 31 H 0.15 2.69 8.03 -2.91 -0.02 2.66 16 32 H 0.08 2.35 7.79 -2.39 -0.02 2.33 16 33 H 0.06 1.49 7.63 -2.39 -0.02 1.47 16 34 H 0.05 1.74 7.75 -2.38 -0.02 1.72 16 35 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.04 2.11 7.98 -2.39 -0.02 2.10 16 37 H 0.04 2.21 7.23 -2.39 -0.02 2.19 16 38 H 0.38 20.55 7.33 -74.06 -0.54 20.00 16 39 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 40 H 0.07 3.04 7.67 -2.39 -0.02 3.02 16 41 H 0.04 1.63 7.94 -2.39 -0.02 1.61 16 42 H 0.40 7.73 9.06 -74.05 -0.67 7.06 16 43 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -72.14 369.23 -1.76 -73.90 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: -0.19 Total: 34.28 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 5.33 Total: -10.85 kcal Atomic # 7 Polarization: -70.68 SS G_CDS: -4.48 Total: -75.16 kcal Atomic # 8 Polarization: -64.78 SS G_CDS: -4.44 Total: -69.23 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -72.14 -1.76 -73.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895108886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.938 kcal (2) G-P(sol) polarization free energy of solvation -72.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds