Wall clock time and date at job start Tue Mar 31 2020 13:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34783 * 119.99370 * 2 1 4 4 O 1.21280 * 119.99648 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.00351 * 359.97438 * 3 2 1 6 6 C 1.50696 * 109.46955 * 180.02562 * 5 3 2 7 7 C 1.33637 * 126.03880 * 90.00242 * 6 5 3 8 8 N 1.31781 * 114.50045 * 179.97438 * 7 6 5 9 9 C 1.29022 * 117.12809 * 359.97438 * 8 7 6 10 10 S 1.70977 * 110.16552 * 359.72757 * 9 8 7 11 11 C 1.46493 * 120.00546 * 179.97438 * 2 1 3 12 12 H 1.09002 * 110.21581 * 181.93350 * 11 2 1 13 13 C 1.50132 * 110.24956 * 304.01975 * 11 2 1 14 14 C 1.54845 * 110.81635 * 216.65488 * 13 11 2 15 15 C 1.54899 * 110.13966 * 321.12912 * 14 13 11 16 16 N 1.43432 * 116.08402 * 318.64555 * 15 14 13 17 17 C 1.36944 * 120.53288 * 271.54675 * 16 15 14 18 18 H 1.07994 * 120.00007 * 336.68742 * 17 16 15 19 19 C 1.38807 * 119.99607 * 156.69144 * 17 16 15 20 20 N 1.31620 * 120.00425 * 340.43059 * 19 17 16 21 21 Si 1.86809 * 119.99801 * 160.43008 * 19 17 16 22 22 H 1.48496 * 109.46881 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47096 * 119.99880 * 21 19 17 24 24 H 1.48501 * 109.47033 * 239.99908 * 21 19 17 25 25 C 1.50170 * 118.92696 * 91.56460 * 16 15 14 26 26 C 1.46234 * 107.53195 * 289.59120 * 25 16 15 27 27 H 1.09003 * 109.47106 * 270.00074 * 1 2 3 28 28 H 1.09000 * 109.47408 * 30.00364 * 1 2 3 29 29 H 1.09002 * 109.46514 * 150.00294 * 1 2 3 30 30 H 1.08999 * 109.47209 * 300.00297 * 5 3 2 31 31 H 1.09001 * 109.46643 * 60.00606 * 5 3 2 32 32 H 1.07997 * 122.74704 * 0.02562 * 7 6 5 33 33 H 1.08000 * 124.92025 * 179.97438 * 9 8 7 34 34 H 1.08997 * 109.20492 * 337.00001 * 13 11 2 35 35 H 1.09004 * 109.20507 * 96.35261 * 13 11 2 36 36 H 1.08994 * 109.35227 * 200.92814 * 14 13 11 37 37 H 1.08995 * 109.35639 * 81.33946 * 14 13 11 38 38 H 1.09002 * 108.15880 * 196.92254 * 15 14 13 39 39 H 1.09007 * 108.15648 * 80.36389 * 15 14 13 40 40 H 0.96998 * 120.00013 * 180.02562 * 20 19 17 41 41 H 1.09002 * 109.84533 * 49.09915 * 25 16 15 42 42 H 1.09001 * 109.84188 * 170.01778 * 25 16 15 43 43 H 1.09000 * 108.52051 * 179.65384 * 26 25 16 44 44 H 1.09001 * 108.52280 * 297.32076 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1674 -0.0005 5 6 1.3852 2.4724 -0.0006 6 6 2.3645 3.6178 -0.0011 7 6 2.8753 4.2150 -1.0820 8 7 3.7140 5.1968 -0.8188 9 6 3.9386 5.4615 0.4238 10 16 3.0310 4.4125 1.4233 11 6 2.1976 -1.2686 0.0006 12 1 3.2712 -1.0835 0.0350 13 6 1.7750 -2.1121 1.1684 14 6 2.9798 -2.8941 1.7470 15 6 3.8922 -3.3938 0.5992 16 7 3.2226 -3.9137 -0.5577 17 6 2.8806 -5.2380 -0.6272 18 1 3.4121 -5.9649 -0.0311 19 6 1.8510 -5.6458 -1.4640 20 7 0.9621 -4.7725 -1.8878 21 14 1.7269 -7.4344 -1.9888 22 1 2.8398 -8.2070 -1.3808 23 1 0.4288 -7.9946 -1.5346 24 1 1.8137 -7.5232 -3.4686 25 6 2.9030 -2.9826 -1.6917 26 6 1.8420 -2.0841 -1.2383 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3632 -0.8901 -0.5138 30 1 0.7589 2.5299 -0.8908 31 1 0.7583 2.5303 0.8892 32 1 2.6211 3.9178 -2.0886 33 1 4.6007 6.2364 0.7810 34 1 1.3594 -1.4686 1.9437 35 1 1.0123 -2.8194 0.8425 36 1 2.6156 -3.7486 2.3172 37 1 3.5522 -2.2405 2.4052 38 1 4.5405 -4.1749 0.9962 39 1 4.5241 -2.5642 0.2819 40 1 0.2424 -5.0576 -2.4722 41 1 3.7886 -2.4052 -1.9572 42 1 2.5616 -3.5542 -2.5548 43 1 1.6013 -1.3959 -2.0486 44 1 0.9560 -2.6789 -1.0161 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948459638.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:00 Heat of formation + Delta-G solvation = 47.095236 kcal Electronic energy + Delta-G solvation = -25938.475372 eV Core-core repulsion = 22405.042852 eV Total energy + Delta-G solvation = -3533.432520 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.21289 -39.46834 -37.69748 -35.22602 -33.24578 -32.51989 -31.15760 -30.52842 -27.96417 -26.82648 -26.05069 -24.86624 -23.62808 -23.08875 -20.60358 -19.94307 -19.49249 -18.52354 -18.08107 -17.00910 -16.70259 -16.01535 -15.66124 -15.14285 -14.85436 -14.38737 -14.06587 -13.91195 -13.79872 -13.66747 -13.44733 -13.09437 -12.94113 -12.76308 -12.45323 -12.15633 -11.93825 -11.74139 -11.36051 -11.34182 -11.22874 -10.79117 -10.74471 -10.27767 -10.16460 -9.98063 -9.81876 -9.79459 -9.67256 -9.46220 -9.31293 -9.28530 -8.99632 -8.52409 -8.21201 -6.73057 -5.81430 -3.19454 0.57267 1.23410 1.61855 2.71451 2.76942 3.27808 3.35964 3.44907 3.47184 4.19799 4.49850 4.52462 4.70746 4.85140 5.09805 5.13255 5.32144 5.33627 5.38404 5.51562 5.57225 5.63472 5.75359 5.81102 5.87577 6.01828 6.18276 6.27606 6.30922 6.50660 6.52908 6.62016 6.86589 6.89976 6.93582 7.05423 7.12214 7.21880 7.49510 7.57109 7.70136 7.72684 7.91326 8.36688 8.41369 9.17611 9.85564 10.39035 11.26268 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.027591 B = 0.002940 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.574555 B = 9521.315818 C = 9676.212806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.602 5.602 3 C 0.510 3.490 4 O -0.534 6.534 5 C -0.064 4.064 6 C -0.192 4.192 7 C 0.041 3.959 8 N -0.469 5.469 9 C 0.012 3.988 10 S 0.130 5.870 11 C 0.141 3.859 12 H 0.097 0.903 13 C -0.111 4.111 14 C -0.140 4.140 15 C 0.154 3.846 16 N -0.589 5.589 17 C -0.243 4.243 18 H 0.068 0.932 19 C 0.001 3.999 20 N -0.903 5.903 21 Si 0.899 3.101 22 H -0.279 1.279 23 H -0.293 1.293 24 H -0.290 1.290 25 C 0.168 3.832 26 C -0.133 4.133 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.174 0.826 33 H 0.197 0.803 34 H 0.038 0.962 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.043 0.957 38 H 0.033 0.967 39 H 0.029 0.971 40 H 0.251 0.749 41 H 0.007 0.993 42 H 0.093 0.907 43 H 0.029 0.971 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.677 17.583 5.848 18.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.334 5.334 3 C 0.296 3.704 4 O -0.411 6.411 5 C -0.107 4.107 6 C -0.314 4.314 7 C -0.110 4.110 8 N -0.183 5.183 9 C -0.286 4.286 10 S 0.382 5.618 11 C 0.039 3.961 12 H 0.115 0.885 13 C -0.149 4.149 14 C -0.181 4.181 15 C 0.025 3.975 16 N -0.310 5.310 17 C -0.373 4.373 18 H 0.085 0.915 19 C -0.197 4.197 20 N -0.548 5.548 21 Si 0.730 3.270 22 H -0.205 1.205 23 H -0.220 1.220 24 H -0.217 1.217 25 C 0.044 3.956 26 C -0.172 4.172 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.132 0.868 31 H 0.122 0.878 32 H 0.191 0.809 33 H 0.214 0.786 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.047 0.953 40 H 0.061 0.939 41 H 0.025 0.975 42 H 0.111 0.889 43 H 0.048 0.952 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.955 17.762 6.389 18.977 hybrid contribution -0.593 -1.162 -1.046 1.672 sum -2.548 16.601 5.343 17.625 Atomic orbital electron populations 1.21797 0.80029 1.03506 1.01613 1.48077 1.06858 1.06217 1.72247 1.20313 0.88132 0.84893 0.77082 1.90712 1.13706 1.87109 1.49601 1.20120 0.96047 0.88925 1.05576 1.25342 1.06690 1.03916 0.95403 1.21676 0.95658 0.93562 1.00094 1.66290 1.15838 1.16891 1.19241 1.28308 1.04573 1.04306 0.91379 1.83943 1.38798 1.27466 1.11590 1.20672 0.97047 0.80859 0.97516 0.88496 1.21737 0.99445 0.97701 0.96061 1.22816 0.97525 0.98444 0.99324 1.20429 0.93168 0.96083 0.87807 1.44260 1.68547 1.06150 1.12025 1.19272 1.11473 0.83071 1.23475 0.91463 1.24866 0.95336 0.97328 1.02155 1.69957 1.14116 1.33038 1.37726 0.86267 0.77269 0.85214 0.78278 1.20450 1.21977 1.21715 1.20096 0.92722 0.90287 0.92461 1.21342 1.04371 0.97130 0.94373 0.92811 0.91656 0.89860 0.86789 0.87778 0.80929 0.78599 0.94329 0.90430 0.92811 0.93780 0.94871 0.95259 0.93901 0.97484 0.88937 0.95200 0.87714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.84 9.44 59.85 0.57 1.41 16 2 N -0.60 -9.11 2.64 -175.86 -0.46 -9.58 16 3 C 0.51 7.71 7.67 -10.98 -0.08 7.62 16 4 O -0.53 -10.32 15.39 5.56 0.09 -10.23 16 5 C -0.06 -0.67 4.79 -29.04 -0.14 -0.81 16 6 C -0.19 -2.25 5.09 -35.92 -0.18 -2.43 16 7 C 0.04 0.51 11.25 -19.19 -0.22 0.29 16 8 N -0.47 -6.04 10.54 -15.75 -0.17 -6.20 16 9 C 0.01 0.12 12.23 51.58 0.63 0.75 16 10 S 0.13 1.33 23.22 -107.50 -2.50 -1.17 16 11 C 0.14 2.61 2.30 -69.60 -0.16 2.45 16 12 H 0.10 2.04 5.12 -51.93 -0.27 1.78 16 13 C -0.11 -2.06 4.82 -27.19 -0.13 -2.19 16 14 C -0.14 -2.66 6.41 -24.76 -0.16 -2.82 16 15 C 0.15 3.29 5.17 -4.66 -0.02 3.27 16 16 N -0.59 -14.28 2.60 -175.08 -0.46 -14.74 16 17 C -0.24 -6.43 9.63 -15.06 -0.14 -6.57 16 18 H 0.07 1.79 7.89 -52.49 -0.41 1.37 16 19 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 20 N -0.90 -23.94 9.43 55.49 0.52 -23.42 16 21 Si 0.90 21.10 29.60 -169.99 -5.03 16.07 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 C 0.17 3.92 5.24 -5.20 -0.03 3.89 16 26 C -0.13 -2.75 3.82 -30.19 -0.12 -2.86 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.54 6.44 -51.93 -0.33 0.20 16 29 H 0.08 1.08 7.16 -51.93 -0.37 0.70 16 30 H 0.11 0.91 7.40 -51.93 -0.38 0.53 16 31 H 0.10 0.85 8.11 -51.93 -0.42 0.43 16 32 H 0.17 1.87 8.06 -52.49 -0.42 1.45 16 33 H 0.20 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.04 0.65 7.83 -51.93 -0.41 0.24 16 35 H 0.08 1.64 6.82 -51.93 -0.35 1.29 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.03 0.70 7.99 -51.93 -0.41 0.29 16 39 H 0.03 0.61 6.90 -51.92 -0.36 0.25 16 40 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16 41 H 0.01 0.16 8.12 -51.93 -0.42 -0.26 16 42 H 0.09 2.38 6.05 -51.93 -0.31 2.07 16 43 H 0.03 0.59 8.02 -51.93 -0.42 0.18 16 44 H 0.10 2.41 5.07 -51.93 -0.26 2.15 16 LS Contribution 355.28 15.07 5.35 5.35 Total: -1.00 -31.00 355.28 -9.31 -40.32 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.39 Total: 1.66 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -0.27 Total: 1.93 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -0.56 Total: -53.93 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.50 Total: -1.17 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.00 -9.31 -40.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948459638.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.413 kcal (2) G-P(sol) polarization free energy of solvation -31.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds