Wall clock time and date at job start Tue Mar 31 2020 13:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 120.00264 * 2 1 4 4 O 1.21283 * 119.99750 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99928 * 0.28128 * 3 2 1 6 6 C 1.50700 * 109.46869 * 179.72354 * 5 3 2 7 7 C 1.33642 * 122.74930 * 124.73211 * 6 5 3 8 8 S 1.76195 * 107.92225 * 179.97438 * 7 6 5 9 9 C 1.70972 * 90.28293 * 0.27603 * 8 7 6 10 10 N 1.29029 * 110.16969 * 359.83835 * 9 8 7 11 11 C 1.46499 * 119.99537 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.47359 * 59.99712 * 11 2 1 13 13 C 1.53000 * 109.46927 * 179.97438 * 12 11 2 14 14 C 1.53000 * 109.47415 * 60.00185 * 13 12 11 15 15 N 1.46504 * 109.47431 * 180.02562 * 14 13 12 16 16 C 1.36936 * 119.99395 * 274.99764 * 15 14 13 17 17 H 1.07994 * 120.00441 * 0.02562 * 16 15 14 18 18 C 1.38816 * 119.99419 * 179.97438 * 16 15 14 19 19 N 1.31625 * 119.99541 * 179.97438 * 18 16 15 20 20 Si 1.86793 * 120.00198 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47355 * 89.99819 * 20 18 16 22 22 H 1.48504 * 109.47330 * 209.99827 * 20 18 16 23 23 H 1.48507 * 109.47193 * 329.99525 * 20 18 16 24 24 C 1.53000 * 109.46922 * 299.99818 * 14 13 12 25 25 C 1.53000 * 109.47264 * 299.99724 * 11 2 1 26 26 H 1.08998 * 109.46921 * 89.99095 * 1 2 3 27 27 H 1.08994 * 109.46996 * 209.99677 * 1 2 3 28 28 H 1.09001 * 109.46578 * 329.99540 * 1 2 3 29 29 H 1.09004 * 109.46965 * 299.72211 * 5 3 2 30 30 H 1.08994 * 109.46990 * 59.72065 * 5 3 2 31 31 H 1.07998 * 126.03829 * 0.03637 * 7 6 5 32 32 H 1.08003 * 124.91424 * 179.84360 * 9 8 7 33 33 H 1.09005 * 109.47049 * 179.97438 * 11 2 1 34 34 H 1.08995 * 109.47095 * 299.99931 * 12 11 2 35 35 H 1.09000 * 109.47156 * 60.00210 * 12 11 2 36 36 H 1.09005 * 109.47331 * 299.99918 * 13 12 11 37 37 H 1.09002 * 109.46807 * 180.02562 * 13 12 11 38 38 H 1.08995 * 109.47131 * 59.99668 * 14 13 12 39 39 H 0.96996 * 120.00165 * 94.99612 * 15 14 13 40 40 H 0.97004 * 119.99454 * 179.97438 * 19 18 16 41 41 H 1.09005 * 109.47048 * 299.99792 * 24 14 13 42 42 H 1.08998 * 109.47339 * 180.02562 * 24 14 13 43 43 H 1.09007 * 109.46721 * 300.00461 * 25 11 2 44 44 H 1.08995 * 109.47131 * 60.00106 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 0.0064 6 6 2.3649 3.6176 0.0119 7 6 2.3480 4.5878 -0.9071 8 16 3.6498 5.7139 -0.5307 9 6 4.0924 4.7640 0.8201 10 7 3.3122 3.7412 0.9196 11 6 2.1974 -1.2688 -0.0006 12 6 1.8277 -2.0706 -1.2501 13 6 2.5932 -3.3953 -1.2509 14 6 2.2241 -4.1984 -0.0020 15 7 2.9575 -5.4667 -0.0025 16 6 2.4592 -6.5454 -0.6831 17 1 1.5259 -6.4611 -1.2198 18 6 3.1544 -7.7469 -0.6840 19 7 2.6751 -8.7839 -1.3378 20 14 4.7690 -7.8925 0.2438 21 1 4.5019 -8.3340 1.6361 22 1 5.6405 -8.8869 -0.4322 23 1 5.4486 -6.5722 0.2649 24 6 2.5938 -3.3966 1.2475 25 6 1.8278 -2.0716 1.2483 26 1 -0.3633 0.0002 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3632 0.8900 0.5139 29 1 0.7588 2.5344 -0.8833 30 1 0.7590 2.5257 0.8966 31 1 1.6577 4.6679 -1.7338 32 1 4.9072 4.9878 1.4929 33 1 3.2692 -1.0697 -0.0009 34 1 0.7561 -2.2697 -1.2502 35 1 2.0911 -1.4987 -2.1399 36 1 3.6648 -3.1958 -1.2511 37 1 2.3301 -3.9663 -2.1414 38 1 1.1526 -4.3979 -0.0018 39 1 3.7960 -5.5423 0.4792 40 1 3.1611 -9.6234 -1.3387 41 1 3.6655 -3.1971 1.2473 42 1 2.3314 -3.9689 2.1373 43 1 2.0912 -1.5003 2.1386 44 1 0.7562 -2.2707 1.2483 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964014973.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:56 Heat of formation + Delta-G solvation = 21.616439 kcal Electronic energy + Delta-G solvation = -24918.649519 eV Core-core repulsion = 21384.112155 eV Total energy + Delta-G solvation = -3534.537363 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.68217 -39.63617 -37.94349 -35.49391 -33.58466 -32.42346 -31.07689 -30.46132 -28.97547 -27.76429 -26.74760 -25.18755 -23.36163 -22.34380 -21.32883 -20.02089 -19.57336 -19.25432 -18.15924 -17.56930 -17.11199 -16.36088 -16.07195 -15.48623 -15.06394 -14.63540 -14.31701 -14.01375 -13.85164 -13.60323 -13.48219 -13.41758 -13.24099 -12.89072 -12.65599 -12.53252 -12.41582 -12.11264 -11.91489 -11.76599 -11.66555 -10.95873 -10.82559 -10.76492 -10.63674 -10.25217 -10.12682 -9.91897 -9.85405 -9.74299 -9.66957 -9.54861 -9.13281 -8.87874 -8.61875 -7.23525 -5.74771 -3.09671 0.41969 1.09448 1.41339 2.44949 2.58323 2.99380 3.40429 3.44194 3.47966 3.86191 4.41157 4.55809 4.61952 4.78324 4.87405 4.92173 4.94521 5.00427 5.05561 5.15071 5.25484 5.34599 5.44277 5.49054 5.54514 5.61644 5.65902 5.76512 5.79935 5.83879 5.98537 6.17581 6.23584 6.25179 6.32821 6.49267 6.60826 6.63478 6.90955 7.05555 7.31658 7.47763 8.02082 8.14290 8.44790 9.23732 9.96710 10.16974 11.43660 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.027995 B = 0.002297 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.924251 B =12186.446966 C =12590.950285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.612 5.612 3 C 0.516 3.484 4 O -0.522 6.522 5 C -0.066 4.066 6 C 0.084 3.916 7 C -0.254 4.254 8 S 0.109 5.891 9 C 0.027 3.973 10 N -0.444 5.444 11 C 0.140 3.860 12 C -0.120 4.120 13 C -0.133 4.133 14 C 0.183 3.817 15 N -0.750 5.750 16 C -0.240 4.240 17 H 0.090 0.910 18 C 0.002 3.998 19 N -0.935 5.935 20 Si 0.884 3.116 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.277 1.277 24 C -0.125 4.125 25 C -0.118 4.118 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.178 0.822 32 H 0.199 0.801 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.361 0.639 40 H 0.259 0.741 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.014 31.339 3.128 31.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.346 5.346 3 C 0.303 3.697 4 O -0.397 6.397 5 C -0.108 4.108 6 C -0.049 4.049 7 C -0.393 4.393 8 S 0.361 5.639 9 C -0.272 4.272 10 N -0.156 5.156 11 C 0.038 3.962 12 C -0.159 4.159 13 C -0.174 4.174 14 C 0.074 3.926 15 N -0.392 5.392 16 C -0.370 4.370 17 H 0.108 0.892 18 C -0.193 4.193 19 N -0.583 5.583 20 Si 0.714 3.286 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.203 1.203 24 C -0.164 4.164 25 C -0.157 4.157 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.195 0.805 32 H 0.216 0.784 33 H 0.117 0.883 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.193 0.807 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.012 31.722 3.016 32.117 hybrid contribution 0.545 -0.946 0.507 1.204 sum -3.467 30.776 3.523 31.170 Atomic orbital electron populations 1.21825 0.79884 1.03370 1.02000 1.47963 1.06884 1.05993 1.73743 1.20259 0.88115 0.84770 0.76554 1.90732 1.13706 1.86904 1.48389 1.20281 0.96151 0.89134 1.05245 1.19677 0.96386 0.96695 0.92126 1.26798 1.05775 1.00197 1.06506 1.84000 1.25941 1.28032 1.25924 1.28418 1.03608 0.94006 1.01208 1.66034 1.04155 1.19011 1.26418 1.21222 0.97939 0.81558 0.95493 1.21846 1.00832 0.96813 0.96454 1.22198 0.99533 0.94055 1.01580 1.20199 0.96049 0.85242 0.91150 1.42812 1.25316 1.08602 1.62454 1.19075 1.05622 0.88128 1.24208 0.89244 1.24677 0.98495 0.95893 1.00246 1.69708 1.39935 1.02078 1.46614 0.86550 0.84908 0.77214 0.79890 1.21133 1.21827 1.20272 1.21817 1.00034 0.94837 0.99688 1.21801 1.00744 0.96202 0.96992 0.92403 0.90346 0.91288 0.87327 0.87198 0.80494 0.78446 0.88281 0.91932 0.92539 0.92630 0.91252 0.92729 0.80680 0.93130 0.92178 0.91426 0.92099 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 9.30 59.85 0.56 1.08 16 2 N -0.61 -6.84 2.76 -173.93 -0.48 -7.32 16 3 C 0.52 6.49 7.64 -10.98 -0.08 6.41 16 4 O -0.52 -8.96 14.77 5.55 0.08 -8.88 16 5 C -0.07 -0.56 4.75 -29.03 -0.14 -0.70 16 6 C 0.08 0.87 5.64 -84.23 -0.47 0.40 16 7 C -0.25 -2.04 11.07 29.12 0.32 -1.72 16 8 S 0.11 0.78 23.22 -107.50 -2.50 -1.72 16 9 C 0.03 0.24 12.23 51.59 0.63 0.87 16 10 N -0.44 -5.37 9.68 -11.90 -0.12 -5.49 16 11 C 0.14 1.89 2.52 -67.93 -0.17 1.71 16 12 C -0.12 -1.67 5.20 -26.73 -0.14 -1.81 16 13 C -0.13 -2.32 5.50 -26.73 -0.15 -2.47 16 14 C 0.18 3.45 2.77 -67.93 -0.19 3.27 16 15 N -0.75 -17.79 4.92 -53.43 -0.26 -18.05 16 16 C -0.24 -6.77 10.41 -15.06 -0.16 -6.92 16 17 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 18 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 19 N -0.94 -29.52 13.97 55.49 0.78 -28.74 16 20 Si 0.88 22.44 27.74 -169.99 -4.71 17.73 16 21 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 23 H -0.28 -6.67 6.52 56.52 0.37 -6.30 16 24 C -0.12 -1.97 5.39 -26.70 -0.14 -2.11 16 25 C -0.12 -1.54 5.19 -26.70 -0.14 -1.68 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.57 6.43 -51.93 -0.33 0.23 16 28 H 0.07 0.33 6.43 -51.93 -0.33 0.00 16 29 H 0.11 0.59 8.00 -51.93 -0.42 0.18 16 30 H 0.11 0.73 7.40 -51.93 -0.38 0.35 16 31 H 0.18 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.20 1.17 8.06 -52.48 -0.42 0.75 16 33 H 0.10 1.60 6.90 -51.93 -0.36 1.24 16 34 H 0.06 0.80 7.67 -51.93 -0.40 0.40 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 39 H 0.36 8.51 5.66 -40.82 -0.23 8.27 16 40 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 44 H 0.07 0.77 6.66 -51.93 -0.35 0.42 16 LS Contribution 363.61 15.07 5.48 5.48 Total: -1.00 -36.10 363.61 -8.72 -44.82 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.62 Total: 5.86 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -0.37 Total: -3.69 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.08 Total: -59.60 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.08 Total: -8.88 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.71 Total: 17.73 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.50 Total: -1.72 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.10 -8.72 -44.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964014973.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.437 kcal (2) G-P(sol) polarization free energy of solvation -36.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds