Wall clock time and date at job start Tue Mar 31 2020 14:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39868 * 125.89798 * 2 1 4 4 C 1.35326 * 107.92035 * 179.71199 * 3 2 1 5 5 C 1.50694 * 126.13024 * 180.26371 * 4 3 2 6 6 N 1.34944 * 107.74189 * 0.42258 * 4 3 2 7 7 C 1.46499 * 126.03803 * 179.84075 * 6 4 3 8 8 H 1.09006 * 109.46719 * 359.71558 * 7 6 4 9 9 C 1.52996 * 109.47482 * 239.71683 * 7 6 4 10 10 C 1.52999 * 109.47630 * 119.71043 * 7 6 4 11 11 C 1.50696 * 109.47581 * 184.99936 * 10 7 6 12 12 O 1.20833 * 119.99595 * 0.02562 * 11 10 7 13 13 O 1.34224 * 120.00302 * 180.02562 * 11 10 7 14 14 C 1.45206 * 117.00077 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.47021 * 180.02562 * 14 13 11 16 16 O 1.21282 * 120.00041 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00037 * 180.02562 * 15 14 13 18 18 C 1.46500 * 120.00169 * 180.02562 * 17 15 14 19 19 C 1.50696 * 109.47324 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99822 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00339 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99769 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00300 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46819 * 59.99744 * 23 21 19 25 25 H 1.48494 * 109.47285 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47086 * 300.00040 * 23 21 19 27 27 N 1.30834 * 125.89951 * 179.97438 * 2 1 3 28 28 H 1.08992 * 109.47585 * 270.00225 * 1 2 3 29 29 H 1.08998 * 109.46889 * 30.00430 * 1 2 3 30 30 H 1.09005 * 109.46894 * 150.00072 * 1 2 3 31 31 H 1.07998 * 126.04310 * 359.97376 * 3 2 1 32 32 H 1.08998 * 109.47096 * 270.19035 * 5 4 3 33 33 H 1.09009 * 109.46745 * 30.18587 * 5 4 3 34 34 H 1.09000 * 109.47178 * 150.18483 * 5 4 3 35 35 H 1.09001 * 109.47371 * 300.00018 * 9 7 6 36 36 H 1.09008 * 109.46947 * 59.99360 * 9 7 6 37 37 H 1.08995 * 109.47545 * 179.97438 * 9 7 6 38 38 H 1.09009 * 109.46302 * 65.00341 * 10 7 6 39 39 H 1.08995 * 109.47159 * 305.00670 * 10 7 6 40 40 H 1.09000 * 109.47070 * 300.00162 * 14 13 11 41 41 H 1.09001 * 109.46626 * 60.00180 * 14 13 11 42 42 H 0.96996 * 119.99844 * 359.97438 * 17 15 14 43 43 H 1.09004 * 109.46923 * 300.00119 * 18 17 15 44 44 H 1.09004 * 109.47042 * 59.99705 * 18 17 15 45 45 H 0.97000 * 120.00540 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6143 0.7154 0.0065 5 6 4.8350 1.5988 0.0144 6 7 3.6087 -0.6341 0.0009 7 6 4.7898 -1.5008 0.0016 8 1 5.6908 -0.8871 0.0022 9 6 4.7752 -2.3839 -1.2476 10 6 4.7737 -2.3841 1.2508 11 6 6.0474 -3.1869 1.3150 12 8 6.8827 -3.0647 0.4505 13 8 6.2540 -4.0376 2.3324 14 6 7.5034 -4.7774 2.3298 15 6 7.5579 -5.6756 3.5386 16 8 6.6348 -5.6905 4.3252 17 7 8.6328 -6.4617 3.7462 18 6 8.6856 -7.3353 4.9211 19 6 9.9823 -8.1031 4.9184 20 1 10.6956 -7.9554 4.1211 21 6 10.2576 -8.9948 5.9333 22 7 9.3887 -9.1751 6.9039 23 14 11.8647 -9.9470 5.9296 24 1 13.0040 -8.9953 5.9694 25 1 11.9182 -10.8324 7.1205 26 1 11.9498 -10.7697 4.6963 27 7 2.2741 -1.0598 0.0005 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.9923 2.1598 -0.0004 32 1 5.1330 1.8161 -1.0113 33 1 4.6057 2.5308 0.5313 34 1 5.6493 1.0888 0.5291 35 1 3.8743 -2.9975 -1.2483 36 1 4.7867 -1.7546 -2.1376 37 1 5.6542 -3.0284 -1.2474 38 1 3.9198 -3.0603 1.2065 39 1 4.6946 -1.7566 2.1385 40 1 7.5657 -5.3822 1.4251 41 1 8.3395 -4.0786 2.3580 42 1 9.3712 -6.4496 3.1174 43 1 8.6223 -6.7312 5.8262 44 1 7.8497 -8.0345 4.8918 45 1 9.5825 -9.8021 7.6182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919313467.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:25 Heat of formation + Delta-G solvation = -59.163918 kcal Electronic energy + Delta-G solvation = -26184.421267 eV Core-core repulsion = 22203.628133 eV Total energy + Delta-G solvation = -3980.793134 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.69257 -40.76971 -38.84400 -36.93902 -35.66559 -34.29368 -33.16479 -32.44805 -31.36610 -29.80728 -28.44346 -27.91432 -27.27444 -26.58059 -23.23421 -22.49364 -21.01723 -20.76867 -19.99805 -19.15328 -18.08504 -17.55888 -16.98378 -16.73935 -16.21676 -15.65421 -15.41706 -15.31184 -15.03158 -14.60797 -14.24033 -14.13576 -13.81111 -13.73573 -13.60332 -13.38531 -13.13234 -12.99441 -12.76860 -12.56288 -12.51503 -12.30605 -12.09936 -12.02120 -11.80119 -11.73696 -11.60195 -11.06158 -10.93833 -10.80586 -10.73258 -10.67712 -10.37330 -9.48750 -9.34698 -9.23430 -8.80950 -8.77274 -8.03214 -6.21995 -4.29863 1.54516 1.89675 1.94575 2.49131 2.51267 3.11946 3.22272 3.27312 3.28689 3.87048 3.99157 4.21917 4.26833 4.30831 4.48332 4.60952 4.67200 4.72114 5.01807 5.05038 5.06483 5.09238 5.13703 5.16529 5.20026 5.28003 5.31257 5.33698 5.38291 5.41860 5.48884 5.60768 5.64823 5.82833 5.94642 6.21568 6.45035 6.74158 7.18494 7.25605 7.42257 7.46872 7.50053 7.58448 7.88999 8.45284 8.67274 8.91766 9.36558 10.88039 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.030970 B = 0.001799 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.871683 B =15557.952195 C =15940.780097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.072 3.928 3 C -0.274 4.274 4 C 0.086 3.914 5 C -0.096 4.096 6 N -0.366 5.366 7 C 0.175 3.825 8 H 0.112 0.888 9 C -0.167 4.167 10 C -0.124 4.124 11 C 0.470 3.530 12 O -0.510 6.510 13 O -0.325 6.325 14 C 0.049 3.951 15 C 0.499 3.501 16 O -0.534 6.534 17 N -0.706 5.706 18 C 0.251 3.749 19 C -0.547 4.547 20 H 0.064 0.936 21 C 0.064 3.936 22 N -0.884 5.884 23 Si 0.906 3.094 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 N -0.291 5.291 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.145 0.855 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.093 0.907 38 H 0.122 0.878 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.393 0.607 43 H 0.030 0.970 44 H 0.030 0.970 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.338 21.817 -17.094 29.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.095 4.095 3 C -0.303 4.303 4 C -0.041 4.041 5 C -0.154 4.154 6 N -0.149 5.149 7 C 0.073 3.927 8 H 0.130 0.870 9 C -0.224 4.224 10 C -0.163 4.163 11 C 0.313 3.687 12 O -0.399 6.399 13 O -0.239 6.239 14 C -0.029 4.029 15 C 0.281 3.719 16 O -0.411 6.411 17 N -0.356 5.356 18 C 0.131 3.869 19 C -0.585 4.585 20 H 0.082 0.918 21 C -0.140 4.140 22 N -0.521 5.521 23 Si 0.733 3.267 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.200 1.200 27 N -0.113 5.113 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.163 0.837 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.140 0.860 39 H 0.131 0.869 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.226 0.774 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.602 20.318 -16.554 28.661 hybrid contribution 1.386 0.288 -0.237 1.435 sum -10.216 20.606 -16.791 28.476 Atomic orbital electron populations 1.20167 0.86740 1.03173 1.02985 1.22329 0.96930 0.90795 0.99400 1.21110 0.90893 0.99748 1.18526 1.21132 0.97413 0.84533 1.00971 1.20502 0.93083 0.98337 1.03502 1.48646 1.05117 1.03818 1.57348 1.20987 0.84556 0.91694 0.95422 0.86996 1.22270 1.04465 1.00200 0.95495 1.21650 0.95138 0.99225 1.00271 1.23303 0.88343 0.78018 0.79037 1.90655 1.45873 1.64849 1.38555 1.86569 1.40037 1.51158 1.46146 1.22916 0.84856 0.95333 0.99780 1.19881 0.84009 0.81637 0.86345 1.90720 1.36768 1.67059 1.46533 1.46368 1.18574 1.41876 1.28789 1.19182 0.97641 0.88210 0.81859 1.21164 1.03040 1.24475 1.09850 0.91804 1.24954 0.97437 0.96574 0.95002 1.69959 1.35153 1.35436 1.11587 0.86438 0.82925 0.79668 0.77666 1.20036 1.21023 1.20027 1.77308 0.86137 1.22643 1.25227 0.90514 0.90570 0.90966 0.83703 0.90059 0.89457 0.90995 0.91218 0.91890 0.88855 0.85987 0.86945 0.88336 0.88357 0.77419 0.95233 0.95234 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.45 36.00 0.38 -0.10 16 2 C 0.07 0.71 7.22 -82.41 -0.59 0.12 16 3 C -0.27 -2.43 10.65 -40.01 -0.43 -2.86 16 4 C 0.09 0.76 6.93 -82.26 -0.57 0.19 16 5 C -0.10 -0.52 9.95 36.00 0.36 -0.16 16 6 N -0.37 -3.72 3.28 -50.69 -0.17 -3.89 16 7 C 0.18 1.61 2.76 -67.93 -0.19 1.42 16 8 H 0.11 0.89 6.49 -51.93 -0.34 0.56 16 9 C -0.17 -1.54 9.19 37.16 0.34 -1.20 16 10 C -0.12 -1.24 5.55 -27.89 -0.15 -1.39 16 11 C 0.47 5.74 7.67 36.00 0.28 6.01 16 12 O -0.51 -6.56 13.72 -18.76 -0.26 -6.81 16 13 O -0.32 -4.89 9.75 -45.89 -0.45 -5.34 16 14 C 0.05 0.70 5.94 36.01 0.21 0.92 16 15 C 0.50 9.81 7.91 -10.99 -0.09 9.72 16 16 O -0.53 -12.96 16.50 -14.11 -0.23 -13.19 16 17 N -0.71 -14.35 5.55 -61.47 -0.34 -14.69 16 18 C 0.25 6.52 5.43 -5.20 -0.03 6.49 16 19 C -0.55 -14.54 9.28 -34.44 -0.32 -14.86 16 20 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.88 -25.70 13.29 55.43 0.74 -24.96 16 23 Si 0.91 20.53 29.54 -169.99 -5.02 15.51 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 N -0.29 -3.40 12.43 33.67 0.42 -2.98 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.35 8.14 -51.92 -0.42 -0.07 16 34 H 0.07 0.36 7.10 -51.93 -0.37 0.00 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 37 H 0.09 0.92 5.96 -51.93 -0.31 0.61 16 38 H 0.12 1.24 8.14 -51.92 -0.42 0.82 16 39 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.10 1.22 8.13 -51.93 -0.42 0.80 16 41 H 0.10 1.21 8.13 -51.93 -0.42 0.79 16 42 H 0.39 6.65 8.32 -40.82 -0.34 6.31 16 43 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 387.41 15.07 5.84 5.84 Total: -1.00 -34.50 387.41 -7.18 -41.68 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.81 Total: 2.88 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -0.90 Total: 5.97 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 0.65 Total: -46.53 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.94 Total: -25.35 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.50 -7.18 -41.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919313467.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.486 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds