Wall clock time and date at job start Tue Mar 31 2020 14:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00158 * 2 1 4 4 C 1.52997 * 109.47395 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.47070 * 64.99924 * 4 3 2 6 6 C 1.46500 * 120.00312 * 282.78263 * 5 4 3 7 7 C 1.50699 * 109.47368 * 270.00043 * 6 5 4 8 8 H 1.08004 * 119.99650 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00305 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99775 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00132 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46869 * 89.99898 * 11 9 7 13 13 H 1.48497 * 109.47165 * 209.99465 * 11 9 7 14 14 H 1.48495 * 109.47033 * 330.00213 * 11 9 7 15 15 C 1.34781 * 119.99889 * 102.78746 * 5 4 3 16 16 O 1.21587 * 120.00249 * 186.99376 * 15 5 4 17 17 C 1.47533 * 119.99743 * 6.99090 * 15 5 4 18 18 C 1.39708 * 120.19335 * 326.70181 * 17 15 5 19 19 C 1.37787 * 119.91142 * 179.97438 * 18 17 15 20 20 C 1.38553 * 120.29765 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.80318 * 180.02562 * 20 19 18 22 22 O 1.42893 * 109.47245 * 89.99624 * 21 20 19 23 23 C 1.38053 * 120.38984 * 359.73746 * 20 19 18 24 24 C 1.38714 * 120.08526 * 0.51406 * 23 20 19 25 25 O 1.35649 * 120.15230 * 179.76784 * 24 23 20 26 26 C 1.42904 * 116.99856 * 359.72182 * 25 24 23 27 27 H 1.08998 * 109.46854 * 299.99561 * 1 2 3 28 28 H 1.09000 * 109.47311 * 59.99874 * 1 2 3 29 29 H 1.09002 * 109.46727 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46696 * 59.99750 * 3 2 1 31 31 H 1.09004 * 109.47291 * 300.00632 * 3 2 1 32 32 H 1.09001 * 109.46840 * 305.00054 * 4 3 2 33 33 H 1.09000 * 109.47106 * 185.00830 * 4 3 2 34 34 H 1.08993 * 109.47001 * 30.00319 * 6 5 4 35 35 H 1.09004 * 109.47034 * 149.99929 * 6 5 4 36 36 H 0.96996 * 119.99733 * 179.97438 * 10 9 7 37 37 H 1.08005 * 120.04311 * 0.02562 * 18 17 15 38 38 H 1.07994 * 119.85120 * 180.02562 * 19 18 17 39 39 H 1.09002 * 109.46799 * 209.99850 * 21 20 19 40 40 H 1.09002 * 109.47048 * 329.99025 * 21 20 19 41 41 H 0.96707 * 113.99581 * 179.97438 * 22 21 20 42 42 H 1.07999 * 119.95963 * 180.26205 * 23 20 19 43 43 H 1.08999 * 109.46968 * 179.97438 * 26 25 24 44 44 H 1.09008 * 109.46879 * 60.00285 * 26 25 24 45 45 H 1.08998 * 109.47514 * 300.00012 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 3.8405 -0.8821 -1.4407 7 6 5.0895 -1.5708 -0.9544 8 1 5.9029 -0.9891 -0.5464 9 6 5.1944 -2.9434 -1.0312 10 7 4.2041 -3.6517 -1.5285 11 14 6.7424 -3.7971 -0.4276 12 1 6.5914 -4.1377 1.0099 13 1 6.9595 -5.0401 -1.2105 14 1 7.9068 -2.8923 -0.6022 15 6 4.5051 1.3247 -2.2316 16 8 4.7526 0.8338 -3.3161 17 6 4.7842 2.7527 -1.9872 18 6 3.9600 3.4943 -1.1373 19 6 4.2264 4.8274 -0.9128 20 6 5.3085 5.4370 -1.5268 21 6 5.5898 6.8956 -1.2729 22 8 6.4598 7.0239 -0.1466 23 6 6.1339 4.7147 -2.3652 24 6 5.8775 3.3731 -2.6067 25 8 6.6850 2.6632 -3.4339 26 6 7.7799 3.3626 -4.0290 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8465 -0.8899 32 1 3.8514 0.5682 0.8409 33 1 3.9785 2.1765 0.0891 34 1 2.9823 -1.2435 -0.8743 35 1 3.6947 -1.0988 -2.4990 36 1 4.2781 -4.6173 -1.5829 37 1 3.1156 3.0230 -0.6562 38 1 3.5888 5.3996 -0.2552 39 1 6.0657 7.3321 -2.1511 40 1 4.6539 7.4163 -1.0704 41 1 6.6843 7.9381 0.0749 42 1 6.9779 5.1959 -2.8369 43 1 8.3438 2.6805 -4.6653 44 1 8.4314 3.7511 -3.2462 45 1 7.3999 4.1894 -4.6291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900559610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:42 Heat of formation + Delta-G solvation = -135.021884 kcal Electronic energy + Delta-G solvation = -28386.921368 eV Core-core repulsion = 24370.546035 eV Total energy + Delta-G solvation = -4016.375333 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.86016 -40.22570 -38.92886 -38.71200 -37.26331 -36.50145 -34.89142 -33.03152 -31.57403 -30.78828 -29.28045 -28.47565 -27.25136 -27.10114 -24.86150 -24.05830 -23.33352 -22.65779 -20.72279 -18.74691 -18.57557 -18.40177 -18.20815 -17.80622 -17.24788 -16.92648 -16.78364 -16.65266 -16.14590 -16.03509 -15.75212 -15.44714 -15.30462 -15.22300 -14.57425 -14.31103 -14.17122 -13.98877 -13.53863 -13.37054 -13.13417 -13.06151 -12.96992 -12.74969 -12.69662 -12.55044 -12.38364 -12.17929 -12.11948 -11.99891 -11.72108 -11.63632 -10.90906 -10.64796 -10.62237 -10.48477 -9.95428 -9.46721 -9.20115 -8.18500 -6.33029 -0.18494 0.34522 1.33360 1.37462 1.47774 1.86865 2.26005 2.32683 2.43281 2.69770 2.92701 3.10654 3.40957 3.66002 3.72450 4.00446 4.09065 4.10298 4.22112 4.23623 4.29652 4.32156 4.33729 4.42694 4.46679 4.53925 4.54605 4.56776 4.62190 4.65390 4.81520 4.88603 4.93699 5.06575 5.20705 5.29359 5.35396 5.44608 5.58181 5.70216 5.90088 6.12359 6.35070 6.40429 6.74687 6.80473 6.98913 7.29245 7.47475 8.88672 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.011002 B = 0.004429 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.403335 B = 6320.478060 C = 7880.465961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.412 6.412 3 C 0.043 3.957 4 C 0.074 3.926 5 N -0.590 5.590 6 C 0.267 3.733 7 C -0.545 4.545 8 H 0.045 0.955 9 C 0.008 3.992 10 N -0.926 5.926 11 Si 0.968 3.032 12 H -0.261 1.261 13 H -0.277 1.277 14 H -0.276 1.276 15 C 0.540 3.460 16 O -0.586 6.586 17 C -0.185 4.185 18 C -0.077 4.077 19 C -0.136 4.136 20 C -0.039 4.039 21 C 0.118 3.882 22 O -0.588 6.588 23 C -0.194 4.194 24 C 0.153 3.847 25 O -0.332 6.332 26 C 0.016 3.984 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.140 0.860 34 H 0.048 0.952 35 H -0.014 1.014 36 H 0.266 0.734 37 H 0.167 0.833 38 H 0.170 0.830 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.402 0.598 42 H 0.157 0.843 43 H 0.105 0.895 44 H 0.071 0.929 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.320 26.911 4.670 27.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.332 6.332 3 C -0.034 4.034 4 C -0.048 4.048 5 N -0.320 5.320 6 C 0.146 3.854 7 C -0.583 4.583 8 H 0.063 0.937 9 C -0.191 4.191 10 N -0.566 5.566 11 Si 0.792 3.208 12 H -0.186 1.186 13 H -0.202 1.202 14 H -0.201 1.201 15 C 0.330 3.670 16 O -0.468 6.468 17 C -0.189 4.189 18 C -0.095 4.095 19 C -0.154 4.154 20 C -0.039 4.039 21 C 0.041 3.959 22 O -0.398 6.398 23 C -0.213 4.213 24 C 0.106 3.894 25 O -0.245 6.245 26 C -0.078 4.078 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.122 0.878 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.157 0.843 34 H 0.066 0.934 35 H 0.004 0.996 36 H 0.075 0.925 37 H 0.184 0.816 38 H 0.188 0.812 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.253 0.747 42 H 0.174 0.826 43 H 0.123 0.877 44 H 0.090 0.910 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.201 25.432 4.007 25.774 hybrid contribution 0.725 -0.478 -0.338 0.932 sum -0.476 24.953 3.669 25.226 Atomic orbital electron populations 1.22875 0.80027 1.03059 1.00958 1.88099 1.21205 1.28384 1.95491 1.23165 0.92741 0.85411 1.02113 1.22680 0.94122 1.01424 0.86610 1.48013 1.59539 1.08783 1.15624 1.18804 0.96601 0.75129 0.94875 1.21721 1.02494 0.92552 1.41564 0.93677 1.25845 1.00063 0.97875 0.95285 1.70079 1.33518 1.06808 1.46203 0.85424 0.78828 0.77647 0.78927 1.18595 1.20203 1.20122 1.18738 0.77424 0.86915 0.83952 1.90695 1.54401 1.75457 1.26234 1.19540 1.00181 0.93353 1.05842 1.21969 0.98781 0.94712 0.94009 1.21296 0.99148 0.93474 1.01482 1.20051 0.93487 0.96666 0.93709 1.21078 0.95223 0.89921 0.89675 1.86529 1.68941 1.34647 1.49648 1.21308 1.03567 0.91455 1.04937 1.19276 0.89739 0.91012 0.89408 1.86306 1.40128 1.39867 1.58151 1.23408 0.87082 0.98975 0.98383 0.91439 0.93808 0.90317 0.87824 0.92786 0.91008 0.84340 0.93427 0.99629 0.92488 0.81649 0.81228 0.90832 0.89536 0.74670 0.82566 0.87669 0.91004 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.96 16 2 O -0.41 -15.29 8.47 -148.98 -1.26 -16.55 16 3 C 0.04 1.24 5.20 71.98 0.37 1.62 16 4 C 0.07 2.64 5.39 86.38 0.47 3.10 16 5 N -0.59 -29.03 2.48 -829.95 -2.06 -31.09 16 6 C 0.27 16.14 5.06 85.63 0.43 16.57 16 7 C -0.54 -34.66 9.39 25.60 0.24 -34.42 16 8 H 0.04 2.87 7.81 -2.91 -0.02 2.85 16 9 C 0.01 0.50 5.46 84.65 0.46 0.96 16 10 N -0.93 -59.93 13.29 21.45 0.28 -59.64 16 11 Si 0.97 48.27 29.54 68.60 2.03 50.30 16 12 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 13 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 14 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16 15 C 0.54 27.20 7.29 86.69 0.63 27.83 16 16 O -0.59 -35.65 15.42 13.54 0.21 -35.45 16 17 C -0.19 -7.05 5.54 -20.01 -0.11 -7.16 16 18 C -0.08 -2.06 7.43 22.52 0.17 -1.89 16 19 C -0.14 -2.66 9.67 22.24 0.22 -2.45 16 20 C -0.04 -0.76 5.51 -19.83 -0.11 -0.87 16 21 C 0.12 1.32 7.16 71.24 0.51 1.83 16 22 O -0.59 -7.74 13.64 -148.98 -2.03 -9.78 16 23 C -0.19 -4.77 8.67 22.34 0.19 -4.58 16 24 C 0.15 5.38 6.67 22.85 0.15 5.53 16 25 O -0.33 -12.97 9.08 -72.11 -0.65 -13.62 16 26 C 0.02 0.38 9.81 113.37 1.11 1.49 16 27 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.05 1.49 7.36 -2.38 -0.02 1.47 16 32 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.14 4.03 3.82 -2.75 -0.01 4.02 16 34 H 0.05 2.94 6.01 -2.39 -0.01 2.92 16 35 H -0.01 -1.01 7.34 -2.39 -0.02 -1.03 16 36 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 37 H 0.17 3.86 3.29 -2.91 -0.01 3.85 16 38 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 39 H 0.07 0.57 8.08 -2.39 -0.02 0.55 16 40 H 0.09 0.53 8.08 -2.39 -0.02 0.51 16 41 H 0.40 1.07 9.12 -74.05 -0.68 0.39 16 42 H 0.16 2.90 6.30 -2.91 -0.02 2.89 16 43 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.07 1.44 7.65 -2.38 -0.02 1.42 16 45 H 0.08 1.45 7.67 -2.39 -0.02 1.44 16 Total: -1.00 -96.22 370.26 2.85 -93.38 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.35 Total: 12.93 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 5.99 Total: 9.52 kcal Atomic # 7 Polarization: -88.95 SS G_CDS: -1.77 Total: -90.73 kcal Atomic # 8 Polarization: -71.66 SS G_CDS: -3.74 Total: -75.40 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.03 Total: 50.30 kcal Total: -96.22 2.85 -93.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900559610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.646 kcal (2) G-P(sol) polarization free energy of solvation -96.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds