Wall clock time and date at job start Tue Mar 31 2020 13:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46902 * 110.99854 * 2 1 4 4 C 1.46896 * 111.00305 * 123.95387 * 2 1 3 5 5 C 1.50705 * 109.47182 * 66.04514 * 4 2 1 6 6 C 1.37476 * 123.35589 * 260.22661 * 5 4 2 7 7 C 1.33810 * 115.10465 * 180.29238 * 6 5 4 8 8 S 1.70615 * 110.95320 * 359.72200 * 7 6 5 9 9 C 1.36654 * 123.35214 * 79.99650 * 5 4 2 10 10 C 1.46580 * 125.45269 * 0.02562 * 9 5 4 11 11 O 1.21704 * 120.00314 * 359.71576 * 10 9 5 12 12 N 1.34777 * 119.99656 * 179.71558 * 10 9 5 13 13 C 1.47018 * 125.65083 * 359.95730 * 12 10 9 14 14 C 1.54317 * 107.27559 * 181.09544 * 13 12 10 15 15 C 1.55160 * 102.94328 * 22.19141 * 14 13 12 16 16 H 1.09003 * 111.03421 * 82.58301 * 15 14 13 17 17 N 1.46490 * 111.00678 * 206.42332 * 15 14 13 18 18 C 1.36935 * 120.00121 * 198.64617 * 17 15 14 19 19 H 1.07997 * 120.00139 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00401 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00172 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.46685 * 269.99637 * 22 20 18 24 24 H 1.48494 * 109.47357 * 29.99716 * 22 20 18 25 25 H 1.48502 * 109.47120 * 150.00435 * 22 20 18 26 26 C 1.47429 * 125.64727 * 180.02562 * 12 10 9 27 27 H 1.09005 * 109.47344 * 296.04198 * 1 2 3 28 28 H 1.09003 * 109.47144 * 56.04627 * 1 2 3 29 29 H 1.09004 * 109.46989 * 176.04406 * 1 2 3 30 30 H 1.09004 * 109.46848 * 183.95547 * 3 2 1 31 31 H 1.08996 * 109.47264 * 303.95234 * 3 2 1 32 32 H 1.09001 * 109.46995 * 63.95622 * 3 2 1 33 33 H 1.09001 * 109.47481 * 306.04934 * 4 2 1 34 34 H 1.08999 * 109.47309 * 186.04451 * 4 2 1 35 35 H 1.07998 * 122.44588 * 359.97438 * 6 5 4 36 36 H 1.07994 * 124.52403 * 179.74404 * 7 6 5 37 37 H 1.09003 * 109.87961 * 300.51536 * 13 12 10 38 38 H 1.08999 * 109.88461 * 61.67717 * 13 12 10 39 39 H 1.09002 * 110.72264 * 263.82858 * 14 13 12 40 40 H 1.09000 * 110.72562 * 140.55869 * 14 13 12 41 41 H 0.97000 * 120.00577 * 18.65217 * 17 15 14 42 42 H 0.97001 * 119.99885 * 359.97438 * 21 20 18 43 43 H 1.08995 * 110.36765 * 36.99076 * 26 12 10 44 44 H 1.09007 * 110.45679 * 274.71695 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1375 5 6 1.6369 -2.2204 0.9728 6 6 0.5822 -2.8172 1.6219 7 6 0.4172 -4.1189 1.3596 8 16 1.5953 -4.6731 0.2569 9 6 2.3252 -3.0765 0.1599 10 6 3.4896 -2.7219 -0.6568 11 8 3.9144 -1.5814 -0.6483 12 7 4.0898 -3.6589 -1.4172 13 6 3.6833 -5.0680 -1.5205 14 6 4.6733 -5.7614 -2.4799 15 6 5.9186 -4.8376 -2.4216 16 1 6.5361 -5.0677 -1.5533 17 7 6.6997 -4.9306 -3.6574 18 6 8.0038 -4.5132 -3.6762 19 1 8.4565 -4.1158 -2.7798 20 6 8.7439 -4.6007 -4.8473 21 7 8.1919 -5.0846 -5.9399 22 14 10.5230 -4.0320 -4.8727 23 1 10.5776 -2.5938 -5.2391 24 1 11.1231 -4.2233 -3.5280 25 1 11.2824 -4.8263 -5.8714 26 6 5.2637 -3.4409 -2.2821 27 1 -0.3634 0.4512 0.9234 28 1 -0.3633 0.5740 -0.8525 29 1 -0.3633 -1.0253 -0.0709 30 1 3.0827 1.3432 -0.0709 31 1 1.5897 1.9163 -0.8524 32 1 1.7043 1.8723 0.9233 33 1 1.5611 -0.3873 2.0628 34 1 3.0797 -0.6611 1.1755 35 1 -0.0629 -2.2761 2.2983 36 1 -0.3584 -4.7362 1.7883 37 1 3.7270 -5.5393 -0.5386 38 1 2.6717 -5.1336 -1.9208 39 1 4.2682 -5.7991 -3.4911 40 1 4.9185 -6.7621 -2.1241 41 1 6.2933 -5.2877 -4.4625 42 1 7.2682 -5.3803 -5.9266 43 1 5.9562 -2.7423 -1.8128 44 1 4.9536 -3.0684 -3.2585 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968825253.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:49 Heat of formation + Delta-G solvation = 7.976691 kcal Electronic energy + Delta-G solvation = -25329.888253 eV Core-core repulsion = 21794.759425 eV Total energy + Delta-G solvation = -3535.128827 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.21436 -39.85561 -38.41135 -37.24162 -36.28358 -33.46053 -31.43221 -31.11287 -29.64781 -28.49635 -28.16029 -25.92947 -25.07571 -24.04960 -22.57410 -22.19260 -21.46906 -19.59804 -19.29020 -19.04457 -17.42572 -17.17102 -16.82948 -16.50295 -16.37483 -15.91956 -15.76349 -15.67739 -15.30053 -15.14857 -14.82003 -14.47206 -13.99620 -13.84724 -13.80694 -13.57194 -13.32825 -13.20576 -13.00455 -12.77240 -12.70199 -12.64668 -12.48962 -12.43718 -12.34380 -11.87776 -11.83756 -11.62246 -11.27058 -11.04032 -10.92296 -9.96557 -9.67191 -9.40717 -9.19957 -9.17154 -8.41354 -5.37548 -0.45925 0.52630 1.00611 1.38241 1.58938 1.68474 1.82832 1.86684 2.14702 2.69625 3.18128 3.32780 3.47036 3.50340 3.80404 3.90963 3.94197 4.05973 4.10654 4.22087 4.25580 4.32158 4.39875 4.43604 4.49631 4.51788 4.59149 4.69389 4.72634 4.77162 4.86512 4.96366 4.98593 5.01088 5.05714 5.11361 5.23952 5.33250 5.37922 5.59486 6.06486 6.16650 6.45595 6.49134 7.04424 7.09080 7.94182 8.03825 9.10470 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017338 B = 0.003175 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.593935 B = 8816.231153 C =10009.143906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.556 5.556 3 C 0.035 3.965 4 C 0.117 3.883 5 C -0.027 4.027 6 C -0.153 4.153 7 C -0.231 4.231 8 S 0.250 5.750 9 C -0.281 4.281 10 C 0.591 3.409 11 O -0.556 6.556 12 N -0.616 5.616 13 C 0.096 3.904 14 C -0.122 4.122 15 C 0.171 3.829 16 H 0.062 0.938 17 N -0.734 5.734 18 C -0.337 4.337 19 H 0.064 0.936 20 C -0.097 4.097 21 N -0.972 5.972 22 Si 1.127 2.873 23 H -0.289 1.289 24 H -0.273 1.273 25 H -0.290 1.290 26 C 0.101 3.899 27 H 0.039 0.961 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.038 0.962 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.161 0.839 36 H 0.200 0.800 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.108 0.892 41 H 0.366 0.634 42 H 0.247 0.753 43 H 0.045 0.955 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.556 1.452 18.424 28.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.280 5.280 3 C -0.113 4.113 4 C -0.013 4.013 5 C -0.043 4.043 6 C -0.184 4.184 7 C -0.368 4.368 8 S 0.520 5.480 9 C -0.402 4.402 10 C 0.381 3.619 11 O -0.437 6.437 12 N -0.350 5.350 13 C -0.028 4.028 14 C -0.161 4.161 15 C 0.060 3.940 16 H 0.079 0.921 17 N -0.375 5.375 18 C -0.468 4.468 19 H 0.082 0.918 20 C -0.289 4.289 21 N -0.619 5.619 22 Si 0.952 3.048 23 H -0.216 1.216 24 H -0.198 1.198 25 H -0.216 1.216 26 C -0.025 4.025 27 H 0.057 0.943 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.179 0.821 36 H 0.217 0.783 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.126 0.874 41 H 0.199 0.801 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -19.462 0.680 16.637 25.613 hybrid contribution -1.846 1.843 1.708 3.118 sum -21.308 2.524 18.345 28.230 Atomic orbital electron populations 1.22420 0.86361 1.02264 1.01024 1.61758 1.08664 1.14340 1.43275 1.22266 1.00151 0.87944 1.00963 1.20686 1.00384 0.88440 0.91760 1.19481 0.94261 0.96048 0.94558 1.19967 0.99245 0.94972 1.04168 1.25945 1.06092 1.00213 1.04601 1.83163 1.20228 1.06119 1.38492 1.24285 1.04970 1.00840 1.10096 1.17067 0.82211 0.83793 0.78801 1.90779 1.65918 1.20393 1.66574 1.48393 1.31248 1.10860 1.44491 1.22261 0.99311 0.79995 1.01193 1.22816 0.93489 0.99712 1.00076 1.21385 0.91548 0.91616 0.89421 0.92051 1.42413 1.10334 1.76044 1.08731 1.20370 0.89796 1.38190 0.98444 0.91768 1.27121 1.09342 1.00734 0.91674 1.70964 1.14577 1.46876 1.29485 0.82632 0.70632 0.75734 0.75832 1.21571 1.19817 1.21617 1.22866 0.86217 1.01014 0.92400 0.94300 0.91292 0.91641 0.93072 0.90903 0.94327 0.92453 0.91218 0.82138 0.78282 0.88763 0.89109 0.90301 0.87404 0.80089 0.94228 0.93672 0.93769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.33 127.69 1.19 1.71 16 2 N -0.56 -14.19 4.84 -953.47 -4.61 -18.80 16 3 C 0.03 0.79 9.57 127.69 1.22 2.02 16 4 C 0.12 2.89 4.35 85.56 0.37 3.26 16 5 C -0.03 -0.62 4.55 -20.41 -0.09 -0.72 16 6 C -0.15 -2.46 9.16 21.08 0.19 -2.27 16 7 C -0.23 -3.02 10.92 66.81 0.73 -2.29 16 8 S 0.25 4.22 18.43 -56.49 -1.04 3.18 16 9 C -0.28 -7.46 6.38 24.08 0.15 -7.31 16 10 C 0.59 20.68 7.81 86.42 0.68 21.35 16 11 O -0.56 -23.37 14.59 -4.36 -0.06 -23.44 16 12 N -0.62 -20.59 3.33 -816.64 -2.72 -23.31 16 13 C 0.10 2.35 5.17 86.73 0.45 2.80 16 14 C -0.12 -3.43 6.58 31.78 0.21 -3.22 16 15 C 0.17 6.69 3.68 46.38 0.17 6.86 16 16 H 0.06 2.46 8.13 -2.39 -0.02 2.44 16 17 N -0.73 -36.22 5.27 -316.42 -1.67 -37.89 16 18 C -0.34 -18.88 9.98 84.03 0.84 -18.04 16 19 H 0.06 3.57 7.83 -2.91 -0.02 3.55 16 20 C -0.10 -5.60 5.50 84.86 0.47 -5.14 16 21 N -0.97 -60.18 13.70 21.65 0.30 -59.89 16 22 Si 1.13 52.43 29.92 68.60 2.05 54.49 16 23 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 26 C 0.10 4.09 6.60 86.85 0.57 4.66 16 27 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.07 1.23 8.12 -2.39 -0.02 1.21 16 29 H 0.06 1.24 6.70 -2.39 -0.02 1.23 16 30 H 0.05 1.38 8.12 -2.39 -0.02 1.36 16 31 H 0.07 1.52 8.12 -2.39 -0.02 1.50 16 32 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 1.13 8.08 -2.39 -0.02 1.11 16 34 H 0.07 2.15 6.58 -2.39 -0.02 2.14 16 35 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.20 1.21 8.06 -2.91 -0.02 1.19 16 37 H 0.09 1.88 6.83 -2.39 -0.02 1.87 16 38 H 0.09 1.88 6.99 -2.39 -0.02 1.86 16 39 H 0.08 2.23 8.00 -2.39 -0.02 2.21 16 40 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.37 18.50 6.54 -92.71 -0.61 17.89 16 42 H 0.25 15.10 6.77 -92.71 -0.63 14.47 16 43 H 0.04 2.03 8.04 -2.39 -0.02 2.01 16 44 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 Total: -1.00 -74.50 364.50 -0.07 -74.56 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: 0.54 Total: 27.42 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 7.15 Total: 3.67 kcal Atomic # 7 Polarization: -131.18 SS G_CDS: -8.70 Total: -139.88 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.06 Total: -23.44 kcal Atomic # 14 Polarization: 52.43 SS G_CDS: 2.05 Total: 54.49 kcal Atomic # 16 Polarization: 4.22 SS G_CDS: -1.04 Total: 3.18 kcal Total: -74.50 -0.07 -74.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968825253.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.541 kcal (2) G-P(sol) polarization free energy of solvation -74.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds