Wall clock time and date at job start Tue Mar 31 2020 13:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45204 * 109.47118 * 2 1 4 4 C 1.34227 * 117.00307 * 183.50651 * 3 2 1 5 5 O 1.20831 * 119.99447 * 2.79601 * 4 3 2 6 6 C 1.50698 * 120.00370 * 182.79438 * 4 3 2 7 7 N 1.46893 * 109.47125 * 185.54224 * 6 4 3 8 8 C 1.46900 * 111.00099 * 74.83111 * 7 6 4 9 9 C 1.50702 * 109.47245 * 57.37232 * 8 7 6 10 10 C 1.38168 * 120.02461 * 265.05998 * 9 8 7 11 11 C 1.38247 * 120.05293 * 180.25053 * 10 9 8 12 12 C 1.38286 * 120.10976 * 359.45004 * 11 10 9 13 13 C 1.38122 * 120.05764 * 0.55142 * 12 11 10 14 14 C 1.38708 * 120.02713 * 85.03672 * 9 8 7 15 15 O 1.35895 * 120.06136 * 0.02562 * 14 9 8 16 16 C 1.46904 * 110.99851 * 198.78339 * 7 6 4 17 17 C 1.53002 * 109.47081 * 170.00123 * 16 7 6 18 18 H 1.08999 * 109.47501 * 60.00099 * 17 16 7 19 19 O 1.42898 * 109.47214 * 299.99583 * 17 16 7 20 20 C 1.50704 * 109.47166 * 180.02562 * 17 16 7 21 21 H 1.08000 * 119.99519 * 359.97438 * 20 17 16 22 22 C 1.37872 * 119.99980 * 180.02562 * 20 17 16 23 23 N 1.31513 * 119.99654 * 180.02562 * 22 20 17 24 24 Si 1.86791 * 120.00245 * 359.97438 * 22 20 17 25 25 H 1.48502 * 109.46948 * 90.00335 * 24 22 20 26 26 H 1.48496 * 109.47403 * 210.00351 * 24 22 20 27 27 H 1.48503 * 109.47548 * 330.00501 * 24 22 20 28 28 H 1.09001 * 109.46513 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46955 * 300.00753 * 1 2 3 30 30 H 1.09003 * 109.46665 * 60.01049 * 1 2 3 31 31 H 1.08993 * 109.47476 * 239.99188 * 2 1 3 32 32 H 1.09003 * 109.46665 * 119.98951 * 2 1 3 33 33 H 1.08999 * 109.46520 * 65.54062 * 6 4 3 34 34 H 1.08999 * 109.46953 * 305.54655 * 6 4 3 35 35 H 1.08997 * 109.47092 * 297.37044 * 8 7 6 36 36 H 1.09002 * 109.46863 * 177.37220 * 8 7 6 37 37 H 1.08005 * 119.97312 * 359.97438 * 10 9 8 38 38 H 1.07999 * 119.94159 * 179.70800 * 11 10 9 39 39 H 1.07998 * 119.97272 * 180.29634 * 12 11 10 40 40 H 1.07999 * 120.02873 * 179.74181 * 13 12 11 41 41 H 0.96697 * 114.00429 * 89.99415 * 15 14 9 42 42 H 1.09003 * 109.47344 * 290.00124 * 16 7 6 43 43 H 1.09000 * 109.47202 * 50.00265 * 16 7 6 44 44 H 0.96703 * 114.00428 * 300.00613 * 19 17 16 45 45 H 0.97007 * 120.00285 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3426 1.5457 -0.0731 5 8 4.0738 0.5903 -0.1860 6 6 3.9224 2.9354 -0.0145 7 7 5.3715 2.8717 -0.2463 8 6 5.6676 2.6314 -1.6650 9 6 5.0393 3.7171 -2.5002 10 6 3.7942 3.5209 -3.0661 11 6 3.2196 4.5144 -3.8367 12 6 3.8840 5.7111 -4.0337 13 6 5.1289 5.9122 -3.4702 14 6 5.7103 4.9144 -2.7011 15 8 6.9351 5.1098 -2.1456 16 6 6.0351 4.0924 0.2306 17 6 7.5517 3.8920 0.2042 18 1 7.8724 3.6788 -0.8155 19 8 7.9023 2.7968 1.0525 20 6 8.2325 5.1441 0.6940 21 1 7.6425 5.9975 0.9937 22 6 9.6086 5.2003 0.7585 23 7 10.2026 6.2928 1.1865 24 14 10.6291 3.7245 0.2394 25 1 10.9410 3.8231 -1.2091 26 1 11.8937 3.6987 1.0174 27 1 9.8640 2.4781 0.4972 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.8934 -0.5139 -0.8898 32 1 1.8933 -0.5137 0.8901 33 1 3.7301 3.3681 0.9673 34 1 3.4585 3.5553 -0.7818 35 1 5.2624 1.6641 -1.9620 36 1 6.7471 2.6352 -1.8165 37 1 3.2714 2.5888 -2.9100 38 1 2.2483 4.3573 -4.2821 39 1 3.4309 6.4876 -4.6322 40 1 5.6492 6.8454 -3.6279 41 1 7.6709 4.8313 -2.7077 42 1 5.7677 4.9279 -0.4165 43 1 5.7145 4.3055 1.2503 44 1 7.6466 2.9179 1.9772 45 1 11.1708 6.3324 1.2322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930764923.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:31 Heat of formation + Delta-G solvation = -154.083782 kcal Electronic energy + Delta-G solvation = -29002.016642 eV Core-core repulsion = 24984.814723 eV Total energy + Delta-G solvation = -4017.201919 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.79937 -40.97570 -38.76399 -37.74627 -37.41923 -36.60060 -34.27321 -32.76369 -32.39932 -30.90484 -30.74722 -28.80543 -27.42074 -25.09697 -23.74655 -23.51251 -22.69974 -21.92594 -21.13970 -19.29850 -19.16833 -18.65595 -17.76804 -17.50773 -17.17239 -16.91297 -16.70035 -16.47495 -16.16134 -15.76974 -15.64898 -15.21560 -14.94768 -14.77020 -14.68855 -14.41685 -14.04950 -13.59724 -13.46662 -13.18079 -13.11434 -13.04511 -12.86169 -12.79888 -12.68836 -12.56666 -12.46716 -12.33713 -12.10431 -11.74394 -11.49856 -11.40774 -11.30196 -10.83400 -10.69055 -10.04674 -9.83181 -9.49885 -9.22154 -8.23341 -6.32376 0.30138 0.36040 1.21562 1.41793 1.49538 1.57219 1.81814 2.51810 2.68061 3.07037 3.16250 3.41341 3.74487 3.80694 3.89178 4.02201 4.10639 4.12380 4.15052 4.22659 4.28205 4.33362 4.37940 4.45944 4.56313 4.61222 4.72696 4.85164 4.91222 4.94969 4.97052 5.04858 5.16737 5.19247 5.43870 5.47381 5.52298 5.54306 5.61477 5.64783 5.94436 6.03464 6.05364 6.23557 6.77224 6.84044 6.93178 7.34666 7.50401 8.91737 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.012208 B = 0.004769 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.051764 B = 5869.761101 C = 7558.963337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.053 3.947 3 O -0.363 6.363 4 C 0.469 3.531 5 O -0.517 6.517 6 C 0.053 3.947 7 N -0.512 5.512 8 C 0.102 3.898 9 C -0.165 4.165 10 C -0.099 4.099 11 C -0.129 4.129 12 C -0.098 4.098 13 C -0.160 4.160 14 C 0.107 3.893 15 O -0.490 6.490 16 C 0.057 3.943 17 C 0.221 3.779 18 H 0.063 0.937 19 O -0.583 6.583 20 C -0.529 4.529 21 H 0.029 0.971 22 C 0.029 3.971 23 N -0.947 5.947 24 Si 0.932 3.068 25 H -0.281 1.281 26 H -0.306 1.306 27 H -0.213 1.213 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.122 0.878 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.126 0.874 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.130 0.870 41 H 0.391 0.609 42 H 0.050 0.950 43 H 0.059 0.941 44 H 0.360 0.640 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.048 -8.145 -10.337 24.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.020 4.020 3 O -0.280 6.280 4 C 0.311 3.689 5 O -0.405 6.405 6 C -0.076 4.076 7 N -0.234 5.234 8 C -0.025 4.025 9 C -0.167 4.167 10 C -0.117 4.117 11 C -0.146 4.146 12 C -0.116 4.116 13 C -0.178 4.178 14 C 0.062 3.938 15 O -0.301 6.301 16 C -0.070 4.070 17 C 0.164 3.836 18 H 0.080 0.920 19 O -0.389 6.389 20 C -0.568 4.568 21 H 0.048 0.952 22 C -0.169 4.169 23 N -0.588 5.588 24 Si 0.758 3.242 25 H -0.207 1.207 26 H -0.233 1.233 27 H -0.135 1.135 28 H 0.117 0.883 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.140 0.860 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.144 0.856 38 H 0.171 0.829 39 H 0.170 0.830 40 H 0.148 0.852 41 H 0.249 0.751 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.207 0.793 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.617 -8.841 -10.133 24.615 hybrid contribution 0.989 0.599 -0.182 1.170 sum -19.628 -8.242 -10.315 23.655 Atomic orbital electron populations 1.21816 0.90206 1.04324 1.03776 1.23273 0.97127 0.79242 1.02396 1.86496 1.23833 1.33731 1.83901 1.23744 0.80550 0.92490 0.72090 1.90659 1.61095 1.43705 1.45021 1.21739 0.89668 0.90480 1.05689 1.61963 1.06622 1.37886 1.16967 1.21056 1.00744 0.95579 0.85159 1.20975 0.97674 0.96421 1.01672 1.21072 0.93812 0.99892 0.96958 1.21433 1.01159 0.93168 0.98887 1.21365 0.93565 0.98091 0.98603 1.21681 0.97991 0.99674 0.98494 1.18676 0.88069 0.92899 0.94135 1.85277 1.13651 1.86366 1.44826 1.22624 0.96355 0.89225 0.98768 1.19494 0.89418 0.83700 0.91021 0.91957 1.86635 1.83689 1.46006 1.22540 1.21610 0.91736 0.99835 1.43570 0.95242 1.25680 0.99341 0.97948 0.93895 1.70096 1.09938 1.29865 1.48875 0.86096 0.76895 0.83829 0.77427 1.20684 1.23345 1.13476 0.88254 0.91276 0.91099 0.91488 0.91661 0.86004 0.89112 0.90316 0.90830 0.85628 0.82939 0.83033 0.85219 0.75144 0.93171 0.92266 0.79296 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 10.29 71.98 0.74 -0.89 16 2 C 0.05 0.97 6.24 71.98 0.45 1.42 16 3 O -0.36 -8.48 10.22 -51.39 -0.53 -9.01 16 4 C 0.47 13.31 7.65 71.24 0.54 13.85 16 5 O -0.52 -17.98 15.01 21.95 0.33 -17.65 16 6 C 0.05 1.49 5.34 85.56 0.46 1.95 16 7 N -0.51 -17.64 4.12 -905.37 -3.73 -21.37 16 8 C 0.10 3.31 4.97 85.56 0.43 3.74 16 9 C -0.16 -4.64 4.07 -19.77 -0.08 -4.72 16 10 C -0.10 -2.23 7.91 22.26 0.18 -2.05 16 11 C -0.13 -2.38 10.04 22.28 0.22 -2.15 16 12 C -0.10 -1.91 10.04 22.25 0.22 -1.69 16 13 C -0.16 -4.04 9.99 22.37 0.22 -3.82 16 14 C 0.11 3.20 5.43 22.51 0.12 3.33 16 15 O -0.49 -17.12 7.98 -92.36 -0.74 -17.86 16 16 C 0.06 2.25 3.98 86.30 0.34 2.60 16 17 C 0.22 10.14 1.27 29.85 0.04 10.18 16 18 H 0.06 2.88 4.26 -2.39 -0.01 2.87 16 19 O -0.58 -27.05 10.01 -148.98 -1.49 -28.54 16 20 C -0.53 -29.39 9.16 25.60 0.23 -29.15 16 21 H 0.03 1.83 7.99 -2.91 -0.02 1.80 16 22 C 0.03 1.71 5.47 84.65 0.46 2.17 16 23 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16 24 Si 0.93 45.83 26.99 68.60 1.85 47.68 16 25 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 26 H -0.31 -15.30 7.11 99.48 0.71 -14.60 16 27 H -0.21 -10.27 5.31 99.48 0.53 -9.74 16 28 H 0.10 0.71 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 1.25 8.03 -2.39 -0.02 1.23 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.12 3.13 7.75 -2.39 -0.02 3.12 16 34 H 0.09 2.34 5.32 -2.39 -0.01 2.33 16 35 H 0.08 2.54 6.81 -2.39 -0.02 2.52 16 36 H 0.07 2.65 5.83 -2.39 -0.01 2.63 16 37 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 38 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 39 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 40 H 0.13 3.15 8.06 -2.91 -0.02 3.12 16 41 H 0.39 11.41 8.99 -74.06 -0.67 10.75 16 42 H 0.05 2.05 4.88 -2.39 -0.01 2.04 16 43 H 0.06 2.33 7.84 -2.39 -0.02 2.32 16 44 H 0.36 15.30 9.04 -74.06 -0.67 14.63 16 45 H 0.26 15.55 8.31 -92.70 -0.77 14.78 16 Total: -1.00 -73.99 359.48 0.10 -73.89 By element: Atomic # 1 Polarization: 37.56 SS G_CDS: -0.48 Total: 37.08 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 4.58 Total: -5.24 kcal Atomic # 7 Polarization: -76.92 SS G_CDS: -3.43 Total: -80.36 kcal Atomic # 8 Polarization: -70.63 SS G_CDS: -2.42 Total: -73.05 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.85 Total: 47.68 kcal Total: -73.99 0.10 -73.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930764923.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.190 kcal (2) G-P(sol) polarization free energy of solvation -73.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds