Wall clock time and date at job start Tue Mar 31 2020 14:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00515 * 2 1 4 4 H 1.48504 * 109.46955 * 270.00180 * 3 2 1 5 5 H 1.48499 * 109.46814 * 29.99915 * 3 2 1 6 6 H 1.48499 * 109.47390 * 149.99988 * 3 2 1 7 7 C 1.37883 * 119.99652 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99830 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00165 * 180.02562 * 7 2 1 10 10 C 1.52993 * 109.47446 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47350 * 179.97438 * 10 9 7 12 12 C 1.34784 * 120.00305 * 179.97438 * 11 10 9 13 13 O 1.21583 * 119.99517 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00153 * 180.02562 * 12 11 10 15 15 C 1.46499 * 119.99634 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.46729 * 173.19382 * 15 14 12 17 17 H 1.08999 * 110.33312 * 60.94378 * 16 15 14 18 18 C 1.54911 * 110.37149 * 183.31239 * 16 15 14 19 19 C 1.55141 * 101.65161 * 155.89979 * 18 16 15 20 20 C 1.54318 * 103.01860 * 324.34690 * 19 18 16 21 21 N 1.47445 * 107.23435 * 22.28203 * 20 19 18 22 22 C 1.46897 * 110.99508 * 123.26087 * 21 20 19 23 23 C 1.53000 * 109.47491 * 57.52402 * 22 21 20 24 24 F 1.39899 * 109.46965 * 53.46347 * 23 22 21 25 25 F 1.39899 * 109.47288 * 173.46290 * 23 22 21 26 26 F 1.39899 * 109.46954 * 293.46553 * 23 22 21 27 27 H 0.97001 * 119.99799 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47442 * 59.99454 * 9 7 2 29 29 H 1.09006 * 109.46705 * 299.99772 * 9 7 2 30 30 H 1.09001 * 109.47149 * 59.99872 * 10 9 7 31 31 H 1.08999 * 109.47277 * 299.99952 * 10 9 7 32 32 H 0.96997 * 120.00301 * 359.97438 * 11 10 9 33 33 H 0.97003 * 119.99727 * 359.72349 * 14 12 11 34 34 H 1.09001 * 109.47015 * 293.19048 * 15 14 12 35 35 H 1.08991 * 109.47254 * 53.19125 * 15 14 12 36 36 H 1.09000 * 110.98986 * 273.99144 * 18 16 15 37 37 H 1.08995 * 110.99063 * 37.80617 * 18 16 15 38 38 H 1.09000 * 110.70407 * 205.96541 * 19 18 16 39 39 H 1.09006 * 110.70617 * 82.73088 * 19 18 16 40 40 H 1.09008 * 109.88289 * 262.87834 * 20 19 18 41 41 H 1.08995 * 110.02303 * 141.77147 * 20 19 18 42 42 H 1.08998 * 109.46959 * 177.52666 * 22 21 20 43 43 H 1.09002 * 109.47293 * 297.52081 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1943 0.0000 10 6 4.0214 -2.6367 -0.0001 11 7 5.4863 -2.6368 -0.0001 12 6 6.1602 -3.8041 0.0003 13 8 5.5522 -4.8570 0.0012 14 7 7.5080 -3.8042 0.0008 15 6 8.2403 -5.0730 0.0006 16 6 9.7359 -4.7985 -0.1697 17 1 10.1058 -4.1904 0.6558 18 6 10.5222 -6.1304 -0.2561 19 6 11.7960 -5.6929 -1.0261 20 6 11.2592 -4.6357 -2.0138 21 7 9.9917 -4.1246 -1.4605 22 6 10.0410 -2.6661 -1.2923 23 6 10.3473 -2.0074 -2.6388 24 9 9.4306 -2.4550 -3.5961 25 9 10.2475 -0.6178 -2.5116 26 9 11.6438 -2.3471 -3.0399 27 1 -0.4850 0.8401 -0.0004 28 1 3.8745 -0.6810 0.8905 29 1 3.8751 -0.6799 -0.8895 30 1 3.6583 -3.1504 -0.8903 31 1 3.6577 -3.1508 0.8896 32 1 5.9714 -1.7969 -0.0005 33 1 7.9930 -2.9641 -0.0032 34 1 8.0711 -5.5902 0.9451 35 1 7.8890 -5.6952 -0.8224 36 1 10.7743 -6.5001 0.7377 37 1 9.9632 -6.8780 -0.8189 38 1 12.2306 -6.5362 -1.5628 39 1 12.5243 -5.2505 -0.3463 40 1 11.0811 -5.0939 -2.9867 41 1 11.9757 -3.8205 -2.1138 42 1 9.0788 -2.3101 -0.9242 43 1 10.8215 -2.4091 -0.5761 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921909092.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:45 Heat of formation + Delta-G solvation = -172.925058 kcal Electronic energy + Delta-G solvation = -28235.256086 eV Core-core repulsion = 23707.673159 eV Total energy + Delta-G solvation = -4527.582927 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.50141 -48.10289 -47.82178 -40.24081 -39.18682 -35.22388 -34.40184 -33.50294 -32.75209 -30.75555 -29.53699 -28.42010 -25.75562 -24.38753 -23.48919 -21.82890 -20.96517 -20.74807 -20.53709 -18.95556 -18.85750 -18.08556 -17.52888 -16.94690 -16.84812 -16.04367 -15.68384 -15.52068 -15.08038 -14.78120 -14.50257 -14.41009 -14.20692 -14.12058 -14.01347 -13.91111 -13.79447 -13.67795 -13.61392 -13.22789 -13.04736 -12.58043 -12.46561 -11.95464 -11.78771 -11.66141 -11.45077 -11.39548 -11.17236 -11.11672 -10.35782 -10.23910 -9.95406 -9.73967 -9.29704 -9.07210 -9.03328 -8.60206 -8.35525 -6.08534 -4.08290 2.27650 2.89222 3.00438 3.27351 3.34630 3.35573 3.35794 3.56242 3.59086 3.91206 4.09576 4.17927 4.37948 4.39993 4.49158 4.56000 4.65389 4.69146 4.83108 5.02041 5.21399 5.24514 5.31388 5.34097 5.49022 5.54654 5.71879 5.76899 6.11041 6.20035 6.25052 6.28592 6.53813 6.62700 6.84635 7.03913 7.27803 7.30711 7.70337 8.29958 8.48523 8.92929 8.96974 9.51725 11.04612 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.014967 B = 0.003015 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.377210 B = 9284.210931 C =10758.117090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.521 4.521 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.149 3.851 11 N -0.743 5.743 12 C 0.700 3.300 13 O -0.592 6.592 14 N -0.751 5.751 15 C 0.155 3.845 16 C 0.062 3.938 17 H 0.068 0.932 18 C -0.119 4.119 19 C -0.138 4.138 20 C 0.006 3.994 21 N -0.514 5.514 22 C 0.001 3.999 23 C 0.457 3.543 24 F -0.166 7.166 25 F -0.180 7.180 26 F -0.181 7.181 27 H 0.264 0.736 28 H 0.021 0.979 29 H 0.017 0.983 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.390 0.610 33 H 0.385 0.615 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.117 0.883 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.682 -7.386 -1.503 31.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.026 3.974 11 N -0.397 5.397 12 C 0.400 3.600 13 O -0.470 6.470 14 N -0.410 5.410 15 C 0.030 3.970 16 C -0.046 4.046 17 H 0.086 0.914 18 C -0.158 4.158 19 C -0.177 4.177 20 C -0.121 4.121 21 N -0.239 5.239 22 C -0.129 4.129 23 C 0.402 3.598 24 F -0.147 7.147 25 F -0.162 7.162 26 F -0.162 7.162 27 H 0.074 0.926 28 H 0.039 0.961 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.222 0.778 33 H 0.220 0.780 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.135 0.865 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 29.499 -8.342 -1.874 30.713 hybrid contribution 1.465 2.158 0.256 2.621 sum 30.964 -6.184 -1.618 31.617 Atomic orbital electron populations 1.69905 1.06289 1.27012 1.50539 1.25000 0.94757 0.99127 0.94418 0.86749 0.80227 0.83561 0.78503 1.20220 1.21320 1.19124 1.20925 0.88659 0.94908 1.51495 0.90568 1.19795 0.97926 0.91471 0.96750 1.21368 0.74725 0.99802 1.01510 1.45521 1.08970 1.06154 1.79022 1.16009 0.81187 0.84839 0.77973 1.90907 1.67628 1.30552 1.57961 1.45247 1.05085 1.08790 1.81887 1.21145 0.87695 0.85805 1.02363 1.22940 0.96094 0.95880 0.89645 0.91420 1.22685 0.95540 0.96047 1.01502 1.22758 0.97527 0.99232 0.98171 1.23559 0.89982 0.99169 0.99385 1.63564 1.33940 1.00861 1.25526 1.23564 1.05537 0.91632 0.92174 1.20354 0.74210 0.76774 0.88446 1.93257 1.66139 1.88806 1.66524 1.93220 1.95854 1.31005 1.96112 1.93038 1.39556 1.91380 1.92274 0.92576 0.96092 0.96459 0.92136 0.92144 0.77807 0.77986 0.91291 0.90326 0.89924 0.89610 0.90154 0.91272 0.89572 0.89606 0.86536 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 7 C -0.52 -14.74 9.66 -34.44 -0.33 -15.08 16 8 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 9 C -0.02 -0.50 4.15 -27.89 -0.12 -0.61 16 10 C 0.15 3.11 5.61 -4.05 -0.02 3.08 16 11 N -0.74 -12.50 5.56 -65.23 -0.36 -12.86 16 12 C 0.70 11.80 8.57 -86.91 -0.74 11.06 16 13 O -0.59 -12.54 16.32 5.29 0.09 -12.45 16 14 N -0.75 -8.80 5.36 -65.23 -0.35 -9.15 16 15 C 0.16 1.54 5.40 -4.04 -0.02 1.52 16 16 C 0.06 0.42 2.69 -66.19 -0.18 0.24 16 17 H 0.07 0.37 7.75 -51.93 -0.40 -0.03 16 18 C -0.12 -0.63 6.50 -24.59 -0.16 -0.79 16 19 C -0.14 -0.66 6.94 -24.91 -0.17 -0.83 16 20 C 0.01 0.04 5.91 -2.83 -0.02 0.02 16 21 N -0.51 -3.87 4.65 -223.38 -1.04 -4.91 16 22 C 0.00 0.01 4.69 -3.83 -0.02 -0.01 16 23 C 0.46 3.94 3.08 37.16 0.11 4.05 16 24 F -0.17 -1.86 17.12 2.25 0.04 -1.82 16 25 F -0.18 -1.69 17.32 2.25 0.04 -1.65 16 26 F -0.18 -1.49 13.95 2.25 0.03 -1.46 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 29 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.39 5.39 8.49 -40.82 -0.35 5.05 16 33 H 0.38 3.46 5.45 -40.82 -0.22 3.24 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.94 8.11 -51.93 -0.42 0.52 16 36 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.51 8.06 -51.93 -0.42 0.09 16 38 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.09 0.63 8.14 -51.92 -0.42 0.20 16 41 H 0.09 0.53 4.88 -51.93 -0.25 0.28 16 42 H 0.12 0.76 5.26 -51.93 -0.27 0.49 16 43 H 0.08 0.37 8.05 -51.93 -0.42 -0.05 16 LS Contribution 355.23 15.07 5.35 5.35 Total: -1.00 -34.22 355.23 -7.93 -42.16 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.07 Total: 2.52 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -1.77 Total: 4.54 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -0.98 Total: -53.71 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.45 kcal Atomic # 9 Polarization: -5.04 SS G_CDS: 0.11 Total: -4.94 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.22 -7.93 -42.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921909092.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.769 kcal (2) G-P(sol) polarization free energy of solvation -34.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds