Wall clock time and date at job start Tue Mar 31 2020 14:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00025 * 2 1 4 4 H 1.48498 * 109.47126 * 240.00047 * 3 2 1 5 5 H 1.48503 * 109.47153 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46872 * 120.00130 * 3 2 1 7 7 C 1.37875 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00055 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00308 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47326 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47241 * 180.02562 * 10 9 7 12 12 C 1.34781 * 119.99885 * 180.02562 * 11 10 9 13 13 O 1.21578 * 120.00172 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99384 * 179.97438 * 12 11 10 15 15 C 1.46504 * 119.99694 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47384 * 187.26749 * 15 14 12 17 17 H 1.09002 * 110.59581 * 307.33494 * 16 15 14 18 18 C 1.54939 * 110.66805 * 184.32399 * 16 15 14 19 19 C 1.54601 * 102.91824 * 204.15283 * 18 16 15 20 20 C 1.53989 * 105.14001 * 21.96162 * 19 18 16 21 21 N 1.47894 * 107.06065 * 1.22002 * 20 19 18 22 22 C 1.46904 * 111.00137 * 214.15656 * 21 20 19 23 23 C 1.53002 * 109.47269 * 296.00547 * 22 21 20 24 24 F 1.39902 * 109.46881 * 60.66285 * 23 22 21 25 25 F 1.39897 * 109.47120 * 180.66334 * 23 22 21 26 26 F 1.39895 * 109.46859 * 300.66443 * 23 22 21 27 27 H 0.97000 * 120.00100 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.46930 * 60.00097 * 9 7 2 29 29 H 1.08997 * 109.47105 * 300.00317 * 9 7 2 30 30 H 1.09005 * 109.47124 * 59.99734 * 10 9 7 31 31 H 1.09007 * 109.46979 * 300.00059 * 10 9 7 32 32 H 0.97000 * 119.99707 * 359.97438 * 11 10 9 33 33 H 0.96989 * 120.00593 * 0.02562 * 14 12 11 34 34 H 1.08999 * 109.46904 * 67.26870 * 15 14 12 35 35 H 1.09000 * 109.47244 * 307.27282 * 15 14 12 36 36 H 1.08997 * 110.72125 * 85.79981 * 18 16 15 37 37 H 1.08995 * 110.72148 * 322.51043 * 18 16 15 38 38 H 1.08996 * 110.30759 * 263.03734 * 19 18 16 39 39 H 1.09008 * 110.38857 * 140.91748 * 19 18 16 40 40 H 1.09002 * 109.92173 * 120.57928 * 20 19 18 41 41 H 1.09003 * 109.91602 * 241.86716 * 20 19 18 42 42 H 1.09006 * 109.47112 * 56.00761 * 22 21 20 43 43 H 1.09001 * 109.47173 * 176.00487 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 6 2.1867 -6.0980 -0.0007 13 8 3.4024 -6.0980 -0.0003 14 7 1.5127 -7.2652 -0.0008 15 6 2.2452 -8.5340 -0.0009 16 6 1.2610 -9.6911 -0.1834 17 1 0.4566 -9.6295 0.5496 18 6 1.9927 -11.0529 -0.0794 19 6 1.0682 -12.0035 -0.8742 20 6 0.2520 -11.0866 -1.8039 21 7 0.7161 -9.7028 -1.5651 22 6 -0.3897 -8.7455 -1.7031 23 6 -0.9008 -8.7610 -3.1452 24 9 -1.3672 -10.0416 -3.4608 25 9 -1.9437 -7.8384 -3.2802 26 9 0.1413 -8.4171 -4.0129 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.8719 -3.6043 0.8895 31 1 2.8719 -3.6043 -0.8906 32 1 0.5427 -4.9308 -0.0011 33 1 0.5428 -7.2652 -0.0015 34 1 2.7707 -8.6501 0.9469 35 1 2.9658 -8.5374 -0.8187 36 1 2.0703 -11.3705 0.9604 37 1 2.9782 -10.9975 -0.5416 38 1 0.4056 -12.5413 -0.1961 39 1 1.6601 -12.7065 -1.4605 40 1 0.4261 -11.3624 -2.8440 41 1 -0.8091 -11.1683 -1.5680 42 1 -1.1985 -9.0248 -1.0279 43 1 -0.0372 -7.7447 -1.4533 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921909089.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:43 Heat of formation + Delta-G solvation = -182.649500 kcal Electronic energy + Delta-G solvation = -28148.674128 eV Core-core repulsion = 23620.669518 eV Total energy + Delta-G solvation = -4528.004611 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.30814 -47.88193 -47.70431 -40.21268 -39.12876 -35.14634 -34.39124 -33.48245 -32.81380 -30.60253 -29.15896 -28.34979 -25.60885 -24.33075 -23.39265 -21.58638 -21.17948 -20.98670 -20.43188 -18.81706 -18.70774 -18.01988 -17.53795 -16.79561 -16.36737 -16.01491 -15.53403 -15.32085 -14.83296 -14.71796 -14.57572 -14.50225 -14.23421 -14.13373 -13.95450 -13.87981 -13.75191 -13.57384 -13.44195 -12.95947 -12.90204 -12.38109 -12.26510 -12.07316 -11.72749 -11.58496 -11.52903 -11.18273 -11.02110 -11.00000 -10.63685 -10.29935 -9.95317 -9.54674 -9.26411 -9.15333 -9.03755 -8.47350 -8.25283 -6.07716 -4.10343 2.40253 2.95149 3.07064 3.32857 3.36474 3.40235 3.48659 3.57853 3.73919 3.97912 4.14779 4.27811 4.40817 4.46654 4.61509 4.64457 4.65958 4.73035 4.88512 5.05530 5.21735 5.29407 5.33699 5.37898 5.51097 5.61549 5.70691 5.78726 6.20577 6.25084 6.29395 6.41181 6.51784 6.78827 6.99026 7.15363 7.57203 7.64605 7.91295 8.26161 8.39948 8.93201 8.98551 9.54343 11.03943 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.016629 B = 0.002721 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.432907 B =10289.110795 C =11552.247467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.739 5.739 12 C 0.699 3.301 13 O -0.593 6.593 14 N -0.757 5.757 15 C 0.152 3.848 16 C 0.056 3.944 17 H 0.067 0.933 18 C -0.113 4.113 19 C -0.130 4.130 20 C 0.025 3.975 21 N -0.503 5.503 22 C -0.009 4.009 23 C 0.458 3.542 24 F -0.186 7.186 25 F -0.181 7.181 26 F -0.169 7.169 27 H 0.262 0.738 28 H 0.022 0.978 29 H 0.021 0.979 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.392 0.608 33 H 0.387 0.613 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.054 0.946 42 H 0.083 0.917 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.143 -26.886 -1.600 27.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.017 3.983 11 N -0.392 5.392 12 C 0.399 3.601 13 O -0.472 6.472 14 N -0.416 5.416 15 C 0.027 3.973 16 C -0.052 4.052 17 H 0.085 0.915 18 C -0.152 4.152 19 C -0.168 4.168 20 C -0.102 4.102 21 N -0.228 5.228 22 C -0.140 4.140 23 C 0.404 3.596 24 F -0.167 7.167 25 F -0.162 7.162 26 F -0.151 7.151 27 H 0.072 0.928 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.224 0.776 33 H 0.222 0.778 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.073 0.927 42 H 0.101 0.899 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.759 -26.568 -2.014 26.787 hybrid contribution -1.415 0.786 0.267 1.641 sum -4.174 -25.782 -1.747 26.176 Atomic orbital electron populations 1.69945 1.06089 1.26961 1.50390 1.24991 0.94892 0.99390 0.94998 0.86569 0.79511 0.82638 0.78795 1.20085 1.21272 1.20116 1.21019 0.93248 0.90373 1.51361 0.92258 1.19316 0.94245 0.91077 0.97773 1.21600 0.95638 0.80336 1.00697 1.45551 1.09748 1.05421 1.78527 1.16042 0.85684 0.80391 0.78019 1.90896 1.11682 1.86551 1.58031 1.45385 1.08953 1.05189 1.82102 1.21132 0.93662 0.79798 1.02717 1.23125 0.97296 0.96437 0.88349 0.91512 1.22439 0.99613 0.92098 1.01016 1.22404 0.98324 0.97922 0.98119 1.23192 0.98072 0.87418 1.01510 1.64752 1.27570 1.04474 1.26010 1.23689 0.96269 1.02627 0.91396 1.20321 0.75618 0.73387 0.90304 1.93165 1.89284 1.39891 1.94396 1.93219 1.59534 1.66821 1.96635 1.93237 1.57591 1.91842 1.72398 0.92813 0.95961 0.96027 0.92754 0.92715 0.77566 0.77772 0.91098 0.89927 0.90102 0.89702 0.91151 0.90432 0.89359 0.92746 0.89880 0.85655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.21 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C 0.14 3.01 5.61 -4.05 -0.02 2.99 16 11 N -0.74 -12.90 5.56 -65.23 -0.36 -13.27 16 12 C 0.70 11.97 8.57 -86.91 -0.74 11.22 16 13 O -0.59 -12.65 16.31 5.30 0.09 -12.57 16 14 N -0.76 -8.97 4.61 -65.22 -0.30 -9.27 16 15 C 0.15 1.54 5.38 -4.04 -0.02 1.52 16 16 C 0.06 0.39 2.53 -65.79 -0.17 0.23 16 17 H 0.07 0.40 8.02 -51.93 -0.42 -0.02 16 18 C -0.11 -0.64 6.50 -24.87 -0.16 -0.80 16 19 C -0.13 -0.67 6.93 -25.37 -0.18 -0.84 16 20 C 0.03 0.17 5.01 -2.76 -0.01 0.16 16 21 N -0.50 -4.08 4.92 -222.63 -1.09 -5.18 16 22 C -0.01 -0.07 4.44 -3.82 -0.02 -0.09 16 23 C 0.46 4.52 3.22 37.16 0.12 4.64 16 24 F -0.19 -1.75 14.29 2.25 0.03 -1.72 16 25 F -0.18 -1.94 17.32 2.25 0.04 -1.91 16 26 F -0.17 -2.08 17.23 2.25 0.04 -2.04 16 27 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.39 5.82 8.49 -40.82 -0.35 5.47 16 33 H 0.39 3.53 6.15 -40.82 -0.25 3.28 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.53 8.05 -51.93 -0.42 0.11 16 38 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 40 H 0.09 0.67 7.58 -51.93 -0.39 0.27 16 41 H 0.05 0.34 6.99 -51.93 -0.36 -0.02 16 42 H 0.08 0.47 7.98 -51.93 -0.41 0.05 16 43 H 0.13 1.06 5.10 -51.93 -0.26 0.80 16 LS Contribution 359.88 15.07 5.42 5.42 Total: -1.00 -33.17 359.88 -8.39 -41.56 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -6.21 Total: 2.02 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -1.76 Total: 5.94 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: -1.02 Total: -53.19 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.09 Total: -12.57 kcal Atomic # 9 Polarization: -5.78 SS G_CDS: 0.11 Total: -5.67 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.17 -8.39 -41.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921909089.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.085 kcal (2) G-P(sol) polarization free energy of solvation -33.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds