Wall clock time and date at job start Tue Mar 31 2020 13:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45204 * 109.47118 * 2 1 4 4 C 1.34227 * 117.00307 * 183.50651 * 3 2 1 5 5 O 1.20831 * 119.99447 * 2.79601 * 4 3 2 6 6 C 1.50698 * 120.00370 * 182.79438 * 4 3 2 7 7 N 1.46893 * 109.47125 * 185.54224 * 6 4 3 8 8 C 1.46900 * 111.00099 * 74.83111 * 7 6 4 9 9 C 1.50702 * 109.47245 * 57.37232 * 8 7 6 10 10 C 1.38168 * 120.02461 * 265.05998 * 9 8 7 11 11 C 1.38247 * 120.05293 * 180.25053 * 10 9 8 12 12 C 1.38286 * 120.10976 * 359.45004 * 11 10 9 13 13 C 1.38122 * 120.05764 * 0.55142 * 12 11 10 14 14 C 1.38708 * 120.02713 * 85.03672 * 9 8 7 15 15 O 1.35895 * 120.06136 * 0.02562 * 14 9 8 16 16 C 1.46904 * 110.99851 * 198.78339 * 7 6 4 17 17 C 1.53002 * 109.47081 * 170.00123 * 16 7 6 18 18 H 1.08999 * 109.47501 * 60.00099 * 17 16 7 19 19 O 1.42898 * 109.47214 * 299.99583 * 17 16 7 20 20 C 1.50704 * 109.47166 * 180.02562 * 17 16 7 21 21 H 1.08000 * 119.99519 * 359.97438 * 20 17 16 22 22 C 1.37872 * 119.99980 * 180.02562 * 20 17 16 23 23 N 1.31513 * 119.99654 * 180.02562 * 22 20 17 24 24 Si 1.86791 * 120.00245 * 359.97438 * 22 20 17 25 25 H 1.48502 * 109.46948 * 90.00335 * 24 22 20 26 26 H 1.48496 * 109.47403 * 210.00351 * 24 22 20 27 27 H 1.48503 * 109.47548 * 330.00501 * 24 22 20 28 28 H 1.09001 * 109.46513 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46955 * 300.00753 * 1 2 3 30 30 H 1.09003 * 109.46665 * 60.01049 * 1 2 3 31 31 H 1.08993 * 109.47476 * 239.99188 * 2 1 3 32 32 H 1.09003 * 109.46665 * 119.98951 * 2 1 3 33 33 H 1.08999 * 109.46520 * 65.54062 * 6 4 3 34 34 H 1.08999 * 109.46953 * 305.54655 * 6 4 3 35 35 H 1.08997 * 109.47092 * 297.37044 * 8 7 6 36 36 H 1.09002 * 109.46863 * 177.37220 * 8 7 6 37 37 H 1.08005 * 119.97312 * 359.97438 * 10 9 8 38 38 H 1.07999 * 119.94159 * 179.70800 * 11 10 9 39 39 H 1.07998 * 119.97272 * 180.29634 * 12 11 10 40 40 H 1.07999 * 120.02873 * 179.74181 * 13 12 11 41 41 H 0.96697 * 114.00429 * 89.99415 * 15 14 9 42 42 H 1.09003 * 109.47344 * 290.00124 * 16 7 6 43 43 H 1.09000 * 109.47202 * 50.00265 * 16 7 6 44 44 H 0.96703 * 114.00428 * 300.00613 * 19 17 16 45 45 H 0.97007 * 120.00285 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3426 1.5457 -0.0731 5 8 4.0738 0.5903 -0.1860 6 6 3.9224 2.9354 -0.0145 7 7 5.3715 2.8717 -0.2463 8 6 5.6676 2.6314 -1.6650 9 6 5.0393 3.7171 -2.5002 10 6 3.7942 3.5209 -3.0661 11 6 3.2196 4.5144 -3.8367 12 6 3.8840 5.7111 -4.0337 13 6 5.1289 5.9122 -3.4702 14 6 5.7103 4.9144 -2.7011 15 8 6.9351 5.1098 -2.1456 16 6 6.0351 4.0924 0.2306 17 6 7.5517 3.8920 0.2042 18 1 7.8724 3.6788 -0.8155 19 8 7.9023 2.7968 1.0525 20 6 8.2325 5.1441 0.6940 21 1 7.6425 5.9975 0.9937 22 6 9.6086 5.2003 0.7585 23 7 10.2026 6.2928 1.1865 24 14 10.6291 3.7245 0.2394 25 1 10.9410 3.8231 -1.2091 26 1 11.8937 3.6987 1.0174 27 1 9.8640 2.4781 0.4972 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.8934 -0.5139 -0.8898 32 1 1.8933 -0.5137 0.8901 33 1 3.7301 3.3681 0.9673 34 1 3.4585 3.5553 -0.7818 35 1 5.2624 1.6641 -1.9620 36 1 6.7471 2.6352 -1.8165 37 1 3.2714 2.5888 -2.9100 38 1 2.2483 4.3573 -4.2821 39 1 3.4309 6.4876 -4.6322 40 1 5.6492 6.8454 -3.6279 41 1 7.6709 4.8313 -2.7077 42 1 5.7677 4.9279 -0.4165 43 1 5.7145 4.3055 1.2503 44 1 7.6466 2.9179 1.9772 45 1 11.1708 6.3324 1.2322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930764923.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:32 Heat of formation + Delta-G solvation = -128.263090 kcal Electronic energy + Delta-G solvation = -29000.896973 eV Core-core repulsion = 24984.814723 eV Total energy + Delta-G solvation = -4016.082250 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.64048 -39.87590 -37.41425 -36.50977 -36.21321 -35.01205 -32.08801 -31.97007 -31.31099 -29.75861 -29.27040 -27.41913 -25.84110 -23.80554 -22.72829 -22.44268 -21.52950 -20.54164 -19.74420 -18.00412 -17.67298 -17.12886 -16.67059 -16.35652 -15.90834 -15.80974 -15.44287 -14.88407 -14.67419 -14.46936 -14.12656 -13.87486 -13.66335 -13.45988 -13.39081 -13.09302 -12.87022 -12.63781 -12.22072 -12.12908 -11.95038 -11.71169 -11.67407 -11.59078 -11.39806 -11.07846 -10.88352 -10.84285 -10.58047 -10.32189 -10.22987 -10.09877 -9.76245 -8.91193 -8.79892 -8.50045 -8.45442 -8.15639 -7.81662 -6.00425 -4.07419 1.30140 1.34968 2.37676 2.61712 3.43288 3.55316 3.67271 3.85113 4.35421 4.48874 4.63532 4.72863 4.73801 4.85794 4.88040 4.92479 5.06061 5.08655 5.27008 5.28832 5.35666 5.45059 5.50168 5.51705 5.56036 5.69175 5.74260 5.83961 5.99522 6.07006 6.11191 6.23180 6.38794 6.44525 6.47464 6.50769 6.61638 6.78362 6.91986 7.22738 7.36909 7.61699 7.79567 7.96659 8.04353 8.44052 8.98817 9.26405 9.65823 11.10963 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.012208 B = 0.004769 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.051764 B = 5869.761101 C = 7558.963337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.367 6.367 4 C 0.459 3.541 5 O -0.484 6.484 6 C 0.052 3.948 7 N -0.499 5.499 8 C 0.096 3.904 9 C -0.155 4.155 10 C -0.098 4.098 11 C -0.138 4.138 12 C -0.106 4.106 13 C -0.149 4.149 14 C 0.129 3.871 15 O -0.463 6.463 16 C 0.040 3.960 17 C 0.212 3.788 18 H 0.060 0.940 19 O -0.576 6.576 20 C -0.541 4.541 21 H 0.068 0.932 22 C 0.081 3.919 23 N -0.900 5.900 24 Si 0.866 3.134 25 H -0.291 1.291 26 H -0.299 1.299 27 H -0.216 1.216 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.128 0.872 41 H 0.385 0.615 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.352 0.648 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.409 -6.985 -8.877 21.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.284 6.284 4 C 0.300 3.700 5 O -0.369 6.369 6 C -0.077 4.077 7 N -0.222 5.222 8 C -0.032 4.032 9 C -0.157 4.157 10 C -0.117 4.117 11 C -0.156 4.156 12 C -0.124 4.124 13 C -0.167 4.167 14 C 0.083 3.917 15 O -0.273 6.273 16 C -0.087 4.087 17 C 0.154 3.846 18 H 0.078 0.922 19 O -0.381 6.381 20 C -0.579 4.579 21 H 0.086 0.914 22 C -0.122 4.122 23 N -0.538 5.538 24 Si 0.693 3.307 25 H -0.218 1.218 26 H -0.226 1.226 27 H -0.138 1.138 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.129 0.871 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.146 0.854 41 H 0.242 0.758 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.197 0.803 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.932 -7.676 -8.662 21.343 hybrid contribution 0.327 0.223 -0.611 0.728 sum -17.605 -7.453 -9.273 21.248 Atomic orbital electron populations 1.21798 0.92873 1.02754 1.03430 1.22951 0.95094 0.80670 1.02509 1.86503 1.25359 1.32019 1.84560 1.23869 0.80015 0.93073 0.73007 1.90667 1.60174 1.42778 1.43258 1.21727 0.91360 0.89981 1.04641 1.62118 1.04777 1.39367 1.15925 1.21230 1.01796 0.94841 0.85319 1.21162 0.96678 0.97138 1.00771 1.20929 0.94626 0.99004 0.97143 1.21061 1.00195 0.94103 1.00225 1.21001 0.94665 0.97234 0.99516 1.21541 0.96925 0.99978 0.98301 1.18486 0.88553 0.91900 0.92778 1.85331 1.12407 1.86055 1.43520 1.23048 0.98340 0.88312 0.98949 1.19686 0.87485 0.85940 0.91439 0.92242 1.86687 1.83356 1.46266 1.21756 1.21390 0.91989 0.99435 1.45056 0.91425 1.24923 0.98013 0.95660 0.93561 1.69967 1.09666 1.27671 1.46501 0.87124 0.78957 0.87088 0.77520 1.21777 1.22625 1.13797 0.90440 0.91495 0.91611 0.91411 0.91366 0.87116 0.90399 0.90268 0.88814 0.86580 0.86238 0.86061 0.85390 0.75811 0.92574 0.91907 0.80284 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.29 37.16 0.38 -0.68 16 2 C 0.06 0.63 6.24 37.16 0.23 0.86 16 3 O -0.37 -4.65 10.22 -39.25 -0.40 -5.05 16 4 C 0.46 6.83 7.65 36.00 0.28 7.11 16 5 O -0.48 -8.60 15.01 -18.75 -0.28 -8.88 16 6 C 0.05 0.77 5.34 -4.98 -0.03 0.74 16 7 N -0.50 -8.72 4.12 -237.52 -0.98 -9.70 16 8 C 0.10 1.57 4.97 -4.98 -0.02 1.54 16 9 C -0.15 -2.25 4.07 -104.47 -0.42 -2.67 16 10 C -0.10 -1.23 7.91 -39.60 -0.31 -1.54 16 11 C -0.14 -1.53 10.04 -39.56 -0.40 -1.93 16 12 C -0.11 -1.20 10.04 -39.61 -0.40 -1.60 16 13 C -0.15 -1.98 9.99 -39.43 -0.39 -2.37 16 14 C 0.13 1.93 5.43 -39.22 -0.21 1.72 16 15 O -0.46 -7.87 7.98 -19.41 -0.15 -8.02 16 16 C 0.04 0.78 3.98 -3.82 -0.02 0.76 16 17 C 0.21 4.82 1.27 -27.88 -0.04 4.78 16 18 H 0.06 1.36 4.26 -51.93 -0.22 1.14 16 19 O -0.58 -13.48 10.01 -35.23 -0.35 -13.84 16 20 C -0.54 -14.64 9.16 -34.44 -0.32 -14.95 16 21 H 0.07 2.02 7.99 -52.49 -0.42 1.60 16 22 C 0.08 2.31 5.47 -17.82 -0.10 2.22 16 23 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 24 Si 0.87 21.76 26.99 -169.99 -4.59 17.17 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 27 H -0.22 -5.40 5.31 56.52 0.30 -5.10 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.69 8.03 -51.93 -0.42 0.27 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.11 1.50 7.75 -51.93 -0.40 1.10 16 34 H 0.08 1.08 5.32 -51.93 -0.28 0.80 16 35 H 0.08 1.29 6.81 -51.93 -0.35 0.94 16 36 H 0.09 1.66 5.83 -51.93 -0.30 1.36 16 37 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 38 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 40 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.38 5.35 8.99 45.56 0.41 5.76 16 42 H 0.06 1.13 4.88 -51.93 -0.25 0.88 16 43 H 0.06 1.23 7.84 -51.93 -0.41 0.82 16 44 H 0.35 7.53 9.04 45.56 0.41 7.94 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 LS Contribution 359.48 15.07 5.42 5.42 Total: -1.00 -34.01 359.48 -7.18 -41.19 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -4.85 Total: 14.38 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -1.77 Total: -6.02 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: -0.21 Total: -36.34 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -1.19 Total: -35.80 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.59 Total: 17.17 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.01 -7.18 -41.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930764923.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.070 kcal (2) G-P(sol) polarization free energy of solvation -34.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds