Wall clock time and date at job start Tue Mar 31 2020 14:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00025 * 2 1 4 4 H 1.48498 * 109.47126 * 240.00047 * 3 2 1 5 5 H 1.48503 * 109.47153 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46872 * 120.00130 * 3 2 1 7 7 C 1.37875 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00055 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00308 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47326 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47241 * 180.02562 * 10 9 7 12 12 C 1.34781 * 119.99885 * 180.02562 * 11 10 9 13 13 O 1.21578 * 120.00172 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99384 * 179.97438 * 12 11 10 15 15 C 1.46504 * 119.99694 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47384 * 187.26749 * 15 14 12 17 17 H 1.09002 * 110.59581 * 307.33494 * 16 15 14 18 18 C 1.54939 * 110.66805 * 184.32399 * 16 15 14 19 19 C 1.54601 * 102.91824 * 204.15283 * 18 16 15 20 20 C 1.53989 * 105.14001 * 21.96162 * 19 18 16 21 21 N 1.47894 * 107.06065 * 1.22002 * 20 19 18 22 22 C 1.46904 * 111.00137 * 214.15656 * 21 20 19 23 23 C 1.53002 * 109.47269 * 296.00547 * 22 21 20 24 24 F 1.39902 * 109.46881 * 60.66285 * 23 22 21 25 25 F 1.39897 * 109.47120 * 180.66334 * 23 22 21 26 26 F 1.39895 * 109.46859 * 300.66443 * 23 22 21 27 27 H 0.97000 * 120.00100 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.46930 * 60.00097 * 9 7 2 29 29 H 1.08997 * 109.47105 * 300.00317 * 9 7 2 30 30 H 1.09005 * 109.47124 * 59.99734 * 10 9 7 31 31 H 1.09007 * 109.46979 * 300.00059 * 10 9 7 32 32 H 0.97000 * 119.99707 * 359.97438 * 11 10 9 33 33 H 0.96989 * 120.00593 * 0.02562 * 14 12 11 34 34 H 1.08999 * 109.46904 * 67.26870 * 15 14 12 35 35 H 1.09000 * 109.47244 * 307.27282 * 15 14 12 36 36 H 1.08997 * 110.72125 * 85.79981 * 18 16 15 37 37 H 1.08995 * 110.72148 * 322.51043 * 18 16 15 38 38 H 1.08996 * 110.30759 * 263.03734 * 19 18 16 39 39 H 1.09008 * 110.38857 * 140.91748 * 19 18 16 40 40 H 1.09002 * 109.92173 * 120.57928 * 20 19 18 41 41 H 1.09003 * 109.91602 * 241.86716 * 20 19 18 42 42 H 1.09006 * 109.47112 * 56.00761 * 22 21 20 43 43 H 1.09001 * 109.47173 * 176.00487 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 6 2.1867 -6.0980 -0.0007 13 8 3.4024 -6.0980 -0.0003 14 7 1.5127 -7.2652 -0.0008 15 6 2.2452 -8.5340 -0.0009 16 6 1.2610 -9.6911 -0.1834 17 1 0.4566 -9.6295 0.5496 18 6 1.9927 -11.0529 -0.0794 19 6 1.0682 -12.0035 -0.8742 20 6 0.2520 -11.0866 -1.8039 21 7 0.7161 -9.7028 -1.5651 22 6 -0.3897 -8.7455 -1.7031 23 6 -0.9008 -8.7610 -3.1452 24 9 -1.3672 -10.0416 -3.4608 25 9 -1.9437 -7.8384 -3.2802 26 9 0.1413 -8.4171 -4.0129 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.8719 -3.6043 0.8895 31 1 2.8719 -3.6043 -0.8906 32 1 0.5427 -4.9308 -0.0011 33 1 0.5428 -7.2652 -0.0015 34 1 2.7707 -8.6501 0.9469 35 1 2.9658 -8.5374 -0.8187 36 1 2.0703 -11.3705 0.9604 37 1 2.9782 -10.9975 -0.5416 38 1 0.4056 -12.5413 -0.1961 39 1 1.6601 -12.7065 -1.4605 40 1 0.4261 -11.3624 -2.8440 41 1 -0.8091 -11.1683 -1.5680 42 1 -1.1985 -9.0248 -1.0279 43 1 -0.0372 -7.7447 -1.4533 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921909089.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:42 Heat of formation + Delta-G solvation = -206.561560 kcal Electronic energy + Delta-G solvation = -28149.711033 eV Core-core repulsion = 23620.669518 eV Total energy + Delta-G solvation = -4529.041515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.11743 -48.66995 -48.57037 -41.21957 -40.10150 -36.70854 -35.66275 -34.79344 -34.03461 -31.89293 -30.51766 -28.96671 -26.98589 -25.69531 -24.18836 -22.89770 -22.27661 -21.79157 -21.58445 -19.66477 -19.53916 -19.21203 -18.41828 -18.25305 -17.59213 -17.07885 -16.59034 -16.49502 -16.30401 -15.68368 -15.53244 -15.38228 -15.27470 -15.11101 -15.00145 -14.92377 -14.75534 -14.72438 -14.45061 -14.24935 -13.72304 -13.55232 -13.22271 -13.20340 -12.90098 -12.67294 -12.53023 -12.35450 -12.22738 -12.16790 -12.05624 -11.67143 -11.49262 -11.43831 -11.18541 -10.58993 -10.32838 -9.73132 -9.66431 -8.22888 -6.32998 1.42595 1.45054 1.52722 1.67062 1.75867 2.18230 2.42257 2.44151 2.77601 3.00506 3.12008 3.29514 3.32824 3.65296 3.71859 3.91660 4.07487 4.13721 4.18140 4.26892 4.48615 4.53359 4.55630 4.63646 4.72435 4.88131 4.88873 4.98607 5.06000 5.20486 5.27814 5.32331 5.46899 5.52529 5.61302 5.67521 5.71244 5.79834 5.99729 6.18629 6.80041 7.09862 7.36229 7.60111 8.88815 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.016629 B = 0.002721 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.432907 B =10289.110795 C =11552.247467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.161 3.839 11 N -0.734 5.734 12 C 0.698 3.302 13 O -0.637 6.637 14 N -0.735 5.735 15 C 0.151 3.849 16 C 0.064 3.936 17 H 0.090 0.910 18 C -0.110 4.110 19 C -0.123 4.123 20 C 0.025 3.975 21 N -0.524 5.524 22 C -0.006 4.006 23 C 0.454 3.546 24 F -0.183 7.183 25 F -0.188 7.188 26 F -0.188 7.188 27 H 0.266 0.734 28 H 0.008 0.992 29 H 0.010 0.990 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.406 0.594 33 H 0.404 0.596 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.114 0.886 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.616 -28.018 -0.701 28.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.036 3.964 11 N -0.389 5.389 12 C 0.398 3.602 13 O -0.519 6.519 14 N -0.394 5.394 15 C 0.027 3.973 16 C -0.043 4.043 17 H 0.108 0.892 18 C -0.149 4.149 19 C -0.161 4.161 20 C -0.102 4.102 21 N -0.249 5.249 22 C -0.136 4.136 23 C 0.400 3.600 24 F -0.165 7.165 25 F -0.169 7.169 26 F -0.170 7.170 27 H 0.074 0.926 28 H 0.026 0.974 29 H 0.028 0.972 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.241 0.759 33 H 0.242 0.758 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.131 0.869 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.281 -27.755 -1.115 27.971 hybrid contribution -1.299 1.059 -0.057 1.677 sum -4.580 -26.696 -1.173 27.111 Atomic orbital electron populations 1.70048 1.07506 1.28037 1.51005 1.25854 0.95791 1.03030 0.94423 0.85517 0.78324 0.78195 0.79129 1.19443 1.20589 1.19271 1.21452 0.93620 0.91964 1.51567 0.92310 1.19113 0.94211 0.91612 0.96335 1.21061 0.94606 0.81142 0.99566 1.45222 1.10302 1.04525 1.78847 1.16166 0.85178 0.81241 0.77664 1.90867 1.13762 1.87270 1.59961 1.45218 1.09832 1.04134 1.80171 1.21260 0.94226 0.79821 1.02020 1.23088 0.97220 0.95616 0.88399 0.89222 1.22459 0.99029 0.91201 1.02203 1.22390 0.98246 0.97518 0.97970 1.23195 0.98882 0.86866 1.01266 1.64678 1.28120 1.05290 1.26826 1.23690 0.97236 1.02330 0.90308 1.20671 0.75089 0.73222 0.91035 1.93167 1.89212 1.39607 1.94481 1.93202 1.59830 1.67154 1.96731 1.93198 1.58474 1.92042 1.73262 0.92553 0.97413 0.97176 0.93703 0.94058 0.75906 0.75782 0.90669 0.92329 0.88205 0.90701 0.89447 0.90179 0.90687 0.91844 0.86866 0.86447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.42 13.29 21.45 0.28 -54.13 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.96 43.83 29.54 68.60 2.03 45.85 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.55 -30.79 9.11 25.60 0.23 -30.55 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.02 1.25 5.09 29.85 0.15 1.41 16 10 C 0.16 7.02 5.61 86.38 0.48 7.50 16 11 N -0.73 -25.50 5.56 -478.54 -2.66 -28.16 16 12 C 0.70 23.65 8.57 179.05 1.53 25.18 16 13 O -0.64 -27.42 16.31 -3.96 -0.06 -27.49 16 14 N -0.73 -16.46 4.61 -478.54 -2.21 -18.66 16 15 C 0.15 2.88 5.38 86.38 0.47 3.35 16 16 C 0.06 0.75 2.53 45.26 0.11 0.87 16 17 H 0.09 0.70 8.02 -2.39 -0.02 0.68 16 18 C -0.11 -0.96 6.50 31.80 0.21 -0.76 16 19 C -0.12 -0.93 6.93 31.47 0.22 -0.71 16 20 C 0.03 0.28 5.01 86.45 0.43 0.72 16 21 N -0.52 -7.57 4.92 -858.25 -4.22 -11.79 16 22 C -0.01 -0.08 4.44 86.30 0.38 0.31 16 23 C 0.45 8.58 3.22 71.98 0.23 8.81 16 24 F -0.18 -3.26 14.29 44.97 0.64 -2.61 16 25 F -0.19 -3.91 17.32 44.97 0.78 -3.13 16 26 F -0.19 -4.64 17.23 44.97 0.77 -3.86 16 27 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 28 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.04 2.04 8.14 -2.38 -0.02 2.02 16 31 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.41 11.76 8.49 -92.71 -0.79 10.97 16 33 H 0.40 6.50 6.15 -92.72 -0.57 5.93 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.06 1.44 8.10 -2.39 -0.02 1.42 16 36 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.07 0.82 8.05 -2.39 -0.02 0.80 16 38 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 40 H 0.07 1.05 7.58 -2.39 -0.02 1.03 16 41 H 0.06 0.61 6.99 -2.39 -0.02 0.59 16 42 H 0.11 0.89 7.98 -2.38 -0.02 0.87 16 43 H 0.12 1.79 5.10 -2.39 -0.01 1.78 16 Total: -1.00 -72.00 359.88 -0.03 -72.04 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -0.31 Total: 14.92 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: 4.92 Total: 17.02 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -8.80 Total: -112.74 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.06 Total: -27.49 kcal Atomic # 9 Polarization: -11.80 SS G_CDS: 2.20 Total: -9.61 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -72.00 -0.03 -72.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921909089.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.525 kcal (2) G-P(sol) polarization free energy of solvation -72.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds