Wall clock time and date at job start Tue Mar 31 2020 13:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46505 * 109.47221 * 2 1 4 4 C 1.46505 * 119.99573 * 263.22141 * 3 2 1 5 5 C 1.50695 * 109.46835 * 269.99544 * 4 3 2 6 6 H 1.08003 * 120.00378 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00022 * 180.02562 * 5 4 3 8 8 N 1.31521 * 120.00106 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00487 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.46939 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47333 * 119.99913 * 9 7 5 12 12 H 1.48502 * 109.47183 * 240.00281 * 9 7 5 13 13 C 1.34773 * 120.00133 * 83.21840 * 3 2 1 14 14 O 1.21644 * 120.00113 * 183.54913 * 13 3 2 15 15 C 1.47172 * 120.00069 * 3.54668 * 13 3 2 16 16 C 1.35046 * 122.47569 * 173.38175 * 15 13 3 17 17 S 1.76184 * 108.25454 * 179.74108 * 16 15 13 18 18 C 1.76047 * 90.17837 * 0.23680 * 17 16 15 19 19 N 1.38462 * 125.18910 * 179.97438 * 18 17 16 20 20 C 1.46853 * 111.00067 * 124.23749 * 19 18 17 21 21 C 1.53027 * 109.52390 * 174.15931 * 20 19 18 22 22 C 1.53119 * 109.27683 * 59.18432 * 21 20 19 23 23 C 1.53118 * 109.16039 * 302.33979 * 22 21 20 24 24 C 1.46844 * 110.99887 * 0.02909 * 19 18 17 25 25 N 1.29439 * 109.62513 * 0.02562 * 18 17 16 26 26 H 1.09004 * 109.47168 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47476 * 300.00087 * 1 2 3 28 28 H 1.08997 * 109.47398 * 60.00327 * 1 2 3 29 29 H 1.08995 * 109.47476 * 239.99913 * 2 1 3 30 30 H 1.08997 * 109.47398 * 119.99673 * 2 1 3 31 31 H 1.08998 * 109.47145 * 29.99860 * 4 3 2 32 32 H 1.09005 * 109.46329 * 149.99917 * 4 3 2 33 33 H 0.96998 * 120.00193 * 180.02562 * 8 7 5 34 34 H 1.07993 * 125.87305 * 359.97438 * 16 15 13 35 35 H 1.08999 * 109.46326 * 294.18066 * 20 19 18 36 36 H 1.09005 * 109.45964 * 54.14576 * 20 19 18 37 37 H 1.09000 * 109.50784 * 299.24062 * 21 20 19 38 38 H 1.09004 * 109.50510 * 179.11807 * 21 20 19 39 39 H 1.09004 * 109.52211 * 182.43932 * 22 21 20 40 40 H 1.08996 * 109.57875 * 62.28142 * 22 21 20 41 41 H 1.09001 * 109.50534 * 297.71786 * 23 22 21 42 42 H 1.08996 * 109.53506 * 177.61646 * 23 22 21 43 43 H 1.08994 * 109.46590 * 305.85144 * 24 19 18 44 44 H 1.09004 * 109.46051 * 65.83402 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4036 2.0219 -1.2600 5 6 3.8659 1.7713 -1.5241 6 1 4.4498 1.1924 -0.8238 7 6 4.4585 2.2810 -2.6599 8 7 3.7477 2.9865 -3.5125 9 14 6.2710 1.9699 -2.9879 10 1 6.8410 1.1555 -1.8845 11 1 6.4235 1.2402 -4.2722 12 1 6.9896 3.2671 -3.0671 13 6 2.1130 2.0625 1.1590 14 8 2.4567 3.2294 1.1523 15 6 1.8005 1.3948 2.4327 16 6 2.0025 1.9860 3.6300 17 16 1.4976 0.8644 4.8915 18 6 1.0590 -0.3229 3.6679 19 7 0.5372 -1.5792 3.9260 20 6 -0.7403 -1.7721 3.2278 21 6 -1.2135 -3.2151 3.4167 22 6 -1.3795 -3.5010 4.9118 23 6 -0.0477 -3.2461 5.6230 24 6 0.3919 -1.8021 5.3701 25 7 1.2996 0.1573 2.4902 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.8108 1.6066 -2.0749 32 1 2.2255 3.0951 -1.1911 33 1 4.1646 3.3448 -4.3117 34 1 2.4012 2.9772 3.7871 35 1 -1.4847 -1.0892 3.6371 36 1 -0.6074 -1.5697 2.1650 37 1 -0.4761 -3.8981 2.9952 38 1 -2.1694 -3.3537 2.9115 39 1 -1.6747 -4.5407 5.0532 40 1 -2.1452 -2.8453 5.3262 41 1 0.7082 -3.9296 5.2362 42 1 -0.1699 -3.4070 6.6941 43 1 1.3469 -1.6216 5.8634 44 1 -0.3580 -1.1192 5.7694 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896859667.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:44 Heat of formation + Delta-G solvation = 25.534697 kcal Electronic energy + Delta-G solvation = -25770.198682 eV Core-core repulsion = 22235.831227 eV Total energy + Delta-G solvation = -3534.367455 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.47780 -39.36862 -37.61060 -35.23677 -33.97131 -32.68249 -31.41587 -29.93577 -29.55358 -27.37648 -25.69476 -24.35319 -23.76797 -22.78851 -22.34691 -20.51310 -20.17105 -18.92203 -17.70030 -17.00574 -16.34946 -15.87642 -15.54372 -15.18545 -15.03322 -14.91372 -14.55665 -14.24335 -13.93597 -13.79965 -13.52196 -13.38944 -13.05531 -12.89861 -12.57312 -12.20595 -11.97936 -11.76847 -11.63053 -11.48115 -11.24332 -11.14978 -11.01567 -10.87422 -10.80883 -10.65317 -10.50594 -10.20945 -10.08642 -9.58847 -9.33444 -9.18985 -8.92781 -8.38731 -8.21472 -7.53276 -5.99452 -4.03918 0.65173 1.09285 1.57538 2.31457 2.99305 3.33608 3.40696 3.45816 3.94787 4.10222 4.25696 4.38346 4.48102 4.50115 4.62268 4.75331 4.86854 5.06171 5.10672 5.22692 5.32165 5.36148 5.38779 5.43192 5.50949 5.53745 5.70319 5.73379 5.76770 5.87482 5.95213 5.98943 6.06752 6.27617 6.42069 6.50231 6.57860 6.91928 7.15263 7.49839 7.57758 7.70314 7.97957 8.28566 8.48721 8.92927 9.10685 9.60897 11.08545 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018830 B = 0.003412 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.663160 B = 8204.198201 C = 8784.125540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.101 3.899 3 N -0.574 5.574 4 C 0.244 3.756 5 C -0.524 4.524 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.575 3.425 14 O -0.539 6.539 15 C 0.050 3.950 16 C -0.189 4.189 17 S 0.036 5.964 18 C 0.255 3.745 19 N -0.435 5.435 20 C 0.057 3.943 21 C -0.119 4.119 22 C -0.125 4.125 23 C -0.114 4.114 24 C 0.045 3.955 25 N -0.455 5.455 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.034 0.966 32 H 0.044 0.956 33 H 0.262 0.738 34 H 0.187 0.813 35 H 0.047 0.953 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.134 -13.734 19.887 27.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 N -0.303 5.303 4 C 0.125 3.875 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.358 3.642 14 O -0.417 6.417 15 C -0.081 4.081 16 C -0.330 4.330 17 S 0.285 5.715 18 C -0.117 4.117 19 N -0.156 5.156 20 C -0.070 4.070 21 C -0.157 4.157 22 C -0.163 4.163 23 C -0.152 4.152 24 C -0.083 4.083 25 N -0.175 5.175 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.120 0.880 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.205 0.795 35 H 0.065 0.935 36 H 0.119 0.881 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.767 -13.695 20.113 27.029 hybrid contribution 0.864 0.766 -0.725 1.363 sum -10.904 -12.930 19.388 25.728 Atomic orbital electron populations 1.22047 0.97140 1.00581 1.01047 1.21841 0.93485 0.83392 1.03533 1.48119 1.60748 1.13619 1.07824 1.19360 0.95282 0.94521 0.78313 1.21485 0.94833 1.33563 1.06427 0.92359 1.24933 0.98311 0.94950 0.95922 1.69949 1.36087 1.35395 1.11978 0.86439 0.84983 0.78015 0.77979 1.19789 1.20957 1.20895 1.17071 0.79160 0.85814 0.82131 1.90786 1.48881 1.15768 1.86255 1.20615 1.02096 0.89608 0.95804 1.26833 1.08551 1.04621 0.93032 1.84934 1.63843 1.09091 1.13631 1.26267 1.02139 0.92666 0.90634 1.58289 1.27207 1.18911 1.11172 1.22413 0.86479 0.97451 1.00611 1.21653 1.01850 0.95638 0.96538 1.21641 0.97107 1.01990 0.95543 1.21580 0.97976 0.94836 1.00790 1.22425 1.02335 0.98725 0.84812 1.67222 1.17832 1.11454 1.21019 0.92792 0.93124 0.93386 0.91181 0.87992 0.94753 0.93747 0.92812 0.79539 0.93459 0.88116 0.90428 0.90562 0.91209 0.91951 0.90417 0.90579 0.89448 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.08 37.15 0.34 -2.02 16 2 C 0.10 1.91 5.70 -4.04 -0.02 1.89 16 3 N -0.57 -13.29 2.47 -176.42 -0.44 -13.72 16 4 C 0.24 6.68 5.16 -5.19 -0.03 6.65 16 5 C -0.52 -15.40 9.39 -34.44 -0.32 -15.72 16 6 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 9 Si 0.90 22.40 29.54 -169.99 -5.02 17.38 16 10 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 13 C 0.58 13.21 7.58 -12.64 -0.10 13.11 16 14 O -0.54 -14.18 16.24 5.24 0.09 -14.10 16 15 C 0.05 0.92 6.34 -84.59 -0.54 0.38 16 16 C -0.19 -2.94 10.84 29.60 0.32 -2.61 16 17 S 0.04 0.42 21.49 -107.50 -2.31 -1.89 16 18 C 0.25 3.31 6.96 -88.03 -0.61 2.69 16 19 N -0.44 -4.50 4.72 -173.92 -0.82 -5.32 16 20 C 0.06 0.52 5.38 -3.84 -0.02 0.50 16 21 C -0.12 -0.79 6.09 -26.66 -0.16 -0.95 16 22 C -0.13 -0.68 6.00 -26.61 -0.16 -0.84 16 23 C -0.11 -0.65 6.09 -26.65 -0.16 -0.82 16 24 C 0.04 0.34 4.52 -3.83 -0.02 0.32 16 25 N -0.45 -7.21 4.74 -10.59 -0.05 -7.26 16 26 H 0.05 0.69 7.69 -51.93 -0.40 0.30 16 27 H 0.05 0.81 6.88 -51.93 -0.36 0.45 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.36 8.02 -51.93 -0.42 0.94 16 30 H 0.10 1.87 5.24 -51.93 -0.27 1.60 16 31 H 0.03 0.95 8.07 -51.93 -0.42 0.53 16 32 H 0.04 1.35 7.37 -51.93 -0.38 0.97 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.19 2.77 8.02 -52.49 -0.42 2.35 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 1.06 6.77 -51.93 -0.35 0.71 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.09 0.66 7.48 -51.93 -0.39 0.27 16 44 H 0.06 0.39 8.04 -51.93 -0.42 -0.03 16 LS Contribution 363.23 15.07 5.47 5.47 Total: -1.00 -33.53 363.23 -10.68 -44.21 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -6.75 Total: -2.65 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -1.58 Total: 4.26 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.57 Total: -52.68 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.09 Total: -14.10 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 16 Polarization: 0.42 SS G_CDS: -2.31 Total: -1.89 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.53 -10.68 -44.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896859667.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.741 kcal (2) G-P(sol) polarization free energy of solvation -33.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds