Wall clock time and date at job start Tue Mar 31 2020 13:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34777 * 119.99907 * 2 1 4 4 O 1.21273 * 119.99941 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.99685 * 359.97438 * 3 2 1 6 6 C 1.50704 * 109.46683 * 179.97438 * 5 3 2 7 7 C 1.33640 * 122.74804 * 124.73850 * 6 5 3 8 8 S 1.76190 * 107.92500 * 179.97438 * 7 6 5 9 9 C 1.70982 * 90.28345 * 0.27047 * 8 7 6 10 10 N 1.29022 * 110.16460 * 359.84009 * 9 8 7 11 11 C 1.46504 * 120.00112 * 179.97438 * 2 1 3 12 12 H 1.09000 * 108.44908 * 182.31048 * 11 2 1 13 13 C 1.52569 * 108.50984 * 64.76516 * 11 2 1 14 14 C 1.50887 * 109.35367 * 153.73534 * 13 11 2 15 15 C 1.53947 * 110.09511 * 91.88653 * 14 13 11 16 16 N 1.47604 * 112.14374 * 319.43241 * 15 14 13 17 17 C 1.36935 * 118.64480 * 137.89147 * 16 15 14 18 18 H 1.08006 * 120.00037 * 206.48383 * 17 16 15 19 19 C 1.38813 * 120.00285 * 26.48200 * 17 16 15 20 20 N 1.31618 * 119.99677 * 15.69679 * 19 17 16 21 21 Si 1.86794 * 120.00146 * 195.70017 * 19 17 16 22 22 H 1.48502 * 109.47339 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47290 * 120.00121 * 21 19 17 24 24 H 1.48502 * 109.47060 * 239.99553 * 21 19 17 25 25 C 1.44579 * 122.71231 * 317.87430 * 16 15 14 26 26 C 1.47093 * 108.51287 * 300.00307 * 11 2 1 27 27 H 1.08997 * 109.47245 * 90.00391 * 1 2 3 28 28 H 1.08993 * 109.47389 * 329.99724 * 1 2 3 29 29 H 1.09007 * 109.46962 * 209.99822 * 1 2 3 30 30 H 1.08999 * 109.47207 * 300.00242 * 5 3 2 31 31 H 1.09001 * 109.47057 * 60.00638 * 5 3 2 32 32 H 1.08002 * 126.03430 * 0.03184 * 7 6 5 33 33 H 1.07999 * 124.91589 * 179.83870 * 9 8 7 34 34 H 1.08998 * 109.49067 * 273.69573 * 13 11 2 35 35 H 1.08996 * 109.49068 * 33.76953 * 13 11 2 36 36 H 1.08993 * 109.36495 * 331.69274 * 14 13 11 37 37 H 1.08995 * 109.25861 * 212.00921 * 14 13 11 38 38 H 1.09004 * 108.94559 * 198.74775 * 15 14 13 39 39 H 1.08999 * 108.94710 * 80.11715 * 15 14 13 40 40 H 0.96996 * 120.00158 * 179.97438 * 20 19 17 41 41 H 1.09004 * 109.44903 * 330.67982 * 25 16 15 42 42 H 1.09001 * 109.42725 * 210.75347 * 25 16 15 43 43 H 1.09006 * 109.32539 * 304.32120 * 26 11 2 44 44 H 1.08998 * 109.33477 * 63.79164 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1672 -0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3646 3.6177 0.0002 7 6 2.3483 4.5834 -0.9235 8 16 3.6496 5.7115 -0.5516 9 6 4.0913 4.7682 0.8043 10 7 3.3111 3.7459 0.9081 11 6 2.1976 -1.2687 0.0006 12 1 3.2647 -1.0509 0.0422 13 6 1.9056 -1.9972 -1.3078 14 6 3.0584 -2.9130 -1.6383 15 6 2.8031 -4.3155 -1.0572 16 7 2.2087 -4.2587 0.2927 17 6 1.1934 -5.1247 0.5999 18 1 0.4690 -4.8609 1.3563 19 6 1.0951 -6.3415 -0.0609 20 7 2.1204 -6.8037 -0.7445 21 14 -0.4923 -7.3227 0.0200 22 1 -1.4853 -6.5905 0.8465 23 1 -1.0300 -7.5083 -1.3518 24 1 -0.2234 -8.6497 0.6299 25 6 2.6546 -3.3268 1.3042 26 6 1.8271 -2.0214 1.2088 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3634 0.8899 0.5138 29 1 -0.3633 -0.8901 0.5138 30 1 0.7589 2.5298 -0.8908 31 1 0.7584 2.5302 0.8892 32 1 1.6586 4.6594 -1.7511 33 1 4.9055 4.9953 1.4765 34 1 0.9936 -2.5845 -1.2014 35 1 1.7783 -1.2691 -2.1089 36 1 3.9760 -2.5069 -1.2128 37 1 3.1623 -2.9837 -2.7210 38 1 3.7491 -4.8545 -1.0050 39 1 2.1262 -4.8552 -1.7195 40 1 2.0520 -7.6542 -1.2060 41 1 3.7095 -3.1001 1.1490 42 1 2.5201 -3.7707 2.2906 43 1 2.0186 -1.4077 2.0891 44 1 0.7663 -2.2689 1.1687 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948833657.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:02 Heat of formation + Delta-G solvation = 23.062729 kcal Electronic energy + Delta-G solvation = -25702.835905 eV Core-core repulsion = 22168.361257 eV Total energy + Delta-G solvation = -3534.474648 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.53859 -40.48974 -39.03964 -36.73757 -34.66157 -33.37761 -33.18003 -31.90123 -29.22285 -28.04010 -27.48391 -26.05215 -25.59619 -24.84320 -21.79363 -21.06108 -20.59633 -20.09882 -18.79992 -18.54635 -18.13320 -17.17181 -16.91135 -16.77251 -16.24052 -15.79964 -15.46289 -15.35907 -15.24781 -14.70448 -14.36382 -14.21856 -14.08725 -14.05345 -13.81392 -13.66347 -13.17707 -13.13321 -13.00005 -12.95448 -12.73175 -12.34447 -12.27826 -12.06250 -11.92813 -11.76307 -11.56169 -11.39356 -11.34360 -10.76233 -10.50688 -10.44274 -10.31611 -9.71580 -9.56347 -8.65153 -7.82836 -5.29647 -0.16254 0.55980 0.82434 1.47818 1.49970 1.60024 1.73185 1.77490 2.23401 2.53981 3.30414 3.31281 3.61604 3.70286 3.90524 4.02139 4.11483 4.25279 4.28912 4.36493 4.42965 4.44754 4.45657 4.53507 4.67742 4.69629 4.76271 4.78916 4.92537 4.97954 5.05788 5.12248 5.13746 5.18039 5.26417 5.31509 5.48148 5.56765 5.67312 5.69991 5.80815 6.43056 6.53421 6.89341 7.20302 7.29274 7.95115 8.36657 9.23059 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.032143 B = 0.002637 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.896112 B =10616.025968 C =10838.771815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.614 5.614 3 C 0.508 3.492 4 O -0.578 6.578 5 C -0.058 4.058 6 C 0.054 3.946 7 C -0.252 4.252 8 S 0.153 5.847 9 C 0.007 3.993 10 N -0.491 5.491 11 C 0.163 3.837 12 H 0.060 0.940 13 C -0.095 4.095 14 C -0.130 4.130 15 C 0.191 3.809 16 N -0.601 5.601 17 C -0.258 4.258 18 H 0.069 0.931 19 C -0.051 4.051 20 N -0.938 5.938 21 Si 0.965 3.035 22 H -0.263 1.263 23 H -0.291 1.291 24 H -0.297 1.297 25 C 0.158 3.842 26 C -0.133 4.133 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.143 0.857 31 H 0.127 0.873 32 H 0.206 0.794 33 H 0.216 0.784 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.045 0.955 37 H 0.069 0.931 38 H -0.010 1.010 39 H 0.046 0.954 40 H 0.248 0.752 41 H 0.029 0.971 42 H 0.044 0.956 43 H 0.060 0.940 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.295 26.503 -1.181 26.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.346 5.346 3 C 0.297 3.703 4 O -0.457 6.457 5 C -0.099 4.099 6 C -0.079 4.079 7 C -0.392 4.392 8 S 0.405 5.595 9 C -0.291 4.291 10 N -0.205 5.205 11 C 0.060 3.940 12 H 0.078 0.922 13 C -0.133 4.133 14 C -0.170 4.170 15 C 0.066 3.934 16 N -0.323 5.323 17 C -0.388 4.388 18 H 0.087 0.913 19 C -0.246 4.246 20 N -0.585 5.585 21 Si 0.793 3.207 22 H -0.188 1.188 23 H -0.218 1.218 24 H -0.224 1.224 25 C 0.030 3.970 26 C -0.173 4.173 27 H 0.089 0.911 28 H 0.118 0.882 29 H 0.088 0.912 30 H 0.161 0.839 31 H 0.145 0.855 32 H 0.223 0.777 33 H 0.233 0.767 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.008 0.992 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.048 0.952 42 H 0.062 0.938 43 H 0.078 0.922 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.148 26.942 -1.239 27.153 hybrid contribution -0.747 -1.981 0.087 2.119 sum -3.895 24.960 -1.152 25.289 Atomic orbital electron populations 1.22052 0.77565 1.04506 1.03252 1.48275 1.08377 1.05109 1.72849 1.21029 0.87797 0.86069 0.75379 1.90683 1.16160 1.87695 1.51190 1.20366 0.95823 0.86137 1.07621 1.19970 0.97039 0.97989 0.92860 1.27201 1.06076 0.99610 1.06277 1.83746 1.24896 1.26764 1.24072 1.28798 1.03860 0.94034 1.02420 1.66037 1.05557 1.20468 1.28412 1.19753 0.96277 0.82742 0.95246 0.92152 1.21110 0.99112 0.97235 0.95844 1.21843 0.97866 0.96799 1.00455 1.20743 0.95181 0.91953 0.85501 1.43856 1.40883 1.38960 1.08626 1.19535 1.03228 0.95804 1.20281 0.91303 1.25786 0.99977 0.97498 1.01311 1.70251 1.30059 1.20103 1.38068 0.85246 0.80198 0.78118 0.77116 1.18759 1.21804 1.22432 1.20681 0.94990 0.89361 0.91920 1.21571 1.01756 0.97400 0.96609 0.91057 0.88150 0.91215 0.83914 0.85495 0.77715 0.76739 0.91941 0.91842 0.93604 0.91214 0.99237 0.93531 0.94308 0.95222 0.93761 0.92158 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.25 9.67 127.77 1.24 2.48 16 2 N -0.61 -16.62 2.59 -833.81 -2.16 -18.77 16 3 C 0.51 14.58 7.64 87.66 0.67 15.25 16 4 O -0.58 -22.47 14.74 -3.01 -0.04 -22.52 16 5 C -0.06 -1.06 4.75 29.10 0.14 -0.92 16 6 C 0.05 1.18 5.64 41.52 0.23 1.41 16 7 C -0.25 -4.02 11.07 66.78 0.74 -3.28 16 8 S 0.15 2.16 23.22 -56.49 -1.31 0.85 16 9 C 0.01 0.13 12.23 130.66 1.60 1.73 16 10 N -0.49 -12.98 9.68 -191.55 -1.85 -14.84 16 11 C 0.16 5.56 1.97 43.01 0.08 5.64 16 12 H 0.06 2.42 6.03 -2.39 -0.01 2.41 16 13 C -0.09 -3.32 4.70 29.76 0.14 -3.18 16 14 C -0.13 -5.14 5.71 30.23 0.17 -4.97 16 15 C 0.19 9.44 4.67 86.49 0.40 9.84 16 16 N -0.60 -29.87 2.27 -698.37 -1.59 -31.46 16 17 C -0.26 -13.83 9.44 84.03 0.79 -13.04 16 18 H 0.07 3.58 7.88 -2.91 -0.02 3.55 16 19 C -0.05 -2.80 4.87 84.86 0.41 -2.39 16 20 N -0.94 -55.57 11.01 21.65 0.24 -55.33 16 21 Si 0.96 44.28 29.58 68.60 2.03 46.31 16 22 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 23 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 24 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 25 C 0.16 6.77 5.65 87.37 0.49 7.27 16 26 C -0.13 -4.69 4.85 29.39 0.14 -4.55 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.10 1.14 6.44 -2.39 -0.02 1.12 16 29 H 0.07 1.45 6.37 -2.38 -0.02 1.44 16 30 H 0.14 1.52 7.99 -2.39 -0.02 1.50 16 31 H 0.13 1.82 7.40 -2.39 -0.02 1.80 16 32 H 0.21 1.84 8.06 -2.91 -0.02 1.82 16 33 H 0.22 2.87 8.06 -2.91 -0.02 2.85 16 34 H 0.06 2.40 7.48 -2.39 -0.02 2.38 16 35 H 0.06 2.00 8.05 -2.39 -0.02 1.98 16 36 H 0.05 1.82 7.31 -2.39 -0.02 1.80 16 37 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 38 H -0.01 -0.58 8.03 -2.38 -0.02 -0.60 16 39 H 0.05 2.54 6.33 -2.39 -0.02 2.52 16 40 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 41 H 0.03 1.28 8.06 -2.38 -0.02 1.26 16 42 H 0.04 1.91 7.99 -2.39 -0.02 1.89 16 43 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 44 H 0.07 2.34 6.63 -2.39 -0.02 2.33 16 Total: -1.00 -75.31 358.11 3.57 -71.73 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 1.00 Total: 12.71 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 7.26 Total: 11.31 kcal Atomic # 7 Polarization: -115.04 SS G_CDS: -5.36 Total: -120.40 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.04 Total: -22.52 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -1.31 Total: 0.85 kcal Total: -75.31 3.57 -71.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948833657.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.798 kcal (2) G-P(sol) polarization free energy of solvation -75.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds