Wall clock time and date at job start Tue Mar 31 2020 14:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00077 * 2 1 4 4 C 1.53001 * 109.47475 * 180.02562 * 3 2 1 5 5 N 1.46899 * 109.47256 * 67.67671 * 4 3 2 6 6 C 1.46900 * 110.99733 * 58.15625 * 5 4 3 7 7 C 1.50698 * 109.47613 * 66.04253 * 6 5 4 8 8 C 1.38255 * 119.92772 * 269.73224 * 7 6 5 9 9 C 1.38239 * 120.13615 * 179.69214 * 8 7 6 10 10 C 1.38545 * 120.03320 * 0.62773 * 9 8 7 11 11 C 1.39265 * 119.82642 * 359.64415 * 10 9 8 12 12 C 1.38241 * 119.92735 * 89.99730 * 7 6 5 13 13 O 1.36499 * 108.63791 * 179.97438 * 11 10 9 14 14 C 1.43985 * 105.48489 * 342.72624 * 13 11 10 15 15 O 1.36504 * 131.53089 * 179.64727 * 10 9 8 16 16 C 1.46898 * 111.00047 * 294.19732 * 5 4 3 17 17 C 1.52995 * 109.47331 * 300.11765 * 16 5 4 18 18 H 1.09004 * 109.46958 * 58.12254 * 17 16 5 19 19 O 1.42894 * 109.47102 * 298.12378 * 17 16 5 20 20 C 1.50697 * 109.46897 * 178.11875 * 17 16 5 21 21 H 1.07994 * 120.00378 * 0.02562 * 20 17 16 22 22 C 1.37881 * 119.99601 * 180.02562 * 20 17 16 23 23 N 1.31509 * 120.00396 * 0.02562 * 22 20 17 24 24 Si 1.86802 * 119.99758 * 180.02562 * 22 20 17 25 25 H 1.48501 * 109.47150 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47450 * 120.00208 * 24 22 20 27 27 H 1.48505 * 109.46858 * 240.00190 * 24 22 20 28 28 H 1.09004 * 109.46660 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47092 * 299.99997 * 1 2 3 30 30 H 1.08998 * 109.46980 * 60.00583 * 1 2 3 31 31 H 1.09004 * 109.47356 * 59.99307 * 3 2 1 32 32 H 1.09006 * 109.47039 * 299.99621 * 3 2 1 33 33 H 1.08997 * 109.46474 * 307.67748 * 4 3 2 34 34 H 1.08997 * 109.47087 * 187.68256 * 4 3 2 35 35 H 1.09000 * 109.46933 * 186.04783 * 6 5 4 36 36 H 1.09009 * 109.46976 * 306.04010 * 6 5 4 37 37 H 1.08000 * 119.92894 * 359.96618 * 8 7 6 38 38 H 1.08007 * 119.98077 * 180.27135 * 9 8 7 39 39 H 1.08004 * 119.98266 * 0.02562 * 12 7 6 40 40 H 1.09002 * 110.56925 * 268.55060 * 14 13 11 41 41 H 1.09007 * 110.57419 * 145.68264 * 14 13 11 42 42 H 1.09001 * 109.47131 * 60.12210 * 16 5 4 43 43 H 1.09001 * 109.46743 * 180.11585 * 16 5 4 44 44 H 0.96708 * 113.99993 * 299.99332 * 19 17 16 45 45 H 0.96999 * 120.00204 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9816 0.6218 -1.2821 6 6 3.5389 1.4571 -2.4065 7 6 4.2308 2.7944 -2.3419 8 6 3.6506 3.8382 -1.6454 9 6 4.2846 5.0648 -1.5780 10 6 5.4976 5.2546 -2.2199 11 6 6.0793 4.2048 -2.9262 12 6 5.4416 2.9762 -2.9838 13 8 7.2568 4.6393 -3.4625 14 6 7.1910 6.0771 -3.4206 15 8 6.3111 6.3469 -2.3131 16 6 3.5164 -0.7626 -1.4395 17 6 4.0753 -1.6208 -0.3029 18 1 3.7567 -1.2082 0.6544 19 8 5.5027 -1.6263 -0.3679 20 6 3.5607 -3.0307 -0.4384 21 1 2.9014 -3.2890 -1.2538 22 6 3.9318 -3.9911 0.4788 23 7 4.7343 -3.6766 1.4721 24 14 3.2945 -5.7389 0.3105 25 1 2.4144 -5.8323 -0.8819 26 1 4.4402 -6.6708 0.1549 27 1 2.5217 -6.1031 1.5253 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8483 0.5297 0.8125 34 1 3.9781 2.1712 0.1367 35 1 3.7886 0.9638 -3.3459 36 1 2.4602 1.6030 -2.3482 37 1 2.7023 3.6937 -1.1492 38 1 3.8312 5.8773 -1.0295 39 1 5.8902 2.1603 -3.5312 40 1 6.7717 6.4684 -4.3475 41 1 8.1784 6.5006 -3.2369 42 1 2.4270 -0.7854 -1.4101 43 1 3.8623 -1.1556 -2.3955 44 1 5.8575 -1.9814 -1.1945 45 1 4.9950 -4.3521 2.1175 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929617899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:04 Heat of formation + Delta-G solvation = -106.500962 kcal Electronic energy + Delta-G solvation = -28313.361084 eV Core-core repulsion = 24298.222511 eV Total energy + Delta-G solvation = -4015.138573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.22766 -39.27625 -37.74010 -36.37318 -36.25970 -34.65803 -31.93335 -31.26516 -30.40529 -29.45910 -27.90430 -26.30855 -26.03073 -25.12471 -23.71846 -22.99212 -22.57931 -20.99904 -19.35374 -18.03715 -17.60792 -17.47473 -16.91972 -16.38020 -16.27785 -16.05055 -15.01597 -14.66260 -14.59573 -14.52812 -14.44808 -14.07716 -13.90623 -13.76588 -13.42593 -13.23542 -13.06952 -12.86508 -12.63849 -12.14392 -12.01392 -11.65953 -11.51189 -11.35381 -11.07726 -11.02342 -10.89909 -10.83397 -10.64150 -10.56797 -10.44260 -9.93591 -9.22710 -8.88190 -8.76521 -8.40816 -8.11154 -7.92135 -7.45089 -5.86881 -4.02225 1.07205 1.19894 2.65792 3.32332 3.33447 3.41480 3.44381 3.49793 4.09973 4.43269 4.46062 4.47876 4.63938 4.70791 4.91042 4.95764 5.07860 5.13716 5.29363 5.35664 5.41168 5.44396 5.50309 5.55107 5.63921 5.70327 5.78670 5.92549 5.96594 5.98326 6.05286 6.17821 6.31005 6.32829 6.52167 6.55648 6.61006 6.79273 7.05480 7.12386 7.47643 7.63416 7.72450 7.93312 8.10074 8.38374 9.01425 9.60965 9.78546 11.17599 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018300 B = 0.003220 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.685769 B = 8694.332775 C = 9694.457725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.018 3.982 4 C 0.050 3.950 5 N -0.514 5.514 6 C 0.085 3.915 7 C -0.052 4.052 8 C -0.109 4.109 9 C -0.100 4.100 10 C 0.021 3.979 11 C 0.031 3.969 12 C -0.077 4.077 13 O -0.309 6.309 14 C 0.214 3.786 15 O -0.313 6.313 16 C 0.023 3.977 17 C 0.240 3.760 18 H 0.061 0.939 19 O -0.560 6.560 20 C -0.560 4.560 21 H 0.052 0.948 22 C 0.078 3.922 23 N -0.861 5.861 24 Si 0.884 3.116 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.285 1.285 28 H 0.085 0.915 29 H 0.034 0.966 30 H 0.031 0.969 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.045 0.955 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.137 0.863 40 H 0.081 0.919 41 H 0.128 0.872 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.340 0.660 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.520 18.964 -8.766 21.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.275 6.275 3 C -0.060 4.060 4 C -0.079 4.079 5 N -0.237 5.237 6 C -0.042 4.042 7 C -0.053 4.053 8 C -0.128 4.128 9 C -0.118 4.118 10 C -0.023 4.023 11 C -0.013 4.013 12 C -0.096 4.096 13 O -0.225 6.225 14 C 0.102 3.898 15 O -0.229 6.229 16 C -0.104 4.104 17 C 0.183 3.817 18 H 0.078 0.922 19 O -0.361 6.361 20 C -0.598 4.598 21 H 0.070 0.930 22 C -0.127 4.127 23 N -0.497 5.497 24 Si 0.712 3.288 25 H -0.199 1.199 26 H -0.211 1.211 27 H -0.211 1.211 28 H 0.104 0.896 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.063 0.937 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.155 0.845 40 H 0.098 0.902 41 H 0.146 0.854 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.183 0.817 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.652 19.064 -7.969 20.832 hybrid contribution -1.306 -0.775 -0.666 1.658 sum -3.958 18.289 -8.636 20.609 Atomic orbital electron populations 1.22717 0.82725 1.02687 0.98796 1.88321 1.18346 1.26231 1.94633 1.23439 0.97186 0.86017 0.99398 1.22412 0.89510 1.01254 0.94686 1.62270 1.58862 1.02730 0.99826 1.21112 0.96388 0.90066 0.96672 1.19615 0.94090 0.95517 0.96045 1.20855 1.00547 0.91514 0.99867 1.19978 0.91483 0.98648 1.01718 1.19763 0.94101 0.86181 1.02258 1.19778 0.86315 0.95930 0.99290 1.19962 0.94006 0.94052 1.01589 1.87373 1.34044 1.21271 1.79849 1.25571 0.95856 0.79097 0.89313 1.87337 1.46099 1.38746 1.50733 1.23344 0.99849 0.85822 1.01356 1.19314 0.78358 0.91570 0.92490 0.92165 1.86567 1.22956 1.85908 1.40702 1.21652 1.30737 0.95401 1.12053 0.92983 1.24999 0.94365 0.98417 0.94918 1.70090 1.32881 1.33250 1.13524 0.86701 0.78717 0.85495 0.77897 1.19869 1.21065 1.21117 0.89615 0.94748 0.95021 0.93669 0.93703 0.88306 0.90061 0.90053 0.93741 0.84944 0.84998 0.84491 0.90192 0.85416 0.91915 0.92884 0.81714 0.93320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.36 -6.19 7.28 -35.23 -0.26 -6.45 16 3 C 0.02 0.26 5.36 37.16 0.20 0.46 16 4 C 0.05 0.83 5.18 -3.82 -0.02 0.81 16 5 N -0.51 -8.96 4.65 -236.07 -1.10 -10.06 16 6 C 0.09 1.18 4.85 -4.98 -0.02 1.16 16 7 C -0.05 -0.67 4.87 -104.62 -0.51 -1.18 16 8 C -0.11 -1.24 8.02 -39.57 -0.32 -1.55 16 9 C -0.10 -1.13 10.06 -39.47 -0.40 -1.52 16 10 C 0.02 0.27 7.15 -39.09 -0.28 -0.01 16 11 C 0.03 0.42 7.15 -39.09 -0.28 0.14 16 12 C -0.08 -1.03 9.71 -39.47 -0.38 -1.42 16 13 O -0.31 -3.96 11.40 -45.69 -0.52 -4.48 16 14 C 0.21 1.95 8.89 101.05 0.90 2.85 16 15 O -0.31 -3.76 11.40 -45.70 -0.52 -4.29 16 16 C 0.02 0.46 4.01 -3.83 -0.02 0.45 16 17 C 0.24 6.09 2.45 -27.89 -0.07 6.02 16 18 H 0.06 1.70 6.11 -51.93 -0.32 1.38 16 19 O -0.56 -14.83 12.63 -35.23 -0.45 -15.28 16 20 C -0.56 -15.49 8.76 -34.44 -0.30 -15.79 16 21 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 22 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 23 N -0.86 -25.90 12.84 55.43 0.71 -25.19 16 24 Si 0.88 21.48 29.54 -169.99 -5.02 16.46 16 25 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 28 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.56 4.95 -51.93 -0.26 0.30 16 33 H 0.10 2.01 5.97 -51.93 -0.31 1.70 16 34 H 0.08 1.22 6.30 -51.93 -0.33 0.89 16 35 H 0.08 1.09 7.96 -51.93 -0.41 0.67 16 36 H 0.04 0.58 5.74 -51.92 -0.30 0.28 16 37 H 0.13 1.27 6.70 -52.49 -0.35 0.92 16 38 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 39 H 0.14 1.77 8.06 -52.48 -0.42 1.35 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.13 0.77 8.14 -51.92 -0.42 0.35 16 42 H 0.06 1.30 5.27 -51.93 -0.27 1.02 16 43 H 0.05 1.07 8.06 -51.93 -0.42 0.65 16 44 H 0.34 8.17 9.04 45.56 0.41 8.59 16 45 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 LS Contribution 361.04 15.07 5.44 5.44 Total: -1.00 -33.43 361.04 -7.67 -41.10 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -5.48 Total: 8.73 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -0.48 Total: -5.98 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: -0.39 Total: -35.25 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -1.74 Total: -30.49 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.43 -7.67 -41.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929617899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.405 kcal (2) G-P(sol) polarization free energy of solvation -33.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds