Wall clock time and date at job start Tue Mar 31 2020 14:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86807 * 119.99713 * 2 1 4 4 H 1.48497 * 109.46970 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46917 * 300.00217 * 3 2 1 6 6 H 1.48494 * 109.47042 * 60.00193 * 3 2 1 7 7 C 1.38816 * 120.00425 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99844 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99600 * 359.97438 * 7 2 1 10 10 C 1.46600 * 125.31376 * 180.02562 * 9 7 2 11 11 C 1.53388 * 108.10101 * 178.68659 * 10 9 7 12 12 H 1.09008 * 110.25714 * 225.73546 * 11 10 9 13 13 C 1.51152 * 111.44643 * 102.99522 * 11 10 9 14 14 C 1.51716 * 111.88656 * 156.41706 * 13 11 10 15 15 N 1.43513 * 113.68459 * 83.81190 * 14 13 11 16 16 C 1.34776 * 123.09756 * 122.49691 * 15 14 13 17 17 O 1.21282 * 119.99873 * 179.15090 * 16 15 14 18 18 C 1.50703 * 120.00546 * 359.14710 * 16 15 14 19 19 H 1.08995 * 115.54394 * 34.27976 * 18 16 15 20 20 C 1.52999 * 117.49864 * 248.60792 * 18 16 15 21 21 C 1.52993 * 117.49921 * 179.97438 * 18 16 15 22 22 H 1.09002 * 117.50388 * 359.97438 * 21 18 16 23 23 N 1.46508 * 117.49790 * 214.97978 * 21 18 16 24 24 O 1.21795 * 119.99863 * 120.00075 * 23 21 18 25 25 O 1.21798 * 120.00070 * 300.00364 * 23 21 18 26 26 C 1.49538 * 114.34540 * 301.70983 * 15 14 13 27 27 C 1.52916 * 105.45782 * 71.06898 * 26 15 14 28 28 C 1.51840 * 111.82293 * 258.79617 * 27 26 15 29 29 H 1.08996 * 110.53309 * 298.04563 * 28 27 26 30 30 C 1.46662 * 125.31748 * 0.03948 * 9 7 2 31 31 H 0.96997 * 120.00353 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.74422 * 59.01847 * 10 9 7 33 33 H 1.08998 * 109.74221 * 298.36174 * 10 9 7 34 34 H 1.08998 * 108.99599 * 277.03880 * 13 11 10 35 35 H 1.09003 * 108.99641 * 35.79247 * 13 11 10 36 36 H 1.08998 * 108.53044 * 203.85107 * 14 13 11 37 37 H 1.09002 * 108.53114 * 321.38405 * 14 13 11 38 38 H 1.08993 * 117.50017 * 0.02562 * 20 18 16 39 39 H 1.09004 * 117.49184 * 144.99299 * 20 18 16 40 40 H 1.09002 * 110.26635 * 312.04327 * 26 15 14 41 41 H 1.09000 * 110.26267 * 190.08974 * 26 15 14 42 42 H 1.09004 * 109.00936 * 19.39850 * 27 26 15 43 43 H 1.08994 * 109.01528 * 138.26778 * 27 26 15 44 44 H 1.09003 * 109.96745 * 78.89956 * 30 9 7 45 45 H 1.09003 * 109.97158 * 317.63452 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 1.9379 -3.7201 -0.0005 11 6 0.8126 -4.7619 0.0329 12 1 1.0357 -5.5350 0.7682 13 6 0.5934 -5.3825 -1.3278 14 6 -0.0567 -6.7497 -1.2277 15 7 -1.4863 -6.7011 -1.1123 16 6 -2.3159 -7.3146 -1.9794 17 8 -3.5164 -7.2495 -1.8195 18 6 -1.7520 -8.0815 -3.1478 19 1 -0.8067 -8.5916 -2.9629 20 6 -1.9837 -7.5082 -4.5472 21 6 -2.7456 -8.7561 -4.0957 22 1 -3.8071 -8.6456 -3.8742 23 7 -2.3535 -10.0384 -4.6859 24 8 -3.0257 -11.0334 -4.4822 25 8 -1.3553 -10.1094 -5.3802 26 6 -1.9837 -5.9255 0.0654 27 6 -1.6915 -4.4599 -0.2589 28 6 -0.4519 -3.9589 0.4608 29 1 -0.5905 -4.0089 1.5408 30 6 -0.1347 -2.5240 -0.0008 31 1 -0.4850 0.8400 0.0004 32 1 2.5715 -3.8341 0.8790 33 1 2.5345 -3.8511 -0.9033 34 1 -0.0474 -4.7272 -1.9177 35 1 1.5551 -5.4828 -1.8311 36 1 0.1874 -7.3159 -2.1265 37 1 0.3647 -7.2716 -0.3686 38 1 -2.5436 -6.5761 -4.6228 39 1 -1.1906 -7.6410 -5.2831 40 1 -1.4511 -6.2260 0.9677 41 1 -3.0556 -6.0776 0.1922 42 1 -1.5439 -4.3568 -1.3340 43 1 -2.5451 -3.8526 0.0419 44 1 -0.5234 -2.3622 -1.0063 45 1 -0.5757 -1.8047 0.6893 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946589041.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:11 Heat of formation + Delta-G solvation = 21.734609 kcal Electronic energy + Delta-G solvation = -28147.150653 eV Core-core repulsion = 24169.865543 eV Total energy + Delta-G solvation = -3977.285110 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -42.65494 -40.82984 -39.10296 -37.25907 -36.59215 -36.10998 -33.28564 -32.46904 -30.81115 -28.63349 -27.67678 -27.49288 -25.22652 -24.03612 -23.19764 -22.73075 -22.25736 -20.22243 -19.74937 -19.40370 -18.79405 -18.43425 -17.73007 -17.40025 -16.97481 -16.40499 -15.79914 -15.16952 -14.78869 -14.54991 -14.30627 -13.96605 -13.68910 -13.30401 -13.09335 -13.00600 -12.75242 -12.41424 -12.08376 -11.87658 -11.82457 -11.75968 -11.57992 -11.40539 -11.36837 -11.31179 -11.20852 -11.05181 -10.86513 -10.77570 -10.36694 -10.08391 -10.04546 -9.83584 -9.75727 -9.54999 -8.91486 -8.65739 -6.87736 -5.73357 -3.12260 0.08792 1.15538 1.86055 2.46789 2.76885 3.30185 3.34882 3.40795 3.43070 3.63196 3.90834 4.11925 4.43774 4.54092 4.65689 4.86137 4.90136 4.94232 5.01211 5.15208 5.18146 5.24649 5.41862 5.45564 5.51371 5.62634 5.66610 5.83430 5.94491 5.97046 6.03607 6.17033 6.23587 6.28674 6.45611 6.51689 6.57504 6.68781 6.92441 7.13097 7.27307 7.47568 7.59792 7.66858 7.79744 8.28780 9.18007 9.78860 10.42089 11.32585 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.024637 B = 0.002650 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.239556 B =10563.877447 C =10781.196384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.225 4.225 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.143 3.857 11 C -0.093 4.093 12 H 0.066 0.934 13 C -0.128 4.128 14 C 0.104 3.896 15 N -0.595 5.595 16 C 0.552 3.448 17 O -0.534 6.534 18 C -0.146 4.146 19 H 0.147 0.853 20 C -0.104 4.104 21 C -0.063 4.063 22 H 0.186 0.814 23 N 0.011 4.989 24 O -0.153 6.153 25 O -0.161 6.161 26 C 0.113 3.887 27 C -0.126 4.126 28 C -0.110 4.110 29 H 0.068 0.932 30 C 0.170 3.830 31 H 0.251 0.749 32 H 0.020 0.980 33 H 0.021 0.979 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.014 0.986 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.199 -16.414 -4.902 17.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.743 3.257 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.017 3.983 11 C -0.112 4.112 12 H 0.084 0.916 13 C -0.166 4.166 14 C -0.020 4.020 15 N -0.327 5.327 16 C 0.338 3.662 17 O -0.412 6.412 18 C -0.168 4.168 19 H 0.165 0.835 20 C -0.142 4.142 21 C -0.163 4.163 22 H 0.203 0.797 23 N 0.533 4.467 24 O -0.372 6.372 25 O -0.379 6.379 26 C -0.007 4.007 27 C -0.164 4.164 28 C -0.129 4.129 29 H 0.087 0.913 30 C 0.045 3.955 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.154 0.846 39 H 0.159 0.841 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.032 0.968 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.078 -15.486 -4.529 16.642 hybrid contribution 0.647 0.574 -0.070 0.867 sum -3.432 -14.912 -4.599 15.978 Atomic orbital electron populations 1.69891 1.04869 1.24744 1.57492 1.24796 0.95734 0.97737 1.02306 0.86026 0.78697 0.83677 0.77269 1.20516 1.21759 1.21731 1.19111 0.90533 0.82458 1.43249 0.90443 1.44205 1.01809 0.99922 1.86879 1.21101 0.93589 0.85858 0.97787 1.21794 0.96752 0.97109 0.95518 0.91578 1.21475 1.01148 0.95104 0.98832 1.20911 0.79812 0.98812 1.02458 1.47876 1.07053 1.51160 1.26567 1.18909 0.86131 0.79101 0.82048 1.90752 1.14319 1.61858 1.74239 1.22806 0.99398 1.01836 0.92746 0.83549 1.23690 1.01516 0.94497 0.94512 1.25032 1.02558 0.82533 1.06161 0.79692 1.43804 0.99915 1.03681 0.99297 1.94586 1.51867 1.26651 1.64088 1.94551 1.15792 1.92353 1.35176 1.22428 1.00795 0.90929 0.86561 1.21854 0.98839 0.93861 1.01837 1.22453 0.92420 0.98948 0.99097 0.91347 1.21415 0.84534 0.90260 0.99310 0.93810 0.96168 0.96151 0.90359 0.90691 0.91039 0.91224 0.84559 0.84122 0.89922 0.89255 0.90772 0.91176 0.96814 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.19 10.16 55.49 0.56 -25.63 16 2 C -0.01 -0.28 5.48 -17.43 -0.10 -0.37 16 3 Si 0.91 21.59 29.55 -169.99 -5.02 16.57 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.23 -6.08 10.25 -15.06 -0.15 -6.23 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -14.61 3.38 -172.15 -0.58 -15.20 16 10 C 0.14 2.73 6.83 -3.79 -0.03 2.70 16 11 C -0.09 -1.36 2.76 -89.86 -0.25 -1.61 16 12 H 0.07 0.84 7.67 -51.92 -0.40 0.44 16 13 C -0.13 -1.53 4.78 -28.31 -0.14 -1.66 16 14 C 0.10 0.95 5.71 -6.27 -0.04 0.92 16 15 N -0.59 -6.32 2.61 -174.32 -0.45 -6.78 16 16 C 0.55 6.10 7.55 -10.98 -0.08 6.02 16 17 O -0.53 -7.58 15.94 5.56 0.09 -7.50 16 18 C -0.15 -1.19 5.00 -91.77 -0.46 -1.65 16 19 H 0.15 0.99 6.82 -51.93 -0.35 0.63 16 20 C -0.10 -0.69 9.72 -26.72 -0.26 -0.95 16 21 C -0.06 -0.54 6.43 -67.92 -0.44 -0.98 16 22 H 0.19 1.60 7.67 -51.93 -0.40 1.20 16 23 N 0.01 0.12 4.33 -4.88 -0.02 0.10 16 24 O -0.15 -1.89 19.24 -29.46 -0.57 -2.46 16 25 O -0.16 -1.80 18.28 -29.46 -0.54 -2.34 16 26 C 0.11 1.30 6.13 -2.39 -0.01 1.29 16 27 C -0.13 -1.75 4.50 -27.36 -0.12 -1.87 16 28 C -0.11 -1.80 2.94 -89.18 -0.26 -2.06 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 30 C 0.17 3.84 5.13 -3.41 -0.02 3.82 16 31 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.02 0.39 7.43 -51.93 -0.39 0.00 16 34 H 0.08 1.10 5.84 -51.93 -0.30 0.80 16 35 H 0.07 0.85 7.56 -51.93 -0.39 0.45 16 36 H 0.07 0.50 5.63 -51.93 -0.29 0.21 16 37 H 0.07 0.58 7.67 -51.93 -0.40 0.18 16 38 H 0.14 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.14 0.75 7.63 -51.93 -0.40 0.36 16 40 H 0.08 0.86 7.80 -51.93 -0.41 0.45 16 41 H 0.09 1.07 7.31 -51.93 -0.38 0.69 16 42 H 0.07 1.11 5.48 -51.93 -0.28 0.82 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.01 0.34 7.72 -51.93 -0.40 -0.06 16 45 H 0.09 2.34 6.19 -51.93 -0.32 2.01 16 LS Contribution 355.15 15.07 5.35 5.35 Total: -1.00 -31.64 355.15 -9.88 -41.52 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -6.35 Total: -1.01 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -2.35 Total: -2.64 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: -0.49 Total: -47.50 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -1.02 Total: -12.30 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.64 -9.88 -41.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946589041.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.258 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds