Wall clock time and date at job start Tue Mar 31 2020 14:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00158 * 2 1 4 4 C 1.52997 * 109.47395 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.47070 * 64.99924 * 4 3 2 6 6 C 1.46500 * 120.00312 * 282.78263 * 5 4 3 7 7 C 1.50699 * 109.47368 * 270.00043 * 6 5 4 8 8 H 1.08004 * 119.99650 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00305 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99775 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00132 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46869 * 89.99898 * 11 9 7 13 13 H 1.48497 * 109.47165 * 209.99465 * 11 9 7 14 14 H 1.48495 * 109.47033 * 330.00213 * 11 9 7 15 15 C 1.34781 * 119.99889 * 102.78746 * 5 4 3 16 16 O 1.21587 * 120.00249 * 186.99376 * 15 5 4 17 17 C 1.47533 * 119.99743 * 6.99090 * 15 5 4 18 18 C 1.39708 * 120.19335 * 326.70181 * 17 15 5 19 19 C 1.37787 * 119.91142 * 179.97438 * 18 17 15 20 20 C 1.38553 * 120.29765 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.80318 * 180.02562 * 20 19 18 22 22 O 1.42893 * 109.47245 * 89.99624 * 21 20 19 23 23 C 1.38053 * 120.38984 * 359.73746 * 20 19 18 24 24 C 1.38714 * 120.08526 * 0.51406 * 23 20 19 25 25 O 1.35649 * 120.15230 * 179.76784 * 24 23 20 26 26 C 1.42904 * 116.99856 * 359.72182 * 25 24 23 27 27 H 1.08998 * 109.46854 * 299.99561 * 1 2 3 28 28 H 1.09000 * 109.47311 * 59.99874 * 1 2 3 29 29 H 1.09002 * 109.46727 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46696 * 59.99750 * 3 2 1 31 31 H 1.09004 * 109.47291 * 300.00632 * 3 2 1 32 32 H 1.09001 * 109.46840 * 305.00054 * 4 3 2 33 33 H 1.09000 * 109.47106 * 185.00830 * 4 3 2 34 34 H 1.08993 * 109.47001 * 30.00319 * 6 5 4 35 35 H 1.09004 * 109.47034 * 149.99929 * 6 5 4 36 36 H 0.96996 * 119.99733 * 179.97438 * 10 9 7 37 37 H 1.08005 * 120.04311 * 0.02562 * 18 17 15 38 38 H 1.07994 * 119.85120 * 180.02562 * 19 18 17 39 39 H 1.09002 * 109.46799 * 209.99850 * 21 20 19 40 40 H 1.09002 * 109.47048 * 329.99025 * 21 20 19 41 41 H 0.96707 * 113.99581 * 179.97438 * 22 21 20 42 42 H 1.07999 * 119.95963 * 180.26205 * 23 20 19 43 43 H 1.08999 * 109.46968 * 179.97438 * 26 25 24 44 44 H 1.09008 * 109.46879 * 60.00285 * 26 25 24 45 45 H 1.08998 * 109.47514 * 300.00012 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 3.8405 -0.8821 -1.4407 7 6 5.0895 -1.5708 -0.9544 8 1 5.9029 -0.9891 -0.5464 9 6 5.1944 -2.9434 -1.0312 10 7 4.2041 -3.6517 -1.5285 11 14 6.7424 -3.7971 -0.4276 12 1 6.5914 -4.1377 1.0099 13 1 6.9595 -5.0401 -1.2105 14 1 7.9068 -2.8923 -0.6022 15 6 4.5051 1.3247 -2.2316 16 8 4.7526 0.8338 -3.3161 17 6 4.7842 2.7527 -1.9872 18 6 3.9600 3.4943 -1.1373 19 6 4.2264 4.8274 -0.9128 20 6 5.3085 5.4370 -1.5268 21 6 5.5898 6.8956 -1.2729 22 8 6.4598 7.0239 -0.1466 23 6 6.1339 4.7147 -2.3652 24 6 5.8775 3.3731 -2.6067 25 8 6.6850 2.6632 -3.4339 26 6 7.7799 3.3626 -4.0290 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8465 -0.8899 32 1 3.8514 0.5682 0.8409 33 1 3.9785 2.1765 0.0891 34 1 2.9823 -1.2435 -0.8743 35 1 3.6947 -1.0988 -2.4990 36 1 4.2781 -4.6173 -1.5829 37 1 3.1156 3.0230 -0.6562 38 1 3.5888 5.3996 -0.2552 39 1 6.0657 7.3321 -2.1511 40 1 4.6539 7.4163 -1.0704 41 1 6.6843 7.9381 0.0749 42 1 6.9779 5.1959 -2.8369 43 1 8.3438 2.6805 -4.6653 44 1 8.4314 3.7511 -3.2462 45 1 7.3999 4.1894 -4.6291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900559610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:43 Heat of formation + Delta-G solvation = -103.676485 kcal Electronic energy + Delta-G solvation = -28385.562129 eV Core-core repulsion = 24370.546035 eV Total energy + Delta-G solvation = -4015.016094 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.58347 -38.75077 -37.91864 -37.35194 -36.40586 -34.75464 -32.81180 -31.70895 -30.33087 -29.41660 -27.55001 -27.46805 -26.09505 -25.74735 -22.96543 -22.74212 -22.19797 -21.43711 -19.16128 -17.76791 -17.44344 -16.96859 -16.55760 -16.33122 -16.04238 -15.63568 -15.45450 -14.93371 -14.87980 -14.64475 -14.59220 -14.30454 -14.12823 -13.70706 -13.30957 -13.06070 -12.84738 -12.44019 -12.22205 -11.89597 -11.82540 -11.75359 -11.61584 -11.28738 -11.18427 -11.08606 -10.91408 -10.78058 -10.56951 -10.38264 -10.25198 -10.00916 -9.47458 -9.33138 -8.95112 -8.69589 -8.24638 -8.14471 -7.46550 -5.87044 -3.90014 0.95291 1.40976 3.26266 3.37861 3.40293 3.45840 3.51112 3.83590 4.10651 4.12762 4.21303 4.58062 4.62573 4.72186 4.87785 4.99483 5.04679 5.10580 5.19066 5.21828 5.33356 5.39471 5.46134 5.47711 5.51459 5.54694 5.55673 5.61682 5.66501 5.71930 5.82479 5.96074 6.16666 6.24166 6.35323 6.42204 6.67990 7.29191 7.37298 7.49389 7.53565 7.68920 7.77462 8.12475 8.44287 8.59300 9.07153 9.24498 9.72918 11.21012 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.011002 B = 0.004429 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.403335 B = 6320.478060 C = 7880.465961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.041 3.959 4 C 0.080 3.920 5 N -0.583 5.583 6 C 0.245 3.755 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.061 3.939 10 N -0.894 5.894 11 Si 0.894 3.106 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.549 3.451 16 O -0.522 6.522 17 C -0.145 4.145 18 C -0.080 4.080 19 C -0.148 4.148 20 C -0.045 4.045 21 C 0.117 3.883 22 O -0.565 6.565 23 C -0.198 4.198 24 C 0.176 3.824 25 O -0.282 6.282 26 C 0.024 3.976 27 H 0.034 0.966 28 H 0.036 0.964 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.058 0.942 35 H 0.040 0.960 36 H 0.261 0.739 37 H 0.154 0.846 38 H 0.128 0.872 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.379 0.621 42 H 0.131 0.869 43 H 0.102 0.898 44 H 0.053 0.947 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.634 23.082 2.407 23.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C -0.037 4.037 4 C -0.045 4.045 5 N -0.314 5.314 6 C 0.127 3.873 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.140 4.140 10 N -0.534 5.534 11 Si 0.722 3.278 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.335 3.665 16 O -0.399 6.399 17 C -0.149 4.149 18 C -0.098 4.098 19 C -0.166 4.166 20 C -0.046 4.046 21 C 0.040 3.960 22 O -0.370 6.370 23 C -0.217 4.217 24 C 0.128 3.872 25 O -0.193 6.193 26 C -0.071 4.071 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.125 0.875 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.171 0.829 38 H 0.146 0.854 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.226 0.774 42 H 0.149 0.851 43 H 0.120 0.880 44 H 0.072 0.928 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.495 21.540 1.695 21.658 hybrid contribution 0.835 0.572 0.378 1.080 sum -0.661 22.112 2.073 22.218 Atomic orbital electron populations 1.22720 0.82188 1.02705 0.99012 1.88181 1.18632 1.26269 1.95065 1.23091 0.95141 0.85998 0.99483 1.22290 0.91628 1.00683 0.89859 1.48054 1.59298 1.10534 1.13535 1.19440 0.97529 0.71647 0.98712 1.21487 1.02017 0.91736 1.40876 0.92743 1.24887 0.96406 0.97247 0.95478 1.69952 1.31422 1.06277 1.45701 0.86560 0.83702 0.79009 0.78506 1.20749 1.21216 1.20029 1.17872 0.78960 0.84641 0.85008 1.90765 1.51839 1.73512 1.23752 1.19766 0.97141 0.96156 1.01848 1.21863 0.99333 0.93643 0.94986 1.20828 0.99074 0.94665 1.02068 1.19434 0.94704 0.94604 0.95822 1.20998 0.93517 0.92711 0.88805 1.86607 1.68724 1.32151 1.49549 1.21020 1.02601 0.93218 1.04855 1.18957 0.89738 0.89474 0.89063 1.86377 1.38422 1.37200 1.57285 1.23123 0.88048 0.98335 0.97633 0.94748 0.94581 0.89673 0.92860 0.93454 0.89511 0.87482 0.92458 0.94224 0.92983 0.82893 0.85448 0.92783 0.92420 0.77395 0.85081 0.87992 0.92794 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.36 -6.64 8.47 -35.23 -0.30 -6.94 16 3 C 0.04 0.62 5.20 37.16 0.19 0.81 16 4 C 0.08 1.41 5.39 -4.05 -0.02 1.38 16 5 N -0.58 -13.48 2.48 -176.30 -0.44 -13.92 16 6 C 0.25 6.87 5.06 -5.19 -0.03 6.84 16 7 C -0.52 -15.71 9.39 -34.44 -0.32 -16.03 16 8 H 0.05 1.64 7.81 -52.48 -0.41 1.23 16 9 C 0.06 1.84 5.46 -17.82 -0.10 1.74 16 10 N -0.89 -27.78 13.29 55.43 0.74 -27.04 16 11 Si 0.89 22.91 29.54 -169.99 -5.02 17.89 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 15 C 0.55 12.88 7.29 -12.47 -0.09 12.79 16 16 O -0.52 -14.47 15.42 -13.05 -0.20 -14.67 16 17 C -0.15 -2.69 5.54 -104.85 -0.58 -3.27 16 18 C -0.08 -1.15 7.43 -39.20 -0.29 -1.44 16 19 C -0.15 -1.76 9.67 -39.63 -0.38 -2.15 16 20 C -0.05 -0.54 5.51 -104.57 -0.58 -1.12 16 21 C 0.12 0.98 7.16 36.01 0.26 1.24 16 22 O -0.56 -5.11 13.64 -35.23 -0.48 -5.59 16 23 C -0.20 -2.66 8.67 -39.47 -0.34 -3.00 16 24 C 0.18 3.04 6.67 -38.69 -0.26 2.79 16 25 O -0.28 -5.23 9.08 -36.98 -0.34 -5.57 16 26 C 0.02 0.29 9.81 101.05 0.99 1.28 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.68 7.36 -51.93 -0.38 0.30 16 32 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 33 H 0.11 1.61 3.82 -52.32 -0.20 1.41 16 34 H 0.06 1.64 6.01 -51.93 -0.31 1.33 16 35 H 0.04 1.26 7.34 -51.93 -0.38 0.87 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.15 1.95 3.29 -52.48 -0.17 1.78 16 38 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 39 H 0.05 0.36 8.08 -51.93 -0.42 -0.06 16 40 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 41 H 0.38 1.42 9.12 45.56 0.42 1.84 16 42 H 0.13 1.42 6.30 -52.49 -0.33 1.09 16 43 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.05 0.56 7.65 -51.92 -0.40 0.17 16 45 H 0.05 0.53 7.67 -51.93 -0.40 0.13 16 LS Contribution 370.26 15.07 5.58 5.58 Total: -1.00 -39.71 370.26 -6.40 -46.10 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.50 Total: 0.76 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -0.44 Total: 3.39 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.30 Total: -40.96 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -1.32 Total: -32.77 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -39.71 -6.40 -46.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900559610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.573 kcal (2) G-P(sol) polarization free energy of solvation -39.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds