Wall clock time and date at job start Tue Mar 31 2020 14:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00077 * 2 1 4 4 C 1.53001 * 109.47475 * 180.02562 * 3 2 1 5 5 N 1.46899 * 109.47256 * 67.67671 * 4 3 2 6 6 C 1.46900 * 110.99733 * 58.15625 * 5 4 3 7 7 C 1.50698 * 109.47613 * 66.04253 * 6 5 4 8 8 C 1.38255 * 119.92772 * 269.73224 * 7 6 5 9 9 C 1.38239 * 120.13615 * 179.69214 * 8 7 6 10 10 C 1.38545 * 120.03320 * 0.62773 * 9 8 7 11 11 C 1.39265 * 119.82642 * 359.64415 * 10 9 8 12 12 C 1.38241 * 119.92735 * 89.99730 * 7 6 5 13 13 O 1.36499 * 108.63791 * 179.97438 * 11 10 9 14 14 C 1.43985 * 105.48489 * 342.72624 * 13 11 10 15 15 O 1.36504 * 131.53089 * 179.64727 * 10 9 8 16 16 C 1.46898 * 111.00047 * 294.19732 * 5 4 3 17 17 C 1.52995 * 109.47331 * 300.11765 * 16 5 4 18 18 H 1.09004 * 109.46958 * 58.12254 * 17 16 5 19 19 O 1.42894 * 109.47102 * 298.12378 * 17 16 5 20 20 C 1.50697 * 109.46897 * 178.11875 * 17 16 5 21 21 H 1.07994 * 120.00378 * 0.02562 * 20 17 16 22 22 C 1.37881 * 119.99601 * 180.02562 * 20 17 16 23 23 N 1.31509 * 120.00396 * 0.02562 * 22 20 17 24 24 Si 1.86802 * 119.99758 * 180.02562 * 22 20 17 25 25 H 1.48501 * 109.47150 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47450 * 120.00208 * 24 22 20 27 27 H 1.48505 * 109.46858 * 240.00190 * 24 22 20 28 28 H 1.09004 * 109.46660 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47092 * 299.99997 * 1 2 3 30 30 H 1.08998 * 109.46980 * 60.00583 * 1 2 3 31 31 H 1.09004 * 109.47356 * 59.99307 * 3 2 1 32 32 H 1.09006 * 109.47039 * 299.99621 * 3 2 1 33 33 H 1.08997 * 109.46474 * 307.67748 * 4 3 2 34 34 H 1.08997 * 109.47087 * 187.68256 * 4 3 2 35 35 H 1.09000 * 109.46933 * 186.04783 * 6 5 4 36 36 H 1.09009 * 109.46976 * 306.04010 * 6 5 4 37 37 H 1.08000 * 119.92894 * 359.96618 * 8 7 6 38 38 H 1.08007 * 119.98077 * 180.27135 * 9 8 7 39 39 H 1.08004 * 119.98266 * 0.02562 * 12 7 6 40 40 H 1.09002 * 110.56925 * 268.55060 * 14 13 11 41 41 H 1.09007 * 110.57419 * 145.68264 * 14 13 11 42 42 H 1.09001 * 109.47131 * 60.12210 * 16 5 4 43 43 H 1.09001 * 109.46743 * 180.11585 * 16 5 4 44 44 H 0.96708 * 113.99993 * 299.99332 * 19 17 16 45 45 H 0.96999 * 120.00204 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9816 0.6218 -1.2821 6 6 3.5389 1.4571 -2.4065 7 6 4.2308 2.7944 -2.3419 8 6 3.6506 3.8382 -1.6454 9 6 4.2846 5.0648 -1.5780 10 6 5.4976 5.2546 -2.2199 11 6 6.0793 4.2048 -2.9262 12 6 5.4416 2.9762 -2.9838 13 8 7.2568 4.6393 -3.4625 14 6 7.1910 6.0771 -3.4206 15 8 6.3111 6.3469 -2.3131 16 6 3.5164 -0.7626 -1.4395 17 6 4.0753 -1.6208 -0.3029 18 1 3.7567 -1.2082 0.6544 19 8 5.5027 -1.6263 -0.3679 20 6 3.5607 -3.0307 -0.4384 21 1 2.9014 -3.2890 -1.2538 22 6 3.9318 -3.9911 0.4788 23 7 4.7343 -3.6766 1.4721 24 14 3.2945 -5.7389 0.3105 25 1 2.4144 -5.8323 -0.8819 26 1 4.4402 -6.6708 0.1549 27 1 2.5217 -6.1031 1.5253 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8483 0.5297 0.8125 34 1 3.9781 2.1712 0.1367 35 1 3.7886 0.9638 -3.3459 36 1 2.4602 1.6030 -2.3482 37 1 2.7023 3.6937 -1.1492 38 1 3.8312 5.8773 -1.0295 39 1 5.8902 2.1603 -3.5312 40 1 6.7717 6.4684 -4.3475 41 1 8.1784 6.5006 -3.2369 42 1 2.4270 -0.7854 -1.4101 43 1 3.8623 -1.1556 -2.3955 44 1 5.8575 -1.9814 -1.1945 45 1 4.9950 -4.3521 2.1175 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929617899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:03 Heat of formation + Delta-G solvation = -132.431793 kcal Electronic energy + Delta-G solvation = -28314.485529 eV Core-core repulsion = 24298.222511 eV Total energy + Delta-G solvation = -4016.263018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.09645 -40.47988 -38.80105 -37.80661 -37.25393 -36.32723 -34.11104 -32.31385 -31.45154 -30.81031 -29.44659 -27.39092 -27.22569 -26.35068 -25.16870 -23.92125 -23.84286 -22.38840 -20.87519 -19.02024 -18.89651 -18.47381 -18.34548 -17.60623 -17.34784 -17.07280 -16.60083 -16.34496 -16.09791 -15.82138 -15.48676 -15.42029 -14.97199 -14.83565 -14.78261 -14.68620 -14.32344 -13.96402 -13.65764 -13.48375 -13.24765 -12.96231 -12.89571 -12.79172 -12.70869 -12.62391 -12.41336 -12.18655 -12.02774 -11.95330 -11.78680 -11.64211 -10.82175 -10.58679 -10.35234 -9.96493 -9.79051 -9.06095 -8.79613 -8.03389 -6.26007 0.12182 0.26955 1.41420 1.42561 1.54479 1.82595 2.43001 2.52192 2.56885 2.98372 3.22716 3.37597 3.52554 3.82494 3.84926 3.98459 4.10560 4.10874 4.23670 4.29832 4.32538 4.41265 4.49959 4.53265 4.55309 4.55903 4.65011 4.66579 4.73182 4.87380 4.91898 5.01040 5.05960 5.12387 5.19246 5.28853 5.42168 5.44237 5.58707 5.72455 5.97623 6.13679 6.16601 6.34629 6.35964 6.46967 6.88219 7.45477 7.75129 9.01324 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018300 B = 0.003220 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.685769 B = 8694.332775 C = 9694.457725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.399 6.399 3 C 0.023 3.977 4 C 0.054 3.946 5 N -0.529 5.529 6 C 0.091 3.909 7 C -0.060 4.060 8 C -0.102 4.102 9 C -0.098 4.098 10 C 0.012 3.988 11 C 0.013 3.987 12 C -0.091 4.091 13 O -0.330 6.330 14 C 0.205 3.795 15 O -0.324 6.324 16 C 0.044 3.956 17 C 0.244 3.756 18 H 0.026 0.974 19 O -0.578 6.578 20 C -0.570 4.570 21 H 0.054 0.946 22 C 0.023 3.977 23 N -0.903 5.903 24 Si 0.954 3.046 25 H -0.263 1.263 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.077 0.923 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.156 0.844 38 H 0.158 0.842 39 H 0.132 0.868 40 H 0.105 0.895 41 H 0.158 0.842 42 H 0.064 0.936 43 H 0.053 0.947 44 H 0.348 0.652 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.019 20.370 -9.767 23.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.318 6.318 3 C -0.055 4.055 4 C -0.075 4.075 5 N -0.251 5.251 6 C -0.036 4.036 7 C -0.061 4.061 8 C -0.120 4.120 9 C -0.116 4.116 10 C -0.032 4.032 11 C -0.031 4.031 12 C -0.111 4.111 13 O -0.247 6.247 14 C 0.094 3.906 15 O -0.241 6.241 16 C -0.083 4.083 17 C 0.186 3.814 18 H 0.044 0.956 19 O -0.381 6.381 20 C -0.609 4.609 21 H 0.072 0.928 22 C -0.178 4.178 23 N -0.541 5.541 24 Si 0.780 3.220 25 H -0.187 1.187 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.174 0.826 38 H 0.176 0.824 39 H 0.150 0.850 40 H 0.123 0.877 41 H 0.175 0.825 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.192 0.808 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.164 20.489 -8.993 22.760 hybrid contribution -0.786 -1.096 -0.371 1.399 sum -4.950 19.393 -9.363 22.097 Atomic orbital electron populations 1.22845 0.80854 1.02842 1.00662 1.88242 1.20557 1.28047 1.94980 1.23426 0.95132 0.85431 1.01517 1.22285 0.91693 1.00682 0.92810 1.62120 1.59736 1.01882 1.01404 1.21085 0.97366 0.89960 0.95139 1.19536 0.94117 0.95453 0.96996 1.21092 1.01122 0.90918 0.98877 1.20312 0.90888 0.99329 1.01084 1.20053 0.94670 0.86222 1.02275 1.19938 0.86850 0.96297 1.00030 1.20042 0.94599 0.94204 1.02219 1.87332 1.34009 1.23325 1.80001 1.26090 0.97253 0.77527 0.89712 1.87308 1.46362 1.38572 1.51859 1.22859 0.99428 0.87128 0.98855 1.19139 0.77785 0.91543 0.92899 0.95625 1.86514 1.23912 1.86110 1.41560 1.22044 1.30320 0.96746 1.11772 0.92794 1.25848 0.94579 1.02843 0.94545 1.70241 1.34596 1.34664 1.14584 0.85594 0.78177 0.80091 0.78158 1.18704 1.20770 1.20775 0.90454 0.93224 0.92695 0.91797 0.91004 0.92953 0.88330 0.89820 0.92058 0.82646 0.82441 0.85039 0.87740 0.82512 0.91824 0.92890 0.80793 0.93408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 11.01 113.37 1.25 1.85 16 2 O -0.40 -13.52 7.28 -148.98 -1.08 -14.61 16 3 C 0.02 0.61 5.36 71.98 0.39 1.00 16 4 C 0.05 1.77 5.18 86.30 0.45 2.22 16 5 N -0.53 -18.27 4.65 -900.80 -4.19 -22.46 16 6 C 0.09 2.39 4.85 85.56 0.42 2.80 16 7 C -0.06 -1.46 4.87 -19.86 -0.10 -1.55 16 8 C -0.10 -2.02 8.02 22.27 0.18 -1.84 16 9 C -0.10 -1.95 10.06 22.34 0.22 -1.73 16 10 C 0.01 0.29 7.15 22.59 0.16 0.45 16 11 C 0.01 0.34 7.15 22.59 0.16 0.51 16 12 C -0.09 -2.42 9.71 22.34 0.22 -2.21 16 13 O -0.33 -8.26 11.40 -76.04 -0.87 -9.13 16 14 C 0.20 3.39 8.89 113.37 1.01 4.40 16 15 O -0.32 -7.26 11.40 -76.10 -0.87 -8.13 16 16 C 0.04 1.82 4.01 86.30 0.35 2.17 16 17 C 0.24 12.74 2.45 29.85 0.07 12.81 16 18 H 0.03 1.54 6.11 -2.38 -0.01 1.52 16 19 O -0.58 -31.70 12.63 -148.98 -1.88 -33.58 16 20 C -0.57 -32.05 8.76 25.60 0.22 -31.82 16 21 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 22 C 0.02 1.33 5.40 84.66 0.46 1.79 16 23 N -0.90 -55.73 12.84 21.45 0.28 -55.45 16 24 Si 0.95 44.53 29.54 68.60 2.03 46.56 16 25 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 27 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 28 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.47 8.14 -2.38 -0.02 1.46 16 32 H 0.07 1.54 4.95 -2.38 -0.01 1.52 16 33 H 0.05 2.23 5.97 -2.39 -0.01 2.21 16 34 H 0.10 2.84 6.30 -2.39 -0.02 2.83 16 35 H 0.08 2.14 7.96 -2.39 -0.02 2.12 16 36 H 0.06 1.40 5.74 -2.38 -0.01 1.39 16 37 H 0.16 2.33 6.70 -2.91 -0.02 2.31 16 38 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 39 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 40 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.16 1.55 8.14 -2.38 -0.02 1.53 16 42 H 0.06 2.62 5.27 -2.39 -0.01 2.61 16 43 H 0.05 2.14 8.06 -2.39 -0.02 2.12 16 44 H 0.35 17.27 9.04 -74.05 -0.67 16.60 16 45 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -74.19 361.04 -0.78 -74.97 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: 0.36 Total: 31.00 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 5.45 Total: -9.16 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -3.91 Total: -77.92 kcal Atomic # 8 Polarization: -60.75 SS G_CDS: -4.70 Total: -65.45 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -74.19 -0.78 -74.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929617899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.464 kcal (2) G-P(sol) polarization free energy of solvation -74.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds