Wall clock time and date at job start Tue Mar 31 2020 13:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46505 * 109.47221 * 2 1 4 4 C 1.46505 * 119.99573 * 263.22141 * 3 2 1 5 5 C 1.50695 * 109.46835 * 269.99544 * 4 3 2 6 6 H 1.08003 * 120.00378 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00022 * 180.02562 * 5 4 3 8 8 N 1.31521 * 120.00106 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00487 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.46939 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47333 * 119.99913 * 9 7 5 12 12 H 1.48502 * 109.47183 * 240.00281 * 9 7 5 13 13 C 1.34773 * 120.00133 * 83.21840 * 3 2 1 14 14 O 1.21644 * 120.00113 * 183.54913 * 13 3 2 15 15 C 1.47172 * 120.00069 * 3.54668 * 13 3 2 16 16 C 1.35046 * 122.47569 * 173.38175 * 15 13 3 17 17 S 1.76184 * 108.25454 * 179.74108 * 16 15 13 18 18 C 1.76047 * 90.17837 * 0.23680 * 17 16 15 19 19 N 1.38462 * 125.18910 * 179.97438 * 18 17 16 20 20 C 1.46853 * 111.00067 * 124.23749 * 19 18 17 21 21 C 1.53027 * 109.52390 * 174.15931 * 20 19 18 22 22 C 1.53119 * 109.27683 * 59.18432 * 21 20 19 23 23 C 1.53118 * 109.16039 * 302.33979 * 22 21 20 24 24 C 1.46844 * 110.99887 * 0.02909 * 19 18 17 25 25 N 1.29439 * 109.62513 * 0.02562 * 18 17 16 26 26 H 1.09004 * 109.47168 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47476 * 300.00087 * 1 2 3 28 28 H 1.08997 * 109.47398 * 60.00327 * 1 2 3 29 29 H 1.08995 * 109.47476 * 239.99913 * 2 1 3 30 30 H 1.08997 * 109.47398 * 119.99673 * 2 1 3 31 31 H 1.08998 * 109.47145 * 29.99860 * 4 3 2 32 32 H 1.09005 * 109.46329 * 149.99917 * 4 3 2 33 33 H 0.96998 * 120.00193 * 180.02562 * 8 7 5 34 34 H 1.07993 * 125.87305 * 359.97438 * 16 15 13 35 35 H 1.08999 * 109.46326 * 294.18066 * 20 19 18 36 36 H 1.09005 * 109.45964 * 54.14576 * 20 19 18 37 37 H 1.09000 * 109.50784 * 299.24062 * 21 20 19 38 38 H 1.09004 * 109.50510 * 179.11807 * 21 20 19 39 39 H 1.09004 * 109.52211 * 182.43932 * 22 21 20 40 40 H 1.08996 * 109.57875 * 62.28142 * 22 21 20 41 41 H 1.09001 * 109.50534 * 297.71786 * 23 22 21 42 42 H 1.08996 * 109.53506 * 177.61646 * 23 22 21 43 43 H 1.08994 * 109.46590 * 305.85144 * 24 19 18 44 44 H 1.09004 * 109.46051 * 65.83402 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4036 2.0219 -1.2600 5 6 3.8659 1.7713 -1.5241 6 1 4.4498 1.1924 -0.8238 7 6 4.4585 2.2810 -2.6599 8 7 3.7477 2.9865 -3.5125 9 14 6.2710 1.9699 -2.9879 10 1 6.8410 1.1555 -1.8845 11 1 6.4235 1.2402 -4.2722 12 1 6.9896 3.2671 -3.0671 13 6 2.1130 2.0625 1.1590 14 8 2.4567 3.2294 1.1523 15 6 1.8005 1.3948 2.4327 16 6 2.0025 1.9860 3.6300 17 16 1.4976 0.8644 4.8915 18 6 1.0590 -0.3229 3.6679 19 7 0.5372 -1.5792 3.9260 20 6 -0.7403 -1.7721 3.2278 21 6 -1.2135 -3.2151 3.4167 22 6 -1.3795 -3.5010 4.9118 23 6 -0.0477 -3.2461 5.6230 24 6 0.3919 -1.8021 5.3701 25 7 1.2996 0.1573 2.4902 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.8108 1.6066 -2.0749 32 1 2.2255 3.0951 -1.1911 33 1 4.1646 3.3448 -4.3117 34 1 2.4012 2.9772 3.7871 35 1 -1.4847 -1.0892 3.6371 36 1 -0.6074 -1.5697 2.1650 37 1 -0.4761 -3.8981 2.9952 38 1 -2.1694 -3.3537 2.9115 39 1 -1.6747 -4.5407 5.0532 40 1 -2.1452 -2.8453 5.3262 41 1 0.7082 -3.9296 5.2362 42 1 -0.1699 -3.4070 6.6941 43 1 1.3469 -1.6216 5.8634 44 1 -0.3580 -1.1192 5.7694 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896859667.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:43 Heat of formation + Delta-G solvation = 5.109316 kcal Electronic energy + Delta-G solvation = -25771.084393 eV Core-core repulsion = 22235.831227 eV Total energy + Delta-G solvation = -3535.253166 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.69486 -40.48435 -38.93636 -37.06183 -34.93726 -34.61466 -32.02801 -31.61034 -30.72977 -29.29660 -26.85767 -25.71477 -24.47277 -24.34316 -23.80973 -21.70783 -20.86226 -20.08186 -19.16596 -18.61192 -18.09566 -17.39061 -16.80615 -16.57359 -16.15172 -16.03264 -15.83153 -15.45334 -14.98074 -14.76723 -14.74930 -14.47776 -14.33809 -14.06634 -14.01142 -13.62269 -13.27090 -13.23282 -13.12499 -12.92439 -12.66609 -12.54644 -12.21935 -12.17657 -12.01955 -11.76989 -11.71353 -11.50059 -11.39081 -11.20988 -10.95899 -10.66896 -10.32537 -10.19341 -9.49620 -9.14868 -8.24363 -6.39974 -0.50756 0.05327 0.41018 0.99701 1.35108 1.37410 1.50060 2.06288 2.24837 2.41776 2.48748 3.04382 3.34788 3.74696 3.87769 3.98684 4.03927 4.16128 4.24180 4.30027 4.31804 4.47586 4.54077 4.54882 4.59110 4.71988 4.79550 4.83774 4.89810 4.98175 5.01909 5.09579 5.15991 5.19144 5.25257 5.31074 5.40867 5.49729 5.57393 5.59838 5.74363 5.84122 6.02692 6.48259 6.67567 6.72701 7.20242 7.36247 8.83073 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018830 B = 0.003412 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.663160 B = 8204.198201 C = 8784.125540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.102 3.898 3 N -0.582 5.582 4 C 0.261 3.739 5 C -0.545 4.545 6 H 0.049 0.951 7 C 0.009 3.991 8 N -0.926 5.926 9 Si 0.971 3.029 10 H -0.270 1.270 11 H -0.266 1.266 12 H -0.278 1.278 13 C 0.567 3.433 14 O -0.589 6.589 15 C 0.028 3.972 16 C -0.201 4.201 17 S 0.129 5.871 18 C 0.253 3.747 19 N -0.439 5.439 20 C 0.055 3.945 21 C -0.115 4.115 22 C -0.123 4.123 23 C -0.110 4.110 24 C 0.037 3.963 25 N -0.478 5.478 26 H 0.088 0.912 27 H 0.049 0.951 28 H 0.033 0.967 29 H 0.059 0.941 30 H 0.114 0.886 31 H 0.024 0.976 32 H 0.002 0.998 33 H 0.269 0.731 34 H 0.186 0.814 35 H 0.053 0.947 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.554 -16.285 22.442 30.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.021 4.021 3 N -0.310 5.310 4 C 0.140 3.860 5 C -0.584 4.584 6 H 0.068 0.932 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.795 3.205 10 H -0.194 1.194 11 H -0.191 1.191 12 H -0.203 1.203 13 C 0.353 3.647 14 O -0.471 6.471 15 C -0.103 4.103 16 C -0.344 4.344 17 S 0.380 5.620 18 C -0.118 4.118 19 N -0.160 5.160 20 C -0.071 4.071 21 C -0.153 4.153 22 C -0.160 4.160 23 C -0.147 4.147 24 C -0.090 4.090 25 N -0.199 5.199 26 H 0.107 0.893 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.131 0.869 31 H 0.042 0.958 32 H 0.020 0.980 33 H 0.078 0.922 34 H 0.203 0.797 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.116 0.884 43 H 0.108 0.892 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.224 -16.308 22.704 30.510 hybrid contribution 0.917 1.487 -1.373 2.222 sum -11.308 -14.821 21.331 28.329 Atomic orbital electron populations 1.21906 0.94576 1.02550 1.00240 1.22052 0.95526 0.80992 1.03497 1.48142 1.61003 1.15104 1.06767 1.18828 0.94669 0.92300 0.80191 1.21681 0.95738 1.34144 1.06820 0.93235 1.25873 1.03386 0.94299 0.95423 1.70061 1.38258 1.35814 1.12443 0.85319 0.78635 0.78140 0.78408 1.19416 1.19113 1.20342 1.17734 0.77973 0.85446 0.83568 1.90728 1.51116 1.17930 1.87307 1.19870 1.05301 0.91182 0.93993 1.27064 1.07503 1.05574 0.94267 1.84571 1.61702 1.05730 1.09982 1.26612 1.01088 0.93490 0.90657 1.58383 1.27742 1.16799 1.13048 1.22476 0.85854 0.99240 0.99557 1.21652 1.02103 0.93641 0.97863 1.21648 0.97099 1.02993 0.94296 1.21594 0.97869 0.93110 1.02164 1.22651 1.02942 1.00474 0.82904 1.67024 1.19321 1.10632 1.22953 0.89333 0.93215 0.94793 0.92238 0.86895 0.95774 0.97997 0.92238 0.79677 0.92848 0.89825 0.91158 0.89321 0.89913 0.91246 0.91038 0.88448 0.89220 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 9.08 71.98 0.65 -3.62 16 2 C 0.10 3.95 5.70 86.38 0.49 4.45 16 3 N -0.58 -28.50 2.47 -830.33 -2.05 -30.56 16 4 C 0.26 15.24 5.16 85.63 0.44 15.68 16 5 C -0.55 -33.42 9.39 25.60 0.24 -33.18 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 7 C 0.01 0.56 5.46 84.65 0.46 1.02 16 8 N -0.93 -57.73 13.29 21.45 0.28 -57.44 16 9 Si 0.97 46.63 29.54 68.60 2.03 48.66 16 10 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 13 C 0.57 27.54 7.58 86.59 0.66 28.19 16 14 O -0.59 -33.20 16.24 -4.17 -0.07 -33.27 16 15 C 0.03 1.05 6.34 40.48 0.26 1.31 16 16 C -0.20 -6.21 10.84 67.08 0.73 -5.49 16 17 S 0.13 2.69 21.49 -56.49 -1.21 1.47 16 18 C 0.25 6.09 6.96 179.44 1.25 7.34 16 19 N -0.44 -7.97 4.72 -704.16 -3.32 -11.29 16 20 C 0.06 0.87 5.38 86.32 0.46 1.34 16 21 C -0.11 -1.20 6.09 30.64 0.19 -1.02 16 22 C -0.12 -0.88 6.00 30.67 0.18 -0.69 16 23 C -0.11 -0.85 6.09 30.65 0.19 -0.66 16 24 C 0.04 0.43 4.52 86.33 0.39 0.82 16 25 N -0.48 -14.93 4.74 -187.41 -0.89 -15.81 16 26 H 0.09 2.17 7.69 -2.38 -0.02 2.15 16 27 H 0.05 1.59 6.88 -2.39 -0.02 1.57 16 28 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 2.39 8.02 -2.39 -0.02 2.37 16 30 H 0.11 4.21 5.24 -2.39 -0.01 4.20 16 31 H 0.02 1.43 8.07 -2.39 -0.02 1.41 16 32 H 0.00 0.13 7.37 -2.38 -0.02 0.11 16 33 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 34 H 0.19 5.61 8.02 -2.91 -0.02 5.59 16 35 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.08 1.62 6.77 -2.38 -0.02 1.60 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 40 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.09 1.02 7.48 -2.39 -0.02 1.00 16 44 H 0.07 0.67 8.04 -2.39 -0.02 0.65 16 Total: -1.00 -77.00 363.23 2.35 -74.65 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 0.99 Total: 8.10 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: 6.59 Total: 15.48 kcal Atomic # 7 Polarization: -109.13 SS G_CDS: -5.98 Total: -115.10 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.07 Total: -33.27 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -1.21 Total: 1.47 kcal Total: -77.00 2.35 -74.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896859667.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.761 kcal (2) G-P(sol) polarization free energy of solvation -77.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds