Wall clock time and date at job start Tue Mar 31 2020 13:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34773 * 119.99925 * 2 1 4 4 O 1.21285 * 119.99807 * 179.97438 * 3 2 1 5 5 C 1.50695 * 120.00229 * 0.02562 * 3 2 1 6 6 C 1.50702 * 109.47479 * 179.97438 * 5 3 2 7 7 C 1.33639 * 122.75195 * 125.00123 * 6 5 3 8 8 S 1.76195 * 107.92507 * 180.02562 * 7 6 5 9 9 C 1.70982 * 90.28443 * 359.97438 * 8 7 6 10 10 N 1.29032 * 110.16251 * 359.73737 * 9 8 7 11 11 C 1.46500 * 119.99780 * 180.02562 * 2 1 3 12 12 H 1.09005 * 110.32452 * 182.00964 * 11 2 1 13 13 C 1.50126 * 110.24828 * 304.01468 * 11 2 1 14 14 C 1.54844 * 110.81683 * 216.65955 * 13 11 2 15 15 C 1.54411 * 110.07024 * 321.07906 * 14 13 11 16 16 N 1.43443 * 116.38320 * 318.64806 * 15 14 13 17 17 C 1.36931 * 120.53462 * 271.73068 * 16 15 14 18 18 H 1.07997 * 120.00003 * 146.03157 * 17 16 15 19 19 C 1.38813 * 120.00149 * 326.02654 * 17 16 15 20 20 N 1.31614 * 120.00094 * 331.40743 * 19 17 16 21 21 Si 1.86800 * 119.99715 * 151.13273 * 19 17 16 22 22 H 1.48507 * 109.47061 * 270.27399 * 21 19 17 23 23 H 1.48494 * 109.47362 * 30.27639 * 21 19 17 24 24 H 1.48505 * 109.47260 * 150.27598 * 21 19 17 25 25 C 1.50167 * 118.92172 * 91.46336 * 16 15 14 26 26 C 1.46243 * 107.53018 * 289.82998 * 25 16 15 27 27 H 1.08996 * 109.47407 * 269.99739 * 1 2 3 28 28 H 1.09002 * 109.47234 * 29.99584 * 1 2 3 29 29 H 1.09002 * 109.47523 * 149.99846 * 1 2 3 30 30 H 1.08995 * 109.47228 * 299.99682 * 5 3 2 31 31 H 1.09001 * 109.47271 * 59.99620 * 5 3 2 32 32 H 1.08001 * 126.03368 * 359.97438 * 7 6 5 33 33 H 1.07992 * 124.91684 * 179.97438 * 9 8 7 34 34 H 1.08993 * 109.20720 * 337.00232 * 13 11 2 35 35 H 1.09003 * 109.20837 * 96.31631 * 13 11 2 36 36 H 1.09002 * 109.35964 * 81.33699 * 14 13 11 37 37 H 1.08993 * 109.36108 * 201.06718 * 14 13 11 38 38 H 1.09000 * 107.88974 * 196.93703 * 15 14 13 39 39 H 1.08990 * 108.10532 * 80.53501 * 15 14 13 40 40 H 0.97003 * 120.00194 * 353.96713 * 20 19 17 41 41 H 1.08993 * 109.85287 * 49.34286 * 25 16 15 42 42 H 1.09007 * 109.84135 * 170.33047 * 25 16 15 43 43 H 1.08996 * 108.51689 * 179.65576 * 26 25 16 44 44 H 1.08995 * 108.52484 * 297.33141 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3646 3.6178 0.0011 7 6 2.3444 4.5866 -0.9191 8 16 3.6483 5.7127 -0.5497 9 6 4.0905 4.7692 0.8059 10 7 3.3073 3.7493 0.9125 11 6 2.1974 -1.2688 -0.0006 12 1 3.2714 -1.0859 0.0354 13 6 1.7748 -2.1132 1.1665 14 6 2.9795 -2.8957 1.7445 15 6 3.8871 -3.3932 0.5986 16 7 3.2222 -3.9134 -0.5611 17 6 2.8795 -5.2373 -0.6313 18 1 1.9784 -5.5352 -1.1468 19 6 3.6902 -6.1964 -0.0399 20 7 4.9830 -5.9815 0.0812 21 14 2.9450 -7.7890 0.5908 22 1 2.5315 -7.6154 2.0065 23 1 1.7596 -8.1407 -0.2315 24 1 3.9515 -8.8770 0.4990 25 6 2.9028 -2.9813 -1.6943 26 6 1.8417 -2.0832 -1.2401 27 1 -0.3634 0.0000 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5139 30 1 0.7584 2.5303 -0.8891 31 1 0.7590 2.5298 0.8908 32 1 1.6517 4.6650 -1.7441 33 1 4.9048 4.9962 1.4779 34 1 1.3593 -1.4703 1.9424 35 1 1.0115 -2.8197 0.8403 36 1 3.5521 -2.2427 2.4032 37 1 2.6155 -3.7521 2.3119 38 1 4.5334 -4.1745 0.9986 39 1 4.5205 -2.5640 0.2837 40 1 5.3834 -5.1941 -0.3196 41 1 3.7882 -2.4037 -1.9593 42 1 2.5601 -3.5521 -2.5575 43 1 1.6011 -1.3943 -2.0498 44 1 0.9558 -2.6781 -1.0184 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948833658.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:06 Heat of formation + Delta-G solvation = 45.810671 kcal Electronic energy + Delta-G solvation = -25814.314494 eV Core-core repulsion = 22280.826271 eV Total energy + Delta-G solvation = -3533.488223 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.53910 -39.50891 -37.73211 -35.37016 -33.23453 -32.14719 -31.80065 -30.10033 -28.38172 -26.92686 -25.98689 -25.14620 -23.96249 -23.04832 -20.69293 -19.79809 -19.45827 -18.72861 -18.03521 -17.19036 -16.96448 -16.13376 -15.89203 -15.36891 -14.79044 -14.51034 -14.03580 -13.90213 -13.74710 -13.54106 -13.47195 -13.20586 -13.12437 -12.91587 -12.57614 -12.37151 -12.24594 -12.04389 -11.64427 -11.46251 -11.09585 -10.67422 -10.54298 -10.39276 -10.20794 -10.03002 -9.93568 -9.79185 -9.75718 -9.68938 -9.51314 -9.17452 -9.02279 -8.41217 -8.30569 -6.77173 -5.95506 -3.29295 0.52270 1.19456 1.51079 2.57816 2.77607 3.19485 3.52286 3.54001 3.70509 3.97374 4.57900 4.60035 4.69091 4.86376 5.01650 5.07791 5.15838 5.17882 5.24817 5.34549 5.44211 5.47646 5.60623 5.63178 5.74526 5.87166 6.00173 6.02679 6.13288 6.32468 6.40473 6.48966 6.58535 6.68671 6.73239 6.86335 6.95230 6.99625 7.14588 7.44229 7.55211 7.60177 8.10056 8.35135 8.64772 9.17499 9.88782 10.36514 11.19486 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.027831 B = 0.002759 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.847401 B =10147.338829 C =10461.902794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.610 5.610 3 C 0.515 3.485 4 O -0.521 6.521 5 C -0.066 4.066 6 C 0.087 3.913 7 C -0.255 4.255 8 S 0.105 5.895 9 C 0.028 3.972 10 N -0.443 5.443 11 C 0.147 3.853 12 H 0.106 0.894 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.137 3.863 16 N -0.587 5.587 17 C -0.348 4.348 18 H 0.049 0.951 19 C -0.021 4.021 20 N -0.901 5.901 21 Si 1.062 2.938 22 H -0.293 1.293 23 H -0.292 1.292 24 H -0.290 1.290 25 C 0.136 3.864 26 C -0.133 4.133 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.177 0.823 33 H 0.199 0.801 34 H 0.044 0.956 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.019 0.981 40 H 0.270 0.730 41 H 0.027 0.973 42 H 0.061 0.939 43 H 0.044 0.956 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.710 22.839 -0.820 24.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.344 5.344 3 C 0.301 3.699 4 O -0.396 6.396 5 C -0.108 4.108 6 C -0.046 4.046 7 C -0.394 4.394 8 S 0.357 5.643 9 C -0.271 4.271 10 N -0.155 5.155 11 C 0.045 3.955 12 H 0.124 0.876 13 C -0.150 4.150 14 C -0.175 4.175 15 C 0.008 3.992 16 N -0.309 5.309 17 C -0.477 4.477 18 H 0.067 0.933 19 C -0.224 4.224 20 N -0.540 5.540 21 Si 0.893 3.107 22 H -0.220 1.220 23 H -0.219 1.219 24 H -0.217 1.217 25 C 0.012 3.988 26 C -0.173 4.173 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.194 0.806 33 H 0.216 0.784 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.037 0.963 40 H 0.081 0.919 41 H 0.046 0.954 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.232 21.954 -0.033 23.447 hybrid contribution -1.184 0.750 -0.782 1.605 sum -9.416 22.704 -0.816 24.593 Atomic orbital electron populations 1.21750 0.80222 1.03005 1.01741 1.48051 1.06655 1.06166 1.73524 1.20216 0.88152 0.84694 0.76804 1.90735 1.13666 1.86889 1.48315 1.20286 0.96150 0.89315 1.05095 1.19684 0.96366 0.96601 0.91966 1.26773 1.05797 1.00202 1.06604 1.83955 1.25851 1.28342 1.26138 1.28425 1.03524 0.94145 1.01005 1.66037 1.04176 1.18752 1.26550 1.20464 0.97961 0.81034 0.96015 0.87647 1.21747 0.99497 0.97440 0.96356 1.22640 0.97024 0.98252 0.99542 1.20399 0.93791 0.97330 0.87634 1.43955 1.70831 1.05195 1.10915 1.19841 1.05430 0.82575 1.39870 0.93290 1.25841 0.94241 1.01733 1.00620 1.70719 1.09729 1.28606 1.44957 0.83559 0.74829 0.75881 0.76475 1.22020 1.21868 1.21681 1.20339 0.94936 0.91783 0.91777 1.21286 1.01604 0.97884 0.96556 0.92665 0.91528 0.90623 0.87442 0.87328 0.80551 0.78442 0.93739 0.91563 0.93421 0.92520 0.90960 0.96276 0.91864 0.95443 0.92005 0.93765 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 9.44 59.84 0.57 1.32 16 2 N -0.61 -8.75 2.64 -175.87 -0.46 -9.22 16 3 C 0.51 7.84 7.64 -10.99 -0.08 7.76 16 4 O -0.52 -10.40 14.82 5.55 0.08 -10.31 16 5 C -0.07 -0.69 4.75 -29.04 -0.14 -0.83 16 6 C 0.09 1.04 5.63 -84.22 -0.47 0.57 16 7 C -0.25 -2.40 11.07 29.12 0.32 -2.07 16 8 S 0.10 0.88 23.22 -107.50 -2.50 -1.62 16 9 C 0.03 0.29 12.23 51.59 0.63 0.92 16 10 N -0.44 -6.12 9.70 -11.90 -0.12 -6.23 16 11 C 0.15 2.61 2.30 -69.60 -0.16 2.45 16 12 H 0.11 2.24 5.11 -51.93 -0.27 1.97 16 13 C -0.11 -2.03 4.82 -27.19 -0.13 -2.16 16 14 C -0.13 -2.79 6.40 -25.02 -0.16 -2.95 16 15 C 0.14 3.31 4.46 -4.92 -0.02 3.29 16 16 N -0.59 -14.67 2.37 -175.40 -0.42 -15.08 16 17 C -0.35 -9.62 9.43 -15.06 -0.14 -9.77 16 18 H 0.05 1.37 7.98 -52.49 -0.42 0.95 16 19 C -0.02 -0.59 4.82 -17.43 -0.08 -0.68 16 20 N -0.90 -27.13 12.18 55.49 0.68 -26.46 16 21 Si 1.06 25.37 30.01 -169.99 -5.10 20.27 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 C 0.14 2.91 6.12 -5.20 -0.03 2.88 16 26 C -0.13 -2.38 4.00 -30.19 -0.12 -2.51 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.45 6.44 -51.93 -0.33 0.12 16 29 H 0.08 0.76 7.16 -51.93 -0.37 0.39 16 30 H 0.11 0.77 7.29 -51.93 -0.38 0.39 16 31 H 0.11 0.95 8.11 -51.93 -0.42 0.53 16 32 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.20 1.45 8.06 -52.49 -0.42 1.02 16 34 H 0.04 0.74 7.83 -51.93 -0.41 0.33 16 35 H 0.07 1.25 6.82 -51.93 -0.35 0.89 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.07 1.99 5.13 -51.93 -0.27 1.73 16 39 H 0.02 0.46 6.89 -51.93 -0.36 0.10 16 40 H 0.27 8.28 7.25 -40.82 -0.30 7.98 16 41 H 0.03 0.60 8.13 -51.93 -0.42 0.17 16 42 H 0.06 1.31 7.99 -51.92 -0.42 0.90 16 43 H 0.04 0.71 8.02 -51.93 -0.42 0.30 16 44 H 0.06 1.13 6.71 -51.93 -0.35 0.78 16 LS Contribution 356.74 15.07 5.38 5.38 Total: -1.00 -34.80 356.74 -8.87 -43.66 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.38 Total: 1.39 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -0.03 Total: -1.77 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: -0.32 Total: -56.99 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.10 Total: 20.27 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.50 Total: -1.62 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.80 -8.87 -43.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948833658.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.475 kcal (2) G-P(sol) polarization free energy of solvation -34.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds