Wall clock time and date at job start Tue Mar 31 2020 14:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39873 * 125.89595 * 2 1 4 4 C 1.35318 * 107.91457 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.12233 * 180.02562 * 4 3 2 6 6 N 1.34942 * 107.75021 * 359.97438 * 4 3 2 7 7 C 1.46502 * 126.03662 * 179.97438 * 6 4 3 8 8 H 1.08993 * 109.47062 * 0.02562 * 7 6 4 9 9 C 1.53003 * 109.46760 * 120.00723 * 7 6 4 10 10 C 1.52998 * 109.47079 * 240.00155 * 7 6 4 11 11 C 1.50699 * 109.46969 * 175.00117 * 10 7 6 12 12 O 1.20825 * 120.00096 * 0.02562 * 11 10 7 13 13 O 1.34230 * 120.00237 * 179.97438 * 11 10 7 14 14 C 1.45201 * 117.00342 * 180.02562 * 13 11 10 15 15 C 1.50695 * 109.47421 * 180.02562 * 14 13 11 16 16 O 1.21288 * 119.99810 * 359.97438 * 15 14 13 17 17 N 1.34770 * 120.00530 * 179.97438 * 15 14 13 18 18 C 1.46496 * 120.00450 * 179.97438 * 17 15 14 19 19 C 1.50704 * 109.47186 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99978 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99813 * 180.02562 * 19 18 17 22 22 N 1.31520 * 119.99893 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00348 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46685 * 89.99987 * 23 21 19 25 25 H 1.48492 * 109.47308 * 210.00291 * 23 21 19 26 26 H 1.48505 * 109.46909 * 330.00478 * 23 21 19 27 27 N 1.30830 * 125.89753 * 179.68720 * 2 1 3 28 28 H 1.09001 * 109.46953 * 90.00178 * 1 2 3 29 29 H 1.09000 * 109.47318 * 209.99776 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.00407 * 1 2 3 31 31 H 1.07994 * 126.04093 * 359.97251 * 3 2 1 32 32 H 1.08993 * 109.47541 * 89.97273 * 5 4 3 33 33 H 1.09004 * 109.47268 * 209.97579 * 5 4 3 34 34 H 1.09004 * 109.47636 * 329.97065 * 5 4 3 35 35 H 1.09001 * 109.47511 * 59.99697 * 9 7 6 36 36 H 1.09003 * 109.47175 * 180.02562 * 9 7 6 37 37 H 1.09003 * 109.46673 * 299.99982 * 9 7 6 38 38 H 1.09001 * 109.47465 * 294.99770 * 10 7 6 39 39 H 1.08998 * 109.46926 * 55.00777 * 10 7 6 40 40 H 1.09003 * 109.46732 * 300.00332 * 14 13 11 41 41 H 1.09002 * 109.46886 * 60.00314 * 14 13 11 42 42 H 0.97006 * 119.99886 * 0.02562 * 17 15 14 43 43 H 1.08997 * 109.47292 * 300.00492 * 18 17 15 44 44 H 1.09002 * 109.46842 * 60.00560 * 18 17 15 45 45 H 0.96998 * 120.00173 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3272 1.1331 0.0000 4 6 3.6142 0.7153 0.0006 5 6 4.8350 1.5989 0.0013 6 7 3.6088 -0.6341 0.0015 7 6 4.7900 -1.5007 0.0018 8 1 5.6908 -0.8871 0.0017 9 6 4.7746 -2.3832 1.2516 10 6 4.7742 -2.3847 -1.2468 11 6 6.0481 -3.1875 -1.3100 12 8 6.8826 -3.0655 -0.4448 13 8 6.2551 -4.0389 -2.3268 14 6 7.5041 -4.7795 -2.3227 15 6 7.5597 -5.6774 -3.5316 16 8 6.6373 -5.6922 -4.3190 17 7 8.6344 -6.4641 -3.7380 18 6 8.6882 -7.3374 -4.9129 19 6 9.9845 -8.1059 -4.9087 20 1 10.6968 -7.9589 -4.1103 21 6 10.2611 -8.9968 -5.9240 22 7 11.3927 -9.6672 -5.9205 23 14 9.0288 -9.2518 -7.3045 24 1 9.3118 -8.2942 -8.4036 25 1 9.1401 -10.6409 -7.8172 26 1 7.6547 -9.0226 -6.7899 27 7 2.2742 -1.0598 0.0058 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.9923 2.1598 -0.0004 32 1 5.1286 1.8122 1.0291 33 1 5.6516 1.0909 -0.5118 34 1 4.6080 2.5328 -0.5129 35 1 3.8737 -2.9968 1.2522 36 1 5.6537 -3.0277 1.2522 37 1 4.7858 -1.7533 2.1412 38 1 3.9205 -3.0610 -1.2026 39 1 4.6956 -1.7577 -2.1349 40 1 8.3406 -4.0812 -2.3503 41 1 7.5650 -5.3839 -1.4176 42 1 9.3720 -6.4526 -3.1080 43 1 7.8520 -8.0360 -4.8850 44 1 8.6267 -6.7330 -5.8179 45 1 11.5871 -10.2942 -6.6346 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919313510.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:28 Heat of formation + Delta-G solvation = -77.644176 kcal Electronic energy + Delta-G solvation = -26245.341107 eV Core-core repulsion = 22263.746609 eV Total energy + Delta-G solvation = -3981.594498 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.40358 -41.80847 -40.49676 -38.02384 -36.49628 -36.22199 -34.48082 -33.76973 -32.03382 -31.27646 -29.87231 -28.57014 -28.40934 -27.83957 -24.38644 -23.64883 -21.94418 -21.75052 -21.45770 -19.85140 -19.38850 -19.00285 -18.17174 -18.02481 -17.57220 -16.91454 -16.84625 -16.51558 -16.27764 -15.90311 -15.56834 -14.94732 -14.76288 -14.72038 -14.45893 -14.34560 -14.27725 -14.04976 -13.96911 -13.79813 -13.63483 -13.23690 -13.17187 -13.10276 -12.98995 -12.73691 -12.71238 -12.47222 -12.28693 -11.95243 -11.93665 -11.72221 -11.67265 -11.38555 -11.00444 -10.93640 -10.06611 -10.03947 -9.43911 -8.41340 -6.48969 0.83195 0.94045 1.06834 1.32414 1.35427 1.46589 1.49487 1.59142 1.85136 2.26902 2.45769 2.94020 3.25000 3.42628 3.59189 3.68065 3.75644 3.87772 3.96835 4.03895 4.05263 4.16462 4.34926 4.41955 4.54367 4.65225 4.68711 4.72553 4.73362 4.83418 4.85070 4.96353 4.98514 5.04037 5.07127 5.12454 5.20653 5.24459 5.36344 5.38055 5.80890 6.04010 6.11011 6.45469 6.51494 6.69900 6.81031 7.10083 7.25628 8.73086 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.027180 B = 0.001899 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.927883 B =14740.196706 C =15233.892870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.060 3.940 3 C -0.286 4.286 4 C 0.082 3.918 5 C -0.095 4.095 6 N -0.375 5.375 7 C 0.177 3.823 8 H 0.127 0.873 9 C -0.160 4.160 10 C -0.116 4.116 11 C 0.477 3.523 12 O -0.513 6.513 13 O -0.347 6.347 14 C 0.058 3.942 15 C 0.503 3.497 16 O -0.580 6.580 17 N -0.696 5.696 18 C 0.232 3.768 19 C -0.549 4.549 20 H 0.062 0.938 21 C 0.027 3.973 22 N -0.929 5.929 23 Si 0.936 3.064 24 H -0.264 1.264 25 H -0.274 1.274 26 H -0.260 1.260 27 N -0.332 5.332 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.165 0.835 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.414 0.586 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.713 25.065 15.609 33.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.106 4.106 3 C -0.315 4.315 4 C -0.045 4.045 5 C -0.153 4.153 6 N -0.158 5.158 7 C 0.075 3.925 8 H 0.145 0.855 9 C -0.218 4.218 10 C -0.154 4.154 11 C 0.321 3.679 12 O -0.402 6.402 13 O -0.262 6.262 14 C -0.018 4.018 15 C 0.289 3.711 16 O -0.461 6.461 17 N -0.348 5.348 18 C 0.108 3.892 19 C -0.587 4.587 20 H 0.081 0.919 21 C -0.173 4.173 22 N -0.568 5.568 23 Si 0.760 3.240 24 H -0.189 1.189 25 H -0.199 1.199 26 H -0.184 1.184 27 N -0.154 5.154 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.183 0.817 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.121 0.879 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.250 0.750 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.804 23.555 15.202 32.685 hybrid contribution 0.298 0.081 -0.507 0.594 sum -16.506 23.637 14.694 32.358 Atomic orbital electron populations 1.20267 0.85022 1.03974 1.03647 1.22906 0.98276 0.90914 0.98532 1.21456 0.90940 1.00491 1.18610 1.21731 0.98705 0.84302 0.99732 1.20630 0.91760 0.98342 1.04567 1.48702 1.04781 1.04437 1.57881 1.21012 0.85009 0.91764 0.94695 0.85516 1.22186 1.03557 1.00073 0.95941 1.21636 0.93666 0.98999 1.01141 1.23556 0.88755 0.77419 0.78205 1.90660 1.46244 1.64889 1.38428 1.86548 1.40241 1.51883 1.47570 1.22781 0.86017 0.95511 0.97514 1.20645 0.82289 0.81024 0.87180 1.90691 1.38311 1.68503 1.48559 1.45855 1.20196 1.41263 1.27458 1.19173 0.96237 0.89025 0.84731 1.21273 1.02753 1.23936 1.10689 0.91938 1.25588 0.96919 0.94645 1.00192 1.69976 1.24943 1.27157 1.34722 0.85874 0.80076 0.78310 0.79745 1.18928 1.19895 1.18417 1.77253 0.87103 1.23991 1.27061 0.89822 0.91340 0.88589 0.81732 0.88876 0.90514 0.87881 0.92341 0.89356 0.91466 0.86473 0.86148 0.85357 0.85587 0.75002 0.96576 0.96594 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.45 71.24 0.74 -0.09 16 2 C 0.06 1.11 7.22 43.11 0.31 1.42 16 3 C -0.29 -4.51 10.65 21.99 0.23 -4.28 16 4 C 0.08 1.27 6.93 41.41 0.29 1.55 16 5 C -0.09 -0.75 9.95 71.24 0.71 -0.04 16 6 N -0.37 -7.02 3.28 -314.31 -1.03 -8.05 16 7 C 0.18 2.90 2.76 44.99 0.12 3.03 16 8 H 0.13 1.69 6.48 -2.39 -0.02 1.67 16 9 C -0.16 -2.74 9.19 71.98 0.66 -2.08 16 10 C -0.12 -2.08 5.55 29.85 0.17 -1.91 16 11 C 0.48 10.35 7.68 71.24 0.55 10.90 16 12 O -0.51 -11.65 13.72 21.97 0.30 -11.35 16 13 O -0.35 -9.40 9.75 -45.06 -0.44 -9.84 16 14 C 0.06 1.48 5.94 71.23 0.42 1.90 16 15 C 0.50 18.12 7.91 87.66 0.69 18.81 16 16 O -0.58 -26.26 16.50 15.74 0.26 -26.00 16 17 N -0.70 -26.41 5.55 -466.80 -2.59 -29.00 16 18 C 0.23 11.03 4.50 85.64 0.38 11.42 16 19 C -0.55 -29.55 9.83 25.60 0.25 -29.30 16 20 H 0.06 3.51 7.84 -2.91 -0.02 3.49 16 21 C 0.03 1.51 5.47 84.65 0.46 1.97 16 22 N -0.93 -54.71 13.96 21.45 0.30 -54.41 16 23 Si 0.94 43.34 27.47 68.60 1.88 45.22 16 24 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 26 H -0.26 -11.92 6.54 99.48 0.65 -11.27 16 27 N -0.33 -7.46 12.43 -47.38 -0.59 -8.04 16 28 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 32 H 0.09 0.54 8.14 -2.39 -0.02 0.53 16 33 H 0.08 0.54 7.09 -2.38 -0.02 0.53 16 34 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.09 1.60 5.96 -2.39 -0.01 1.58 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.12 1.96 8.14 -2.39 -0.02 1.95 16 40 H 0.13 2.58 8.13 -2.39 -0.02 2.56 16 41 H 0.13 2.60 8.13 -2.39 -0.02 2.58 16 42 H 0.41 13.23 8.32 -92.70 -0.77 12.46 16 43 H 0.02 0.82 7.20 -2.39 -0.02 0.80 16 44 H 0.02 0.79 7.57 -2.39 -0.02 0.78 16 45 H 0.27 14.98 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -74.25 383.80 4.28 -69.97 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.18 Total: 18.19 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 6.00 Total: 13.30 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -3.91 Total: -99.50 kcal Atomic # 8 Polarization: -47.31 SS G_CDS: 0.12 Total: -47.19 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.88 Total: 45.22 kcal Total: -74.25 4.28 -69.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919313510.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.674 kcal (2) G-P(sol) polarization free energy of solvation -74.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds