Wall clock time and date at job start Tue Mar 31 2020 13:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34783 * 119.99370 * 2 1 4 4 O 1.21280 * 119.99648 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.00351 * 359.97438 * 3 2 1 6 6 C 1.50696 * 109.46955 * 180.02562 * 5 3 2 7 7 C 1.33637 * 126.03880 * 90.00242 * 6 5 3 8 8 N 1.31781 * 114.50045 * 179.97438 * 7 6 5 9 9 C 1.29022 * 117.12809 * 359.97438 * 8 7 6 10 10 S 1.70977 * 110.16552 * 359.72757 * 9 8 7 11 11 C 1.46493 * 120.00546 * 179.97438 * 2 1 3 12 12 H 1.09002 * 110.21581 * 181.93350 * 11 2 1 13 13 C 1.50132 * 110.24956 * 304.01975 * 11 2 1 14 14 C 1.54845 * 110.81635 * 216.65488 * 13 11 2 15 15 C 1.54899 * 110.13966 * 321.12912 * 14 13 11 16 16 N 1.43432 * 116.08402 * 318.64555 * 15 14 13 17 17 C 1.36944 * 120.53288 * 271.54675 * 16 15 14 18 18 H 1.07994 * 120.00007 * 336.68742 * 17 16 15 19 19 C 1.38807 * 119.99607 * 156.69144 * 17 16 15 20 20 N 1.31620 * 120.00425 * 340.43059 * 19 17 16 21 21 Si 1.86809 * 119.99801 * 160.43008 * 19 17 16 22 22 H 1.48496 * 109.46881 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47096 * 119.99880 * 21 19 17 24 24 H 1.48501 * 109.47033 * 239.99908 * 21 19 17 25 25 C 1.50170 * 118.92696 * 91.56460 * 16 15 14 26 26 C 1.46234 * 107.53195 * 289.59120 * 25 16 15 27 27 H 1.09003 * 109.47106 * 270.00074 * 1 2 3 28 28 H 1.09000 * 109.47408 * 30.00364 * 1 2 3 29 29 H 1.09002 * 109.46514 * 150.00294 * 1 2 3 30 30 H 1.08999 * 109.47209 * 300.00297 * 5 3 2 31 31 H 1.09001 * 109.46643 * 60.00606 * 5 3 2 32 32 H 1.07997 * 122.74704 * 0.02562 * 7 6 5 33 33 H 1.08000 * 124.92025 * 179.97438 * 9 8 7 34 34 H 1.08997 * 109.20492 * 337.00001 * 13 11 2 35 35 H 1.09004 * 109.20507 * 96.35261 * 13 11 2 36 36 H 1.08994 * 109.35227 * 200.92814 * 14 13 11 37 37 H 1.08995 * 109.35639 * 81.33946 * 14 13 11 38 38 H 1.09002 * 108.15880 * 196.92254 * 15 14 13 39 39 H 1.09007 * 108.15648 * 80.36389 * 15 14 13 40 40 H 0.96998 * 120.00013 * 180.02562 * 20 19 17 41 41 H 1.09002 * 109.84533 * 49.09915 * 25 16 15 42 42 H 1.09001 * 109.84188 * 170.01778 * 25 16 15 43 43 H 1.09000 * 108.52051 * 179.65384 * 26 25 16 44 44 H 1.09001 * 108.52280 * 297.32076 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1674 -0.0005 5 6 1.3852 2.4724 -0.0006 6 6 2.3645 3.6178 -0.0011 7 6 2.8753 4.2150 -1.0820 8 7 3.7140 5.1968 -0.8188 9 6 3.9386 5.4615 0.4238 10 16 3.0310 4.4125 1.4233 11 6 2.1976 -1.2686 0.0006 12 1 3.2712 -1.0835 0.0350 13 6 1.7750 -2.1121 1.1684 14 6 2.9798 -2.8941 1.7470 15 6 3.8922 -3.3938 0.5992 16 7 3.2226 -3.9137 -0.5577 17 6 2.8806 -5.2380 -0.6272 18 1 3.4121 -5.9649 -0.0311 19 6 1.8510 -5.6458 -1.4640 20 7 0.9621 -4.7725 -1.8878 21 14 1.7269 -7.4344 -1.9888 22 1 2.8398 -8.2070 -1.3808 23 1 0.4288 -7.9946 -1.5346 24 1 1.8137 -7.5232 -3.4686 25 6 2.9030 -2.9826 -1.6917 26 6 1.8420 -2.0841 -1.2383 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3632 -0.8901 -0.5138 30 1 0.7589 2.5299 -0.8908 31 1 0.7583 2.5303 0.8892 32 1 2.6211 3.9178 -2.0886 33 1 4.6007 6.2364 0.7810 34 1 1.3594 -1.4686 1.9437 35 1 1.0123 -2.8194 0.8425 36 1 2.6156 -3.7486 2.3172 37 1 3.5522 -2.2405 2.4052 38 1 4.5405 -4.1749 0.9962 39 1 4.5241 -2.5642 0.2819 40 1 0.2424 -5.0576 -2.4722 41 1 3.7886 -2.4052 -1.9572 42 1 2.5616 -3.5542 -2.5548 43 1 1.6013 -1.3959 -2.0486 44 1 0.9560 -2.6789 -1.0161 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948459638.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:59 Heat of formation + Delta-G solvation = 28.998021 kcal Electronic energy + Delta-G solvation = -25939.260126 eV Core-core repulsion = 22405.042852 eV Total energy + Delta-G solvation = -3534.217274 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.38548 -40.44653 -39.23566 -36.68302 -34.67155 -33.80088 -32.75314 -32.32616 -28.94195 -28.00684 -27.61829 -25.99970 -24.98978 -24.90656 -21.89149 -21.31603 -20.75082 -19.90517 -18.93827 -18.61613 -18.12576 -17.16421 -16.90401 -16.71476 -16.11653 -15.71336 -15.50414 -15.34711 -15.14662 -14.89370 -14.79217 -14.29489 -14.17487 -13.89746 -13.57825 -13.44972 -13.32469 -13.27028 -13.05373 -12.91703 -12.63448 -12.51106 -12.14704 -12.03040 -11.81167 -11.70337 -11.61982 -11.19297 -11.03313 -10.89467 -10.61760 -10.47604 -10.16344 -9.83896 -9.52700 -8.67387 -7.82245 -5.22650 -0.24195 0.46362 0.81561 1.47290 1.51795 1.59861 1.64352 1.82300 2.16391 2.54919 3.31248 3.44164 3.57199 3.62784 3.80856 4.03975 4.10988 4.17665 4.22975 4.33858 4.39847 4.51655 4.57547 4.60592 4.64297 4.74150 4.80348 4.85291 4.90404 4.97002 5.09787 5.18609 5.19128 5.22162 5.34380 5.36023 5.51067 5.60506 5.69248 5.75928 6.07254 6.42177 6.52419 6.75677 7.17596 7.21250 7.89441 8.41746 9.22875 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.027591 B = 0.002940 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.574555 B = 9521.315818 C = 9676.212806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.604 5.604 3 C 0.506 3.494 4 O -0.583 6.583 5 C -0.054 4.054 6 C -0.209 4.209 7 C 0.025 3.975 8 N -0.504 5.504 9 C 0.013 3.987 10 S 0.151 5.849 11 C 0.155 3.845 12 H 0.073 0.927 13 C -0.099 4.099 14 C -0.133 4.133 15 C 0.151 3.849 16 N -0.601 5.601 17 C -0.260 4.260 18 H 0.061 0.939 19 C -0.038 4.038 20 N -0.914 5.914 21 Si 0.957 3.043 22 H -0.276 1.276 23 H -0.293 1.293 24 H -0.293 1.293 25 C 0.172 3.828 26 C -0.116 4.116 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.064 0.936 30 H 0.144 0.856 31 H 0.135 0.865 32 H 0.178 0.822 33 H 0.228 0.772 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.031 0.969 39 H 0.030 0.970 40 H 0.248 0.752 41 H 0.006 0.994 42 H 0.064 0.936 43 H 0.032 0.968 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.727 19.055 7.032 20.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.335 5.335 3 C 0.295 3.705 4 O -0.463 6.463 5 C -0.096 4.096 6 C -0.331 4.331 7 C -0.126 4.126 8 N -0.218 5.218 9 C -0.284 4.284 10 S 0.404 5.596 11 C 0.051 3.949 12 H 0.091 0.909 13 C -0.138 4.138 14 C -0.175 4.175 15 C 0.023 3.977 16 N -0.323 5.323 17 C -0.390 4.390 18 H 0.079 0.921 19 C -0.234 4.234 20 N -0.560 5.560 21 Si 0.786 3.214 22 H -0.201 1.201 23 H -0.220 1.220 24 H -0.220 1.220 25 C 0.048 3.952 26 C -0.156 4.156 27 H 0.092 0.908 28 H 0.122 0.878 29 H 0.082 0.918 30 H 0.161 0.839 31 H 0.153 0.847 32 H 0.195 0.805 33 H 0.244 0.756 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.058 0.942 41 H 0.025 0.975 42 H 0.082 0.918 43 H 0.050 0.950 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.031 19.250 7.594 20.915 hybrid contribution -0.199 -1.586 -1.401 2.125 sum -3.230 17.664 6.193 18.995 Atomic orbital electron populations 1.22056 0.77473 1.04538 1.03278 1.48091 1.08340 1.05028 1.72071 1.21119 0.87805 0.86038 0.75560 1.90693 1.16043 1.87837 1.51701 1.20178 0.95620 0.85338 1.08417 1.25553 1.07246 1.04438 0.95842 1.21894 0.95954 0.93916 1.00820 1.66316 1.16955 1.17893 1.20588 1.28890 1.04195 1.04480 0.90831 1.83826 1.38226 1.26808 1.10762 1.20193 0.96204 0.82352 0.96143 0.90864 1.21566 0.98350 0.97264 0.96573 1.22720 0.97490 0.98772 0.98479 1.20501 0.93419 0.95971 0.87800 1.44338 1.68899 1.05867 1.13176 1.19409 1.11604 0.84058 1.23938 0.92136 1.25457 0.95252 1.00420 1.02310 1.70083 1.14117 1.34087 1.37666 0.85382 0.76996 0.81617 0.77385 1.20145 1.21986 1.22040 1.19979 0.93374 0.90255 0.91620 1.21060 1.02302 0.96644 0.95546 0.90794 0.87779 0.91753 0.83882 0.84722 0.80484 0.75590 0.91989 0.93181 0.93214 0.91565 0.95105 0.95211 0.94212 0.97543 0.91762 0.94956 0.89797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.36 9.44 127.77 1.21 2.57 16 2 N -0.60 -17.14 2.64 -828.70 -2.19 -19.33 16 3 C 0.51 14.29 7.67 87.66 0.67 14.96 16 4 O -0.58 -22.08 15.39 -3.03 -0.05 -22.13 16 5 C -0.05 -0.94 4.79 29.10 0.14 -0.80 16 6 C -0.21 -4.45 5.09 24.64 0.13 -4.32 16 7 C 0.02 0.59 11.25 83.66 0.94 1.53 16 8 N -0.50 -12.39 10.54 -203.75 -2.15 -14.54 16 9 C 0.01 0.24 12.23 130.66 1.60 1.83 16 10 S 0.15 2.75 23.22 -56.49 -1.31 1.44 16 11 C 0.15 5.66 2.30 43.91 0.10 5.77 16 12 H 0.07 3.09 5.12 -2.39 -0.01 3.08 16 13 C -0.10 -3.59 4.82 30.30 0.15 -3.44 16 14 C -0.13 -4.98 6.41 31.87 0.20 -4.78 16 15 C 0.15 6.50 5.17 87.60 0.45 6.96 16 16 N -0.60 -29.75 2.60 -707.83 -1.84 -31.60 16 17 C -0.26 -13.98 9.63 84.03 0.81 -13.17 16 18 H 0.06 3.27 7.89 -2.91 -0.02 3.25 16 19 C -0.04 -2.03 4.91 84.86 0.42 -1.62 16 20 N -0.91 -49.27 9.43 21.65 0.20 -49.07 16 21 Si 0.96 43.81 29.60 68.60 2.03 45.84 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 24 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 25 C 0.17 8.23 5.24 83.58 0.44 8.67 16 26 C -0.12 -4.87 3.82 28.35 0.11 -4.76 16 27 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.10 1.26 6.44 -2.39 -0.02 1.24 16 29 H 0.06 1.56 7.16 -2.39 -0.02 1.54 16 30 H 0.14 1.68 7.40 -2.39 -0.02 1.66 16 31 H 0.13 1.56 8.11 -2.39 -0.02 1.55 16 32 H 0.18 3.72 8.06 -2.91 -0.02 3.70 16 33 H 0.23 2.45 8.06 -2.91 -0.02 2.43 16 34 H 0.06 1.94 7.83 -2.39 -0.02 1.92 16 35 H 0.05 2.11 6.82 -2.38 -0.02 2.09 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.03 1.32 7.99 -2.39 -0.02 1.30 16 39 H 0.03 1.26 6.90 -2.38 -0.02 1.24 16 40 H 0.25 13.09 8.31 -92.71 -0.77 12.31 16 41 H 0.01 0.30 8.12 -2.39 -0.02 0.29 16 42 H 0.06 3.43 6.05 -2.39 -0.01 3.41 16 43 H 0.03 1.30 8.02 -2.39 -0.02 1.28 16 44 H 0.08 3.94 5.07 -2.39 -0.01 3.93 16 Total: -1.00 -68.80 355.28 3.06 -65.74 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 1.00 Total: 14.26 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 7.36 Total: 9.38 kcal Atomic # 7 Polarization: -108.56 SS G_CDS: -5.97 Total: -114.53 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.05 Total: -22.13 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -1.31 Total: 1.44 kcal Total: -68.80 3.06 -65.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948459638.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.738 kcal (2) G-P(sol) polarization free energy of solvation -68.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds