Wall clock time and date at job start Tue Mar 31 2020 14:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39873 * 125.89595 * 2 1 4 4 C 1.35318 * 107.91457 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.12233 * 180.02562 * 4 3 2 6 6 N 1.34942 * 107.75021 * 359.97438 * 4 3 2 7 7 C 1.46502 * 126.03662 * 179.97438 * 6 4 3 8 8 H 1.08993 * 109.47062 * 0.02562 * 7 6 4 9 9 C 1.53003 * 109.46760 * 120.00723 * 7 6 4 10 10 C 1.52998 * 109.47079 * 240.00155 * 7 6 4 11 11 C 1.50699 * 109.46969 * 175.00117 * 10 7 6 12 12 O 1.20825 * 120.00096 * 0.02562 * 11 10 7 13 13 O 1.34230 * 120.00237 * 179.97438 * 11 10 7 14 14 C 1.45201 * 117.00342 * 180.02562 * 13 11 10 15 15 C 1.50695 * 109.47421 * 180.02562 * 14 13 11 16 16 O 1.21288 * 119.99810 * 359.97438 * 15 14 13 17 17 N 1.34770 * 120.00530 * 179.97438 * 15 14 13 18 18 C 1.46496 * 120.00450 * 179.97438 * 17 15 14 19 19 C 1.50704 * 109.47186 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99978 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99813 * 180.02562 * 19 18 17 22 22 N 1.31520 * 119.99893 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00348 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46685 * 89.99987 * 23 21 19 25 25 H 1.48492 * 109.47308 * 210.00291 * 23 21 19 26 26 H 1.48505 * 109.46909 * 330.00478 * 23 21 19 27 27 N 1.30830 * 125.89753 * 179.68720 * 2 1 3 28 28 H 1.09001 * 109.46953 * 90.00178 * 1 2 3 29 29 H 1.09000 * 109.47318 * 209.99776 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.00407 * 1 2 3 31 31 H 1.07994 * 126.04093 * 359.97251 * 3 2 1 32 32 H 1.08993 * 109.47541 * 89.97273 * 5 4 3 33 33 H 1.09004 * 109.47268 * 209.97579 * 5 4 3 34 34 H 1.09004 * 109.47636 * 329.97065 * 5 4 3 35 35 H 1.09001 * 109.47511 * 59.99697 * 9 7 6 36 36 H 1.09003 * 109.47175 * 180.02562 * 9 7 6 37 37 H 1.09003 * 109.46673 * 299.99982 * 9 7 6 38 38 H 1.09001 * 109.47465 * 294.99770 * 10 7 6 39 39 H 1.08998 * 109.46926 * 55.00777 * 10 7 6 40 40 H 1.09003 * 109.46732 * 300.00332 * 14 13 11 41 41 H 1.09002 * 109.46886 * 60.00314 * 14 13 11 42 42 H 0.97006 * 119.99886 * 0.02562 * 17 15 14 43 43 H 1.08997 * 109.47292 * 300.00492 * 18 17 15 44 44 H 1.09002 * 109.46842 * 60.00560 * 18 17 15 45 45 H 0.96998 * 120.00173 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3272 1.1331 0.0000 4 6 3.6142 0.7153 0.0006 5 6 4.8350 1.5989 0.0013 6 7 3.6088 -0.6341 0.0015 7 6 4.7900 -1.5007 0.0018 8 1 5.6908 -0.8871 0.0017 9 6 4.7746 -2.3832 1.2516 10 6 4.7742 -2.3847 -1.2468 11 6 6.0481 -3.1875 -1.3100 12 8 6.8826 -3.0655 -0.4448 13 8 6.2551 -4.0389 -2.3268 14 6 7.5041 -4.7795 -2.3227 15 6 7.5597 -5.6774 -3.5316 16 8 6.6373 -5.6922 -4.3190 17 7 8.6344 -6.4641 -3.7380 18 6 8.6882 -7.3374 -4.9129 19 6 9.9845 -8.1059 -4.9087 20 1 10.6968 -7.9589 -4.1103 21 6 10.2611 -8.9968 -5.9240 22 7 11.3927 -9.6672 -5.9205 23 14 9.0288 -9.2518 -7.3045 24 1 9.3118 -8.2942 -8.4036 25 1 9.1401 -10.6409 -7.8172 26 1 7.6547 -9.0226 -6.7899 27 7 2.2742 -1.0598 0.0058 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.9923 2.1598 -0.0004 32 1 5.1286 1.8122 1.0291 33 1 5.6516 1.0909 -0.5118 34 1 4.6080 2.5328 -0.5129 35 1 3.8737 -2.9968 1.2522 36 1 5.6537 -3.0277 1.2522 37 1 4.7858 -1.7533 2.1412 38 1 3.9205 -3.0610 -1.2026 39 1 4.6956 -1.7577 -2.1349 40 1 8.3406 -4.0812 -2.3503 41 1 7.5650 -5.3839 -1.4176 42 1 9.3720 -6.4526 -3.1080 43 1 7.8520 -8.0360 -4.8850 44 1 8.6267 -6.7330 -5.8179 45 1 11.5871 -10.2942 -6.6346 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919313510.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:28 Heat of formation + Delta-G solvation = -55.275788 kcal Electronic energy + Delta-G solvation = -26244.371141 eV Core-core repulsion = 22263.746609 eV Total energy + Delta-G solvation = -3980.624532 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.72183 -40.82892 -39.00190 -37.00931 -35.70657 -34.42777 -33.19179 -32.47254 -31.39673 -29.97527 -28.69688 -27.94651 -27.29995 -26.98170 -23.20690 -22.15496 -21.05182 -20.79909 -20.18844 -19.18385 -18.14503 -17.64400 -17.04983 -16.82123 -16.44682 -15.78438 -15.54495 -15.37426 -15.07928 -14.64964 -14.25596 -14.07357 -13.85655 -13.78805 -13.62739 -13.43990 -13.24973 -13.09638 -12.80025 -12.60940 -12.57495 -12.42020 -12.36354 -12.19727 -12.00982 -11.78331 -11.63301 -11.10620 -10.92229 -10.80312 -10.77456 -10.71394 -10.03135 -9.58148 -9.42000 -9.36152 -8.85171 -8.79873 -8.32100 -6.27253 -4.30611 1.51740 1.84880 1.89952 2.43259 2.48633 2.96385 3.23023 3.30034 3.37766 3.76514 3.95256 4.18547 4.24277 4.28171 4.44369 4.57255 4.64643 4.67505 4.97826 4.99520 5.02493 5.05588 5.07400 5.10261 5.15128 5.16289 5.28773 5.31076 5.35694 5.39222 5.46384 5.58135 5.62227 5.80123 5.91973 6.15521 6.42314 6.68786 6.71499 6.96835 7.03865 7.27742 7.41873 7.47325 8.00180 8.36749 8.63191 8.75265 9.31638 10.84431 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.027180 B = 0.001899 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.927883 B =14740.196706 C =15233.892870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.072 3.928 3 C -0.273 4.273 4 C 0.087 3.913 5 C -0.096 4.096 6 N -0.367 5.367 7 C 0.175 3.825 8 H 0.112 0.888 9 C -0.167 4.167 10 C -0.124 4.124 11 C 0.470 3.530 12 O -0.508 6.508 13 O -0.326 6.326 14 C 0.049 3.951 15 C 0.501 3.499 16 O -0.536 6.536 17 N -0.699 5.699 18 C 0.222 3.778 19 C -0.547 4.547 20 H 0.081 0.919 21 C 0.079 3.921 22 N -0.890 5.890 23 Si 0.877 3.123 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.260 1.260 27 N -0.291 5.291 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.145 0.855 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.122 0.878 39 H 0.112 0.888 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.399 0.601 43 H 0.028 0.972 44 H 0.024 0.976 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.061 23.171 15.107 31.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.095 4.095 3 C -0.303 4.303 4 C -0.040 4.040 5 C -0.154 4.154 6 N -0.150 5.150 7 C 0.073 3.927 8 H 0.130 0.870 9 C -0.225 4.225 10 C -0.162 4.162 11 C 0.313 3.687 12 O -0.397 6.397 13 O -0.240 6.240 14 C -0.028 4.028 15 C 0.284 3.716 16 O -0.413 6.413 17 N -0.349 5.349 18 C 0.100 3.900 19 C -0.585 4.585 20 H 0.099 0.901 21 C -0.126 4.126 22 N -0.527 5.527 23 Si 0.703 3.297 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.185 1.185 27 N -0.113 5.113 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.163 0.837 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.140 0.860 39 H 0.131 0.869 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.233 0.767 43 H 0.046 0.954 44 H 0.041 0.959 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.165 21.639 14.659 30.732 hybrid contribution 0.090 0.608 -0.433 0.752 sum -16.074 22.248 14.226 30.915 Atomic orbital electron populations 1.20170 0.86734 1.03185 1.02978 1.22334 0.96933 0.90800 0.99386 1.21110 0.90891 0.99754 1.18502 1.21131 0.97419 0.84524 1.00951 1.20503 0.93069 0.98337 1.03526 1.48641 1.05111 1.03820 1.57385 1.20987 0.84583 0.91698 0.95402 0.86973 1.22276 1.04462 1.00219 0.95505 1.21648 0.95074 0.99204 1.00310 1.23306 0.88363 0.78009 0.79019 1.90661 1.45860 1.64773 1.38432 1.86559 1.40000 1.51177 1.46294 1.22869 0.85037 0.95365 0.99560 1.19917 0.83755 0.81493 0.86430 1.90713 1.36857 1.67178 1.46596 1.46068 1.19017 1.41550 1.28285 1.19564 0.98335 0.88940 0.83128 1.21060 1.02107 1.23930 1.11392 0.90113 1.24791 0.95306 0.94736 0.97723 1.69875 1.23164 1.26136 1.33517 0.86815 0.82474 0.77918 0.82491 1.19773 1.20800 1.18477 1.77305 0.86134 1.22645 1.25250 0.90524 0.90965 0.90557 0.83692 0.90036 0.90999 0.89455 0.91217 0.88850 0.91860 0.85992 0.86948 0.88137 0.88101 0.76689 0.95395 0.95854 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.45 36.01 0.38 -0.09 16 2 C 0.07 0.69 7.22 -82.40 -0.59 0.10 16 3 C -0.27 -2.36 10.65 -40.01 -0.43 -2.79 16 4 C 0.09 0.74 6.93 -82.27 -0.57 0.17 16 5 C -0.10 -0.50 9.95 36.00 0.36 -0.14 16 6 N -0.37 -3.62 3.28 -50.70 -0.17 -3.79 16 7 C 0.18 1.55 2.76 -67.93 -0.19 1.36 16 8 H 0.11 0.86 6.48 -51.93 -0.34 0.53 16 9 C -0.17 -1.50 9.19 37.16 0.34 -1.16 16 10 C -0.12 -1.18 5.55 -27.88 -0.15 -1.33 16 11 C 0.47 5.50 7.68 36.01 0.28 5.78 16 12 O -0.51 -6.33 13.72 -18.75 -0.26 -6.59 16 13 O -0.33 -4.68 9.75 -45.90 -0.45 -5.13 16 14 C 0.05 0.68 5.94 36.00 0.21 0.89 16 15 C 0.50 9.32 7.91 -10.99 -0.09 9.23 16 16 O -0.54 -12.23 16.50 -14.11 -0.23 -12.46 16 17 N -0.70 -13.58 5.55 -61.48 -0.34 -13.92 16 18 C 0.22 5.32 4.50 -5.19 -0.02 5.30 16 19 C -0.55 -14.68 9.83 -34.44 -0.34 -15.02 16 20 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 21 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 22 N -0.89 -26.03 13.96 55.43 0.77 -25.26 16 23 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 27 N -0.29 -3.32 12.43 33.67 0.42 -2.90 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.35 7.09 -51.93 -0.37 -0.02 16 34 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.90 5.96 -51.93 -0.31 0.59 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.10 1.17 8.13 -51.93 -0.42 0.75 16 41 H 0.10 1.19 8.13 -51.93 -0.42 0.77 16 42 H 0.40 6.63 8.32 -40.82 -0.34 6.29 16 43 H 0.03 0.71 7.20 -51.93 -0.37 0.33 16 44 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 45 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 383.80 15.07 5.78 5.78 Total: -1.00 -34.51 383.80 -6.82 -41.34 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.77 Total: 2.09 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -0.91 Total: 4.40 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.68 Total: -45.86 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.94 Total: -24.17 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.51 -6.82 -41.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919313510.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.941 kcal (2) G-P(sol) polarization free energy of solvation -34.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds