Wall clock time and date at job start Tue Mar 31 2020 14:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39868 * 125.89798 * 2 1 4 4 C 1.35326 * 107.92035 * 179.71199 * 3 2 1 5 5 C 1.50694 * 126.13024 * 180.26371 * 4 3 2 6 6 N 1.34944 * 107.74189 * 0.42258 * 4 3 2 7 7 C 1.46499 * 126.03803 * 179.84075 * 6 4 3 8 8 H 1.09006 * 109.46719 * 359.71558 * 7 6 4 9 9 C 1.52996 * 109.47482 * 239.71683 * 7 6 4 10 10 C 1.52999 * 109.47630 * 119.71043 * 7 6 4 11 11 C 1.50696 * 109.47581 * 184.99936 * 10 7 6 12 12 O 1.20833 * 119.99595 * 0.02562 * 11 10 7 13 13 O 1.34224 * 120.00302 * 180.02562 * 11 10 7 14 14 C 1.45206 * 117.00077 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.47021 * 180.02562 * 14 13 11 16 16 O 1.21282 * 120.00041 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00037 * 180.02562 * 15 14 13 18 18 C 1.46500 * 120.00169 * 180.02562 * 17 15 14 19 19 C 1.50696 * 109.47324 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99822 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00339 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99769 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00300 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46819 * 59.99744 * 23 21 19 25 25 H 1.48494 * 109.47285 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47086 * 300.00040 * 23 21 19 27 27 N 1.30834 * 125.89951 * 179.97438 * 2 1 3 28 28 H 1.08992 * 109.47585 * 270.00225 * 1 2 3 29 29 H 1.08998 * 109.46889 * 30.00430 * 1 2 3 30 30 H 1.09005 * 109.46894 * 150.00072 * 1 2 3 31 31 H 1.07998 * 126.04310 * 359.97376 * 3 2 1 32 32 H 1.08998 * 109.47096 * 270.19035 * 5 4 3 33 33 H 1.09009 * 109.46745 * 30.18587 * 5 4 3 34 34 H 1.09000 * 109.47178 * 150.18483 * 5 4 3 35 35 H 1.09001 * 109.47371 * 300.00018 * 9 7 6 36 36 H 1.09008 * 109.46947 * 59.99360 * 9 7 6 37 37 H 1.08995 * 109.47545 * 179.97438 * 9 7 6 38 38 H 1.09009 * 109.46302 * 65.00341 * 10 7 6 39 39 H 1.08995 * 109.47159 * 305.00670 * 10 7 6 40 40 H 1.09000 * 109.47070 * 300.00162 * 14 13 11 41 41 H 1.09001 * 109.46626 * 60.00180 * 14 13 11 42 42 H 0.96996 * 119.99844 * 359.97438 * 17 15 14 43 43 H 1.09004 * 109.46923 * 300.00119 * 18 17 15 44 44 H 1.09004 * 109.47042 * 59.99705 * 18 17 15 45 45 H 0.97000 * 120.00540 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6143 0.7154 0.0065 5 6 4.8350 1.5988 0.0144 6 7 3.6087 -0.6341 0.0009 7 6 4.7898 -1.5008 0.0016 8 1 5.6908 -0.8871 0.0022 9 6 4.7752 -2.3839 -1.2476 10 6 4.7737 -2.3841 1.2508 11 6 6.0474 -3.1869 1.3150 12 8 6.8827 -3.0647 0.4505 13 8 6.2540 -4.0376 2.3324 14 6 7.5034 -4.7774 2.3298 15 6 7.5579 -5.6756 3.5386 16 8 6.6348 -5.6905 4.3252 17 7 8.6328 -6.4617 3.7462 18 6 8.6856 -7.3353 4.9211 19 6 9.9823 -8.1031 4.9184 20 1 10.6956 -7.9554 4.1211 21 6 10.2576 -8.9948 5.9333 22 7 9.3887 -9.1751 6.9039 23 14 11.8647 -9.9470 5.9296 24 1 13.0040 -8.9953 5.9694 25 1 11.9182 -10.8324 7.1205 26 1 11.9498 -10.7697 4.6963 27 7 2.2741 -1.0598 0.0005 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.9923 2.1598 -0.0004 32 1 5.1330 1.8161 -1.0113 33 1 4.6057 2.5308 0.5313 34 1 5.6493 1.0888 0.5291 35 1 3.8743 -2.9975 -1.2483 36 1 4.7867 -1.7546 -2.1376 37 1 5.6542 -3.0284 -1.2474 38 1 3.9198 -3.0603 1.2065 39 1 4.6946 -1.7566 2.1385 40 1 7.5657 -5.3822 1.4251 41 1 8.3395 -4.0786 2.3580 42 1 9.3712 -6.4496 3.1174 43 1 8.6223 -6.7312 5.8262 44 1 7.8497 -8.0345 4.8918 45 1 9.5825 -9.8021 7.6182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919313467.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:25 Heat of formation + Delta-G solvation = -81.502882 kcal Electronic energy + Delta-G solvation = -26185.389957 eV Core-core repulsion = 22203.628133 eV Total energy + Delta-G solvation = -3981.761824 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.40212 -41.80247 -40.44801 -38.01573 -36.49175 -36.20069 -34.43407 -33.76823 -32.02394 -31.06024 -29.65228 -28.55895 -28.22425 -27.83785 -24.76560 -23.74402 -21.93657 -21.67537 -21.45607 -19.84839 -19.25497 -19.00158 -18.04944 -17.88756 -17.53515 -16.96119 -16.81007 -16.47770 -16.29316 -15.93276 -15.53010 -14.89347 -14.68751 -14.61859 -14.45437 -14.22827 -14.08746 -14.04734 -13.92000 -13.72442 -13.62260 -13.23329 -13.16895 -12.99645 -12.96039 -12.72634 -12.68577 -12.47210 -12.28617 -12.25030 -11.93296 -11.70939 -11.53571 -11.38295 -10.94368 -10.81666 -10.03952 -9.95223 -9.43845 -8.30317 -6.47333 0.83491 0.93914 1.08220 1.43822 1.47414 1.53268 1.55518 1.60496 1.85249 2.33158 2.55068 3.04824 3.25092 3.42696 3.60277 3.70638 3.76513 3.88110 3.96850 4.04475 4.04830 4.16566 4.34828 4.41933 4.54513 4.65684 4.68860 4.72864 4.83563 4.85036 4.96348 5.02874 5.06231 5.08087 5.12559 5.20081 5.23826 5.36533 5.40152 5.61461 5.80784 5.81013 6.11203 6.45954 6.61518 6.76241 6.81198 7.19338 7.34453 8.81514 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.030970 B = 0.001799 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.871683 B =15557.952195 C =15940.780097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.060 3.940 3 C -0.286 4.286 4 C 0.082 3.918 5 C -0.095 4.095 6 N -0.375 5.375 7 C 0.178 3.822 8 H 0.128 0.872 9 C -0.160 4.160 10 C -0.117 4.117 11 C 0.477 3.523 12 O -0.513 6.513 13 O -0.349 6.349 14 C 0.061 3.939 15 C 0.497 3.503 16 O -0.586 6.586 17 N -0.698 5.698 18 C 0.266 3.734 19 C -0.558 4.558 20 H 0.087 0.913 21 C 0.004 3.996 22 N -0.930 5.930 23 Si 0.986 3.014 24 H -0.262 1.262 25 H -0.287 1.287 26 H -0.262 1.262 27 N -0.332 5.332 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.165 0.835 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.413 0.587 43 H -0.008 1.008 44 H -0.009 1.009 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.669 23.268 -18.943 31.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.106 4.106 3 C -0.315 4.315 4 C -0.045 4.045 5 C -0.153 4.153 6 N -0.158 5.158 7 C 0.076 3.924 8 H 0.145 0.855 9 C -0.217 4.217 10 C -0.155 4.155 11 C 0.321 3.679 12 O -0.402 6.402 13 O -0.264 6.264 14 C -0.016 4.016 15 C 0.283 3.717 16 O -0.467 6.467 17 N -0.349 5.349 18 C 0.144 3.856 19 C -0.596 4.596 20 H 0.105 0.895 21 C -0.196 4.196 22 N -0.568 5.568 23 Si 0.809 3.191 24 H -0.186 1.186 25 H -0.212 1.212 26 H -0.187 1.187 27 N -0.155 5.155 28 H 0.101 0.899 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.183 0.817 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.250 0.750 43 H 0.010 0.990 44 H 0.009 0.991 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.914 21.802 -18.466 30.243 hybrid contribution 0.776 -0.086 0.317 0.843 sum -9.138 21.716 -18.149 29.740 Atomic orbital electron populations 1.20266 0.85026 1.03992 1.03634 1.22904 0.98275 0.90913 0.98519 1.21460 0.90935 1.00493 1.18625 1.21744 0.98728 0.84289 0.99716 1.20633 0.91735 0.98321 1.04595 1.48705 1.04773 1.04454 1.57872 1.21013 0.85025 0.91753 0.94637 0.85454 1.22181 1.03554 1.00057 0.95924 1.21644 0.93689 0.99019 1.01184 1.23546 0.88776 0.77403 0.78191 1.90652 1.46178 1.64887 1.38437 1.86561 1.40326 1.51959 1.47588 1.22793 0.85934 0.95444 0.97392 1.20769 0.82501 0.81220 0.87206 1.90696 1.38558 1.68593 1.48846 1.46034 1.19882 1.41315 1.27700 1.18626 0.96603 0.87717 0.82691 1.21586 1.03274 1.24269 1.10488 0.89491 1.26066 1.01432 0.97672 0.94402 1.70126 1.37694 1.36443 1.12578 0.85190 0.77956 0.78099 0.77868 1.18617 1.21221 1.18674 1.77257 0.87130 1.24025 1.27081 0.89860 0.88539 0.91342 0.81698 0.88810 0.87874 0.90530 0.92394 0.91378 0.89324 0.86567 0.86247 0.85482 0.85247 0.75036 0.98989 0.99072 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 10.45 71.24 0.74 -0.14 16 2 C 0.06 1.15 7.22 43.10 0.31 1.46 16 3 C -0.29 -4.68 10.65 21.99 0.23 -4.45 16 4 C 0.08 1.31 6.93 41.41 0.29 1.60 16 5 C -0.09 -0.79 9.95 71.23 0.71 -0.08 16 6 N -0.37 -7.29 3.28 -314.30 -1.03 -8.32 16 7 C 0.18 3.05 2.76 44.99 0.12 3.17 16 8 H 0.13 1.77 6.49 -2.38 -0.02 1.75 16 9 C -0.16 -2.82 9.19 71.98 0.66 -2.16 16 10 C -0.12 -2.24 5.55 29.85 0.17 -2.07 16 11 C 0.48 10.95 7.67 71.23 0.55 11.49 16 12 O -0.51 -11.99 13.72 21.94 0.30 -11.69 16 13 O -0.35 -10.14 9.75 -45.00 -0.44 -10.58 16 14 C 0.06 1.65 5.94 71.24 0.42 2.07 16 15 C 0.50 19.57 7.91 87.66 0.69 20.27 16 16 O -0.59 -29.48 16.50 15.76 0.26 -29.22 16 17 N -0.70 -28.30 5.55 -466.78 -2.59 -30.89 16 18 C 0.27 14.29 5.43 85.63 0.46 14.75 16 19 C -0.56 -29.65 9.28 25.60 0.24 -29.41 16 20 H 0.09 4.11 7.60 -2.91 -0.02 4.09 16 21 C 0.00 0.23 5.46 84.65 0.46 0.69 16 22 N -0.93 -55.44 13.29 21.45 0.28 -55.16 16 23 Si 0.99 41.56 29.54 68.60 2.03 43.58 16 24 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 25 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 27 N -0.33 -7.74 12.43 -47.39 -0.59 -8.33 16 28 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 32 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 34 H 0.08 0.58 7.10 -2.39 -0.02 0.56 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.09 1.65 5.96 -2.39 -0.01 1.63 16 38 H 0.12 2.39 8.14 -2.38 -0.02 2.37 16 39 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.13 2.77 8.13 -2.39 -0.02 2.75 16 41 H 0.13 2.75 8.13 -2.39 -0.02 2.73 16 42 H 0.41 13.28 8.32 -92.71 -0.77 12.51 16 43 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 44 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 45 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -77.41 387.41 4.52 -72.88 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.23 Total: 20.54 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 6.06 Total: 17.19 kcal Atomic # 7 Polarization: -98.78 SS G_CDS: -3.92 Total: -102.70 kcal Atomic # 8 Polarization: -51.62 SS G_CDS: 0.12 Total: -51.50 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Total: -77.41 4.52 -72.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919313467.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.621 kcal (2) G-P(sol) polarization free energy of solvation -77.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds