Wall clock time and date at job start Tue Mar 31 2020 13:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 120.00264 * 2 1 4 4 O 1.21283 * 119.99750 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99928 * 0.28128 * 3 2 1 6 6 C 1.50700 * 109.46869 * 179.72354 * 5 3 2 7 7 C 1.33642 * 122.74930 * 124.73211 * 6 5 3 8 8 S 1.76195 * 107.92225 * 179.97438 * 7 6 5 9 9 C 1.70972 * 90.28293 * 0.27603 * 8 7 6 10 10 N 1.29029 * 110.16969 * 359.83835 * 9 8 7 11 11 C 1.46499 * 119.99537 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.47359 * 59.99712 * 11 2 1 13 13 C 1.53000 * 109.46927 * 179.97438 * 12 11 2 14 14 C 1.53000 * 109.47415 * 60.00185 * 13 12 11 15 15 N 1.46504 * 109.47431 * 180.02562 * 14 13 12 16 16 C 1.36936 * 119.99395 * 274.99764 * 15 14 13 17 17 H 1.07994 * 120.00441 * 0.02562 * 16 15 14 18 18 C 1.38816 * 119.99419 * 179.97438 * 16 15 14 19 19 N 1.31625 * 119.99541 * 179.97438 * 18 16 15 20 20 Si 1.86793 * 120.00198 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47355 * 89.99819 * 20 18 16 22 22 H 1.48504 * 109.47330 * 209.99827 * 20 18 16 23 23 H 1.48507 * 109.47193 * 329.99525 * 20 18 16 24 24 C 1.53000 * 109.46922 * 299.99818 * 14 13 12 25 25 C 1.53000 * 109.47264 * 299.99724 * 11 2 1 26 26 H 1.08998 * 109.46921 * 89.99095 * 1 2 3 27 27 H 1.08994 * 109.46996 * 209.99677 * 1 2 3 28 28 H 1.09001 * 109.46578 * 329.99540 * 1 2 3 29 29 H 1.09004 * 109.46965 * 299.72211 * 5 3 2 30 30 H 1.08994 * 109.46990 * 59.72065 * 5 3 2 31 31 H 1.07998 * 126.03829 * 0.03637 * 7 6 5 32 32 H 1.08003 * 124.91424 * 179.84360 * 9 8 7 33 33 H 1.09005 * 109.47049 * 179.97438 * 11 2 1 34 34 H 1.08995 * 109.47095 * 299.99931 * 12 11 2 35 35 H 1.09000 * 109.47156 * 60.00210 * 12 11 2 36 36 H 1.09005 * 109.47331 * 299.99918 * 13 12 11 37 37 H 1.09002 * 109.46807 * 180.02562 * 13 12 11 38 38 H 1.08995 * 109.47131 * 59.99668 * 14 13 12 39 39 H 0.96996 * 120.00165 * 94.99612 * 15 14 13 40 40 H 0.97004 * 119.99454 * 179.97438 * 19 18 16 41 41 H 1.09005 * 109.47048 * 299.99792 * 24 14 13 42 42 H 1.08998 * 109.47339 * 180.02562 * 24 14 13 43 43 H 1.09007 * 109.46721 * 300.00461 * 25 11 2 44 44 H 1.08995 * 109.47131 * 60.00106 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 0.0064 6 6 2.3649 3.6176 0.0119 7 6 2.3480 4.5878 -0.9071 8 16 3.6498 5.7139 -0.5307 9 6 4.0924 4.7640 0.8201 10 7 3.3122 3.7412 0.9196 11 6 2.1974 -1.2688 -0.0006 12 6 1.8277 -2.0706 -1.2501 13 6 2.5932 -3.3953 -1.2509 14 6 2.2241 -4.1984 -0.0020 15 7 2.9575 -5.4667 -0.0025 16 6 2.4592 -6.5454 -0.6831 17 1 1.5259 -6.4611 -1.2198 18 6 3.1544 -7.7469 -0.6840 19 7 2.6751 -8.7839 -1.3378 20 14 4.7690 -7.8925 0.2438 21 1 4.5019 -8.3340 1.6361 22 1 5.6405 -8.8869 -0.4322 23 1 5.4486 -6.5722 0.2649 24 6 2.5938 -3.3966 1.2475 25 6 1.8278 -2.0716 1.2483 26 1 -0.3633 0.0002 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3632 0.8900 0.5139 29 1 0.7588 2.5344 -0.8833 30 1 0.7590 2.5257 0.8966 31 1 1.6577 4.6679 -1.7338 32 1 4.9072 4.9878 1.4929 33 1 3.2692 -1.0697 -0.0009 34 1 0.7561 -2.2697 -1.2502 35 1 2.0911 -1.4987 -2.1399 36 1 3.6648 -3.1958 -1.2511 37 1 2.3301 -3.9663 -2.1414 38 1 1.1526 -4.3979 -0.0018 39 1 3.7960 -5.5423 0.4792 40 1 3.1611 -9.6234 -1.3387 41 1 3.6655 -3.1971 1.2473 42 1 2.3314 -3.9689 2.1373 43 1 2.0912 -1.5003 2.1386 44 1 0.7562 -2.2707 1.2483 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000964014973.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:55 Heat of formation + Delta-G solvation = -3.211776 kcal Electronic energy + Delta-G solvation = -24919.726151 eV Core-core repulsion = 21384.112155 eV Total energy + Delta-G solvation = -3535.613996 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.50515 -40.48142 -39.17184 -36.78679 -35.15180 -33.44638 -32.74223 -31.72366 -30.06683 -28.72566 -27.58695 -25.91327 -25.12456 -23.62071 -22.69185 -21.16862 -20.61397 -20.08914 -19.54218 -18.80454 -18.03983 -17.28860 -16.85579 -16.71424 -16.29116 -16.12141 -15.43289 -15.15005 -14.98894 -14.73038 -14.57981 -14.36965 -14.20366 -14.08840 -14.01190 -13.57597 -13.40221 -13.14459 -13.12023 -13.00677 -12.88112 -12.42313 -12.28513 -12.10845 -12.05350 -11.95523 -11.78560 -11.50257 -11.14649 -10.90445 -10.79892 -10.52407 -10.33003 -9.73305 -9.54672 -9.30100 -8.01934 -5.34283 -0.17484 0.54774 0.81928 1.37462 1.39478 1.46759 1.70120 1.74946 2.19365 2.48251 3.29006 3.29287 3.56488 3.63721 3.85706 3.87303 4.00701 4.19937 4.26724 4.29530 4.34291 4.36534 4.44419 4.50707 4.53026 4.58517 4.61002 4.71386 4.81311 4.83582 4.90037 5.03981 5.11806 5.14471 5.17964 5.20455 5.24814 5.47910 5.57276 5.64011 5.79127 6.22985 6.47918 6.87322 7.08661 7.26688 7.86222 8.04417 9.19581 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.027995 B = 0.002297 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.924251 B =12186.446966 C =12590.950285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.609 5.609 3 C 0.509 3.491 4 O -0.578 6.578 5 C -0.058 4.058 6 C 0.053 3.947 7 C -0.253 4.253 8 S 0.149 5.851 9 C 0.006 3.994 10 N -0.490 5.490 11 C 0.146 3.854 12 C -0.106 4.106 13 C -0.126 4.126 14 C 0.177 3.823 15 N -0.755 5.755 16 C -0.223 4.223 17 H 0.060 0.940 18 C -0.066 4.066 19 N -0.984 5.984 20 Si 0.952 3.048 21 H -0.277 1.277 22 H -0.298 1.298 23 H -0.257 1.257 24 C -0.117 4.117 25 C -0.107 4.107 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.144 0.856 30 H 0.130 0.870 31 H 0.206 0.794 32 H 0.215 0.785 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.043 0.957 37 H 0.044 0.956 38 H 0.051 0.949 39 H 0.363 0.637 40 H 0.257 0.743 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.047 34.120 3.803 34.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.341 5.341 3 C 0.298 3.702 4 O -0.457 6.457 5 C -0.099 4.099 6 C -0.080 4.080 7 C -0.392 4.392 8 S 0.402 5.598 9 C -0.291 4.291 10 N -0.203 5.203 11 C 0.042 3.958 12 C -0.145 4.145 13 C -0.166 4.166 14 C 0.070 3.930 15 N -0.398 5.398 16 C -0.354 4.354 17 H 0.078 0.922 18 C -0.258 4.258 19 N -0.635 5.635 20 Si 0.780 3.220 21 H -0.203 1.203 22 H -0.224 1.224 23 H -0.182 1.182 24 C -0.156 4.156 25 C -0.146 4.146 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.117 0.883 29 H 0.162 0.838 30 H 0.148 0.852 31 H 0.223 0.777 32 H 0.232 0.768 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.195 0.805 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.089 34.573 3.709 35.142 hybrid contribution 0.801 -1.707 0.225 1.899 sum -4.288 32.866 3.933 33.377 Atomic orbital electron populations 1.22162 0.77045 1.05108 1.03568 1.47995 1.08489 1.04682 1.72952 1.21034 0.87746 0.86170 0.75264 1.90707 1.16296 1.87726 1.50982 1.20376 0.95746 0.86030 1.07788 1.20016 0.97075 0.98049 0.92829 1.27213 1.06028 0.99582 1.06407 1.83816 1.24958 1.26738 1.24299 1.28789 1.03893 0.94033 1.02434 1.66048 1.05529 1.20557 1.28209 1.20910 0.96748 0.82867 0.95268 1.21691 1.01199 0.94635 0.97006 1.22020 0.99394 0.95615 0.99607 1.20442 0.95319 0.83899 0.93353 1.42889 1.25722 1.09227 1.61918 1.19043 1.04211 0.89321 1.22847 0.92196 1.25466 1.02518 0.95720 1.02060 1.69879 1.41827 1.02738 1.49050 0.85449 0.80382 0.77736 0.78452 1.20332 1.22442 1.18237 1.21711 1.00179 0.95854 0.97845 1.21702 1.01461 0.94384 0.97032 0.90887 0.90014 0.88283 0.83844 0.85203 0.77718 0.76811 0.91412 0.90061 0.92348 0.93779 0.93751 0.93057 0.80451 0.93466 0.92754 0.91105 0.91334 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.65 9.30 127.77 1.19 1.84 16 2 N -0.61 -12.14 2.76 -822.58 -2.27 -14.41 16 3 C 0.51 12.00 7.64 87.66 0.67 12.67 16 4 O -0.58 -19.94 14.77 -3.04 -0.04 -19.98 16 5 C -0.06 -0.82 4.75 29.10 0.14 -0.68 16 6 C 0.05 1.00 5.64 41.52 0.23 1.23 16 7 C -0.25 -3.45 11.07 66.78 0.74 -2.71 16 8 S 0.15 1.86 23.22 -56.49 -1.31 0.55 16 9 C 0.01 0.11 12.23 130.65 1.60 1.71 16 10 N -0.49 -11.60 9.68 -191.55 -1.85 -13.46 16 11 C 0.15 3.72 2.52 44.99 0.11 3.84 16 12 C -0.11 -2.81 5.20 30.59 0.16 -2.65 16 13 C -0.13 -4.40 5.50 30.59 0.17 -4.23 16 14 C 0.18 6.62 2.77 44.99 0.12 6.75 16 15 N -0.76 -35.74 4.92 -322.94 -1.59 -37.33 16 16 C -0.22 -12.79 10.41 84.03 0.87 -11.91 16 17 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 18 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 19 N -0.98 -63.75 13.97 21.65 0.30 -63.45 16 20 Si 0.95 46.75 27.74 68.60 1.90 48.65 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 22 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 23 H -0.26 -11.67 6.52 99.48 0.65 -11.02 16 24 C -0.12 -3.54 5.39 30.61 0.17 -3.37 16 25 C -0.11 -2.55 5.19 30.61 0.16 -2.39 16 26 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.08 0.84 6.43 -2.39 -0.02 0.82 16 28 H 0.10 0.47 6.43 -2.39 -0.02 0.46 16 29 H 0.14 0.94 8.00 -2.38 -0.02 0.92 16 30 H 0.13 1.27 7.40 -2.39 -0.02 1.26 16 31 H 0.21 1.38 8.06 -2.91 -0.02 1.36 16 32 H 0.22 2.47 8.06 -2.91 -0.02 2.45 16 33 H 0.07 2.20 6.90 -2.38 -0.02 2.19 16 34 H 0.08 1.86 7.67 -2.39 -0.02 1.85 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.05 1.96 8.08 -2.39 -0.02 1.94 16 39 H 0.36 16.77 5.66 -92.71 -0.52 16.25 16 40 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 41 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 42 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.07 1.58 8.14 -2.38 -0.02 1.57 16 44 H 0.09 1.73 6.66 -2.39 -0.02 1.72 16 Total: -1.00 -82.06 363.61 2.35 -79.70 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.42 Total: 23.15 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 6.80 Total: -3.43 kcal Atomic # 7 Polarization: -123.23 SS G_CDS: -5.41 Total: -128.65 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.04 Total: -19.98 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.90 Total: 48.65 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -1.31 Total: 0.55 kcal Total: -82.06 2.35 -79.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964014973.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.493 kcal (2) G-P(sol) polarization free energy of solvation -82.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds