Wall clock time and date at job start Tue Mar 31 2020 14:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.35279 * 126.70806 * 2 1 4 4 C 1.41933 * 103.96031 * 179.97438 * 3 2 1 5 5 O 1.35708 * 126.87770 * 179.97438 * 4 3 2 6 6 C 1.42895 * 117.00094 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47385 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00029 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00229 * 180.02562 * 7 6 5 10 10 C 1.46933 * 120.63024 * 180.02562 * 9 7 6 11 11 C 1.53193 * 108.88959 * 126.34195 * 10 9 7 12 12 C 1.53354 * 109.15017 * 54.58075 * 11 10 9 13 13 N 1.46503 * 109.41545 * 178.67385 * 12 11 10 14 14 C 1.46498 * 120.00180 * 60.12755 * 13 12 11 15 15 C 1.36932 * 119.99650 * 240.12329 * 13 12 11 16 16 H 1.08003 * 120.00328 * 22.99743 * 15 13 12 17 17 C 1.38812 * 120.00148 * 203.00586 * 15 13 12 18 18 N 1.31621 * 119.99939 * 11.63254 * 17 15 13 19 19 Si 1.86795 * 120.00335 * 191.63921 * 17 15 13 20 20 H 1.48504 * 109.47461 * 89.99368 * 19 17 15 21 21 H 1.48495 * 109.47415 * 209.99324 * 19 17 15 22 22 H 1.48508 * 109.47036 * 329.99492 * 19 17 15 23 23 C 1.53043 * 109.60448 * 298.70872 * 12 11 10 24 24 C 1.46925 * 120.62807 * 0.02562 * 9 7 6 25 25 N 1.30611 * 106.24250 * 0.23929 * 4 3 2 26 26 O 1.20920 * 111.49852 * 359.57853 * 25 4 3 27 27 H 1.08998 * 109.47561 * 89.99485 * 1 2 3 28 28 H 1.09004 * 109.47042 * 209.99869 * 1 2 3 29 29 H 1.09001 * 109.47379 * 329.99553 * 1 2 3 30 30 H 1.07999 * 128.01725 * 359.96801 * 3 2 1 31 31 H 1.09006 * 109.46742 * 60.00564 * 6 5 4 32 32 H 1.08998 * 109.47411 * 300.00721 * 6 5 4 33 33 H 1.08996 * 109.58609 * 246.19801 * 10 9 7 34 34 H 1.09000 * 109.58518 * 6.48128 * 10 9 7 35 35 H 1.09008 * 109.49355 * 174.65758 * 11 10 9 36 36 H 1.08996 * 109.50174 * 294.75300 * 11 10 9 37 37 H 1.08991 * 109.43522 * 58.75474 * 12 11 10 38 38 H 1.08996 * 109.47164 * 93.84704 * 14 13 12 39 39 H 1.09004 * 109.46701 * 213.84861 * 14 13 12 40 40 H 1.09005 * 109.46870 * 333.84641 * 14 13 12 41 41 H 0.96999 * 120.00018 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.49534 * 301.42555 * 23 12 11 43 43 H 1.09001 * 109.52461 * 181.34447 * 23 12 11 44 44 H 1.08997 * 109.58651 * 353.37512 * 24 9 7 45 45 H 1.09000 * 109.58548 * 113.66296 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3155 1.0845 0.0000 4 6 3.6244 0.5357 0.0006 5 8 4.7952 1.2219 0.0004 6 6 5.9987 0.4515 0.0017 7 6 7.1878 1.3773 0.0006 8 8 7.0211 2.5786 -0.0007 9 7 8.4366 0.8703 0.0010 10 6 9.6058 1.7601 0.0004 11 6 10.5206 1.3778 1.1683 12 6 10.8624 -0.1141 1.0720 13 7 11.7628 -0.4791 2.1685 14 6 11.3331 -0.3049 3.5582 15 6 13.0061 -0.9833 1.8944 16 1 13.4740 -0.7787 0.9427 17 6 13.6651 -1.7574 2.8395 18 7 13.0168 -2.1986 3.8967 19 14 15.4719 -2.1729 2.6114 20 1 16.3058 -1.1244 3.2521 21 1 15.7607 -3.4872 3.2392 22 1 15.7857 -2.2373 1.1612 23 6 9.5790 -0.9422 1.1690 24 6 8.6546 -0.5827 0.0020 25 7 3.4765 -0.7620 -0.0043 26 8 2.3085 -1.0748 0.0005 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 2.0310 2.1264 -0.0005 31 1 6.0281 -0.1780 -0.8877 32 1 6.0273 -0.1763 0.8922 33 1 10.1476 1.6510 -0.9390 34 1 9.2786 2.7935 0.1156 35 1 11.4360 1.9679 1.1216 36 1 10.0088 1.5733 2.1105 37 1 11.3519 -0.3132 0.1188 38 1 10.9019 -1.2365 3.9246 39 1 12.1919 -0.0354 4.1729 40 1 10.5857 0.4868 3.6108 41 1 13.4774 -2.7392 4.5573 42 1 9.0762 -0.7249 2.1114 43 1 9.8257 -2.0030 1.1244 44 1 7.7000 -1.0953 0.1207 45 1 9.1165 -0.8835 -0.9384 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985488008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:42 Heat of formation + Delta-G solvation = 25.087828 kcal Electronic energy + Delta-G solvation = -27318.852944 eV Core-core repulsion = 23341.713241 eV Total energy + Delta-G solvation = -3977.139704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.16726 -40.37630 -38.86876 -37.41163 -35.12775 -34.16902 -32.85080 -32.32398 -31.10407 -29.93720 -28.66058 -27.97635 -26.02344 -24.82683 -23.69744 -22.98236 -22.29595 -21.48473 -19.93050 -18.71812 -18.17715 -18.11060 -17.17248 -16.82691 -16.75065 -16.34946 -15.87221 -15.07181 -14.70954 -14.49855 -14.23792 -13.94248 -13.88162 -13.70338 -13.67196 -13.44677 -13.12997 -12.98498 -12.82207 -12.41330 -12.34307 -11.90775 -11.65408 -11.60063 -11.38268 -11.03053 -10.87406 -10.81576 -10.39859 -10.25439 -10.21547 -9.90516 -9.83494 -9.80189 -9.61261 -9.46678 -8.63801 -8.53376 -6.77797 -5.74165 -3.21007 1.10929 1.99599 2.11068 2.48021 2.78429 3.22466 3.36414 3.42810 3.43924 3.90466 4.26776 4.44651 4.46076 4.61636 4.79432 4.82019 4.87153 4.93588 4.99802 5.19619 5.20344 5.30054 5.32241 5.36541 5.44169 5.54860 5.58220 5.66684 5.84218 5.94925 6.10367 6.20436 6.31337 6.44716 6.52144 6.72148 6.77664 6.92678 6.94204 7.34097 7.38498 7.71326 7.78945 7.95650 8.06521 8.38159 9.21872 9.85104 10.34583 11.30463 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.025334 B = 0.002307 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.976652 B =12134.862662 C =12772.883140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.010 4.010 3 C -0.233 4.233 4 C 0.214 3.786 5 O -0.257 6.257 6 C 0.047 3.953 7 C 0.519 3.481 8 O -0.528 6.528 9 N -0.600 5.600 10 C 0.117 3.883 11 C -0.147 4.147 12 C 0.179 3.821 13 N -0.596 5.596 14 C 0.164 3.836 15 C -0.255 4.255 16 H 0.068 0.932 17 C 0.001 3.999 18 N -0.907 5.907 19 Si 0.905 3.095 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.280 1.280 23 C -0.146 4.146 24 C 0.104 3.896 25 N -0.410 5.410 26 O 0.099 5.901 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.179 0.821 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.027 0.973 39 H 0.042 0.958 40 H -0.003 1.003 41 H 0.252 0.748 42 H 0.061 0.939 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.082 4.016 -9.062 25.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 C -0.255 4.255 4 C 0.016 3.984 5 O -0.162 6.162 6 C -0.032 4.032 7 C 0.305 3.695 8 O -0.404 6.404 9 N -0.335 5.335 10 C -0.005 4.005 11 C -0.187 4.187 12 C 0.071 3.929 13 N -0.317 5.317 14 C 0.019 3.981 15 C -0.384 4.384 16 H 0.086 0.914 17 C -0.197 4.197 18 N -0.552 5.552 19 Si 0.735 3.265 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.205 1.205 23 C -0.187 4.187 24 C -0.019 4.019 25 N -0.138 5.138 26 O 0.039 5.961 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.196 0.804 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.045 0.955 39 H 0.061 0.939 40 H 0.016 0.984 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.150 3.832 -8.904 24.178 hybrid contribution 0.899 0.140 0.102 0.915 sum -21.252 3.973 -8.801 23.343 Atomic orbital electron populations 1.20380 0.83489 1.04969 1.04380 1.24356 0.96499 0.85611 1.00909 1.21802 0.88282 1.01709 1.13687 1.22062 0.88466 0.88044 0.99868 1.86270 1.10039 1.30892 1.89015 1.22561 0.82218 0.93672 1.04721 1.19797 0.83690 0.88670 0.77342 1.90723 1.85225 1.15115 1.49345 1.48070 1.04934 1.08082 1.72368 1.21705 0.85018 0.94443 0.99347 1.22548 0.98806 1.00021 0.97349 1.20345 0.89323 0.90394 0.92878 1.43947 1.13522 1.73930 1.00319 1.20748 0.96444 0.95969 0.84937 1.19225 0.91923 1.25233 1.02044 0.91419 1.25043 0.98668 0.97777 0.98227 1.70068 1.34621 1.37908 1.12652 0.86246 0.85197 0.77426 0.77591 1.21541 1.21780 1.20511 1.22520 0.97305 1.02149 0.96677 1.21960 1.00541 0.78793 1.00627 1.74184 0.97890 1.14207 1.27485 1.84799 1.10294 1.31969 1.69067 0.89089 0.89484 0.88769 0.80400 0.88630 0.88415 0.91342 0.89434 0.90574 0.91942 0.91779 0.95466 0.93883 0.98440 0.93767 0.92065 0.90229 0.90696 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.22 10.45 36.00 0.38 0.16 16 2 C -0.01 -0.08 7.48 -35.37 -0.26 -0.34 16 3 C -0.23 -2.19 11.11 -39.22 -0.44 -2.62 16 4 C 0.21 2.71 8.01 -16.66 -0.13 2.58 16 5 O -0.26 -3.72 9.74 -38.74 -0.38 -4.10 16 6 C 0.05 0.61 4.49 36.00 0.16 0.77 16 7 C 0.52 7.95 7.77 -10.99 -0.09 7.86 16 8 O -0.53 -9.89 15.91 -14.35 -0.23 -10.12 16 9 N -0.60 -8.59 2.97 -172.79 -0.51 -9.10 16 10 C 0.12 1.71 6.42 -3.71 -0.02 1.69 16 11 C -0.15 -2.49 5.35 -26.45 -0.14 -2.63 16 12 C 0.18 3.43 2.55 -67.72 -0.17 3.25 16 13 N -0.60 -14.39 2.81 -173.25 -0.49 -14.88 16 14 C 0.16 3.99 8.03 59.85 0.48 4.47 16 15 C -0.25 -6.81 9.59 -15.06 -0.14 -6.95 16 16 H 0.07 1.77 7.82 -52.48 -0.41 1.35 16 17 C 0.00 0.03 5.12 -17.43 -0.09 -0.06 16 18 N -0.91 -26.15 10.64 55.49 0.59 -25.56 16 19 Si 0.91 21.62 29.57 -169.99 -5.03 16.60 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C -0.15 -2.44 5.34 -26.63 -0.14 -2.58 16 24 C 0.10 1.34 6.34 -3.73 -0.02 1.32 16 25 N -0.41 -5.16 11.54 30.38 0.35 -4.81 16 26 O 0.10 1.03 11.19 17.07 0.19 1.22 16 27 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.10 1.06 7.94 -51.93 -0.41 0.65 16 32 H 0.10 1.18 7.69 -51.93 -0.40 0.78 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 1.33 7.00 -51.93 -0.36 0.97 16 35 H 0.08 1.31 8.14 -51.92 -0.42 0.89 16 36 H 0.06 1.13 6.73 -51.93 -0.35 0.78 16 37 H 0.06 1.23 7.86 -51.93 -0.41 0.82 16 38 H 0.03 0.71 7.42 -51.93 -0.39 0.33 16 39 H 0.04 1.14 7.22 -51.93 -0.37 0.77 16 40 H 0.00 -0.06 6.47 -51.93 -0.34 -0.40 16 41 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.06 1.09 7.72 -51.93 -0.40 0.69 16 43 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 44 H 0.07 0.81 5.93 -51.93 -0.31 0.50 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 366.90 15.07 5.53 5.53 Total: -1.00 -33.48 366.90 -7.27 -40.76 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -6.67 Total: -2.44 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -0.64 Total: 6.90 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.06 Total: -54.36 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.41 Total: -12.99 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.48 -7.27 -40.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985488008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.843 kcal (2) G-P(sol) polarization free energy of solvation -33.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds