Wall clock time and date at job start Tue Mar 31 2020 14:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.35279 * 126.70806 * 2 1 4 4 C 1.41933 * 103.96031 * 179.97438 * 3 2 1 5 5 O 1.35708 * 126.87770 * 179.97438 * 4 3 2 6 6 C 1.42895 * 117.00094 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47385 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00029 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00229 * 180.02562 * 7 6 5 10 10 C 1.46933 * 120.63024 * 180.02562 * 9 7 6 11 11 C 1.53193 * 108.88959 * 126.34195 * 10 9 7 12 12 C 1.53354 * 109.15017 * 54.58075 * 11 10 9 13 13 N 1.46503 * 109.41545 * 178.67385 * 12 11 10 14 14 C 1.46498 * 120.00180 * 60.12755 * 13 12 11 15 15 C 1.36932 * 119.99650 * 240.12329 * 13 12 11 16 16 H 1.08003 * 120.00328 * 22.99743 * 15 13 12 17 17 C 1.38812 * 120.00148 * 203.00586 * 15 13 12 18 18 N 1.31621 * 119.99939 * 11.63254 * 17 15 13 19 19 Si 1.86795 * 120.00335 * 191.63921 * 17 15 13 20 20 H 1.48504 * 109.47461 * 89.99368 * 19 17 15 21 21 H 1.48495 * 109.47415 * 209.99324 * 19 17 15 22 22 H 1.48508 * 109.47036 * 329.99492 * 19 17 15 23 23 C 1.53043 * 109.60448 * 298.70872 * 12 11 10 24 24 C 1.46925 * 120.62807 * 0.02562 * 9 7 6 25 25 N 1.30611 * 106.24250 * 0.23929 * 4 3 2 26 26 O 1.20920 * 111.49852 * 359.57853 * 25 4 3 27 27 H 1.08998 * 109.47561 * 89.99485 * 1 2 3 28 28 H 1.09004 * 109.47042 * 209.99869 * 1 2 3 29 29 H 1.09001 * 109.47379 * 329.99553 * 1 2 3 30 30 H 1.07999 * 128.01725 * 359.96801 * 3 2 1 31 31 H 1.09006 * 109.46742 * 60.00564 * 6 5 4 32 32 H 1.08998 * 109.47411 * 300.00721 * 6 5 4 33 33 H 1.08996 * 109.58609 * 246.19801 * 10 9 7 34 34 H 1.09000 * 109.58518 * 6.48128 * 10 9 7 35 35 H 1.09008 * 109.49355 * 174.65758 * 11 10 9 36 36 H 1.08996 * 109.50174 * 294.75300 * 11 10 9 37 37 H 1.08991 * 109.43522 * 58.75474 * 12 11 10 38 38 H 1.08996 * 109.47164 * 93.84704 * 14 13 12 39 39 H 1.09004 * 109.46701 * 213.84861 * 14 13 12 40 40 H 1.09005 * 109.46870 * 333.84641 * 14 13 12 41 41 H 0.96999 * 120.00018 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.49534 * 301.42555 * 23 12 11 43 43 H 1.09001 * 109.52461 * 181.34447 * 23 12 11 44 44 H 1.08997 * 109.58651 * 353.37512 * 24 9 7 45 45 H 1.09000 * 109.58548 * 113.66296 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3155 1.0845 0.0000 4 6 3.6244 0.5357 0.0006 5 8 4.7952 1.2219 0.0004 6 6 5.9987 0.4515 0.0017 7 6 7.1878 1.3773 0.0006 8 8 7.0211 2.5786 -0.0007 9 7 8.4366 0.8703 0.0010 10 6 9.6058 1.7601 0.0004 11 6 10.5206 1.3778 1.1683 12 6 10.8624 -0.1141 1.0720 13 7 11.7628 -0.4791 2.1685 14 6 11.3331 -0.3049 3.5582 15 6 13.0061 -0.9833 1.8944 16 1 13.4740 -0.7787 0.9427 17 6 13.6651 -1.7574 2.8395 18 7 13.0168 -2.1986 3.8967 19 14 15.4719 -2.1729 2.6114 20 1 16.3058 -1.1244 3.2521 21 1 15.7607 -3.4872 3.2392 22 1 15.7857 -2.2373 1.1612 23 6 9.5790 -0.9422 1.1690 24 6 8.6546 -0.5827 0.0020 25 7 3.4765 -0.7620 -0.0043 26 8 2.3085 -1.0748 0.0005 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 2.0310 2.1264 -0.0005 31 1 6.0281 -0.1780 -0.8877 32 1 6.0273 -0.1763 0.8922 33 1 10.1476 1.6510 -0.9390 34 1 9.2786 2.7935 0.1156 35 1 11.4360 1.9679 1.1216 36 1 10.0088 1.5733 2.1105 37 1 11.3519 -0.3132 0.1188 38 1 10.9019 -1.2365 3.9246 39 1 12.1919 -0.0354 4.1729 40 1 10.5857 0.4868 3.6108 41 1 13.4774 -2.7392 4.5573 42 1 9.0762 -0.7249 2.1114 43 1 9.8257 -2.0030 1.1244 44 1 7.7000 -1.0953 0.1207 45 1 9.1165 -0.8835 -0.9384 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985488008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:41 Heat of formation + Delta-G solvation = 3.271905 kcal Electronic energy + Delta-G solvation = -27319.798954 eV Core-core repulsion = 23341.713241 eV Total energy + Delta-G solvation = -3978.085713 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.95572 -41.56194 -39.94938 -38.82803 -36.77922 -34.79117 -34.07066 -33.58035 -32.41279 -31.60958 -29.70629 -28.56555 -28.05023 -26.33038 -24.50138 -24.22893 -23.89384 -22.46832 -21.27040 -19.98781 -19.07472 -18.94251 -18.77575 -18.07586 -17.85596 -17.38663 -17.03672 -16.94177 -15.85736 -15.75763 -15.48642 -15.18327 -15.03807 -14.88837 -14.63996 -14.45773 -14.20351 -13.91991 -13.84422 -13.82889 -13.22919 -13.21465 -13.16576 -12.91970 -12.79458 -12.68090 -12.40142 -12.21578 -12.12196 -12.07567 -11.84926 -11.68694 -11.29674 -11.00861 -10.62774 -10.51950 -10.28914 -9.83142 -8.77491 -7.81684 -5.30115 0.44153 1.12634 1.18395 1.30400 1.46611 1.48089 1.56270 2.07107 2.30985 2.50591 3.08374 3.20224 3.32051 3.58342 3.75262 3.83626 3.87763 3.91834 3.97682 4.03989 4.11922 4.25134 4.34583 4.38634 4.51143 4.64623 4.73501 4.78661 4.79115 4.80326 4.86844 4.91446 4.95047 5.04616 5.21826 5.27836 5.30146 5.46176 5.52617 5.65556 5.70204 5.80099 6.17080 6.34083 6.87124 7.15759 7.21248 7.88260 8.33216 9.21588 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.025334 B = 0.002307 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.976652 B =12134.862662 C =12772.883140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.010 3.990 3 C -0.250 4.250 4 C 0.188 3.812 5 O -0.280 6.280 6 C 0.051 3.949 7 C 0.519 3.481 8 O -0.566 6.566 9 N -0.598 5.598 10 C 0.123 3.877 11 C -0.134 4.134 12 C 0.172 3.828 13 N -0.611 5.611 14 C 0.183 3.817 15 C -0.258 4.258 16 H 0.074 0.926 17 C -0.056 4.056 18 N -0.940 5.940 19 Si 0.968 3.032 20 H -0.290 1.290 21 H -0.297 1.297 22 H -0.266 1.266 23 C -0.136 4.136 24 C 0.112 3.888 25 N -0.432 5.432 26 O 0.092 5.908 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.197 0.803 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.046 0.954 37 H 0.068 0.932 38 H 0.002 0.998 39 H 0.013 0.987 40 H 0.021 0.979 41 H 0.246 0.754 42 H 0.046 0.954 43 H 0.066 0.934 44 H 0.101 0.899 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.839 3.971 -10.915 27.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.054 4.054 3 C -0.271 4.271 4 C -0.009 4.009 5 O -0.186 6.186 6 C -0.027 4.027 7 C 0.307 3.693 8 O -0.446 6.446 9 N -0.331 5.331 10 C 0.001 3.999 11 C -0.174 4.174 12 C 0.066 3.934 13 N -0.333 5.333 14 C 0.038 3.962 15 C -0.388 4.388 16 H 0.092 0.908 17 C -0.251 4.251 18 N -0.587 5.587 19 Si 0.797 3.203 20 H -0.217 1.217 21 H -0.224 1.224 22 H -0.190 1.190 23 C -0.177 4.177 24 C -0.010 4.010 25 N -0.160 5.160 26 O 0.032 5.968 27 H 0.128 0.872 28 H 0.118 0.882 29 H 0.132 0.868 30 H 0.214 0.786 31 H 0.134 0.866 32 H 0.124 0.876 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.020 0.980 39 H 0.031 0.969 40 H 0.039 0.961 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.120 0.880 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -23.927 3.782 -10.797 26.521 hybrid contribution 1.331 0.183 0.658 1.496 sum -22.595 3.965 -10.139 25.081 Atomic orbital electron populations 1.20682 0.79841 1.06570 1.06031 1.25168 0.98097 0.84102 0.98022 1.22176 0.87191 1.03185 1.14592 1.22473 0.88726 0.88643 1.01058 1.86219 1.10851 1.31957 1.89524 1.22550 0.81125 0.92972 1.06013 1.20189 0.84367 0.88440 0.76310 1.90703 1.85788 1.16875 1.51196 1.48117 1.04688 1.08589 1.71735 1.21624 0.84826 0.94282 0.99165 1.22351 0.99050 0.98233 0.97744 1.20592 0.89612 0.91909 0.91318 1.44171 1.14020 1.73925 1.01215 1.20404 0.95425 0.95316 0.85091 1.19585 0.93082 1.24144 1.01963 0.90788 1.25798 1.02476 0.98480 0.98356 1.70234 1.35892 1.39077 1.13524 0.85250 0.80591 0.76489 0.78011 1.21723 1.22429 1.19020 1.22307 0.96701 1.00811 0.97846 1.21994 1.01170 0.78035 0.99799 1.74158 0.99091 1.14346 1.28389 1.84750 1.10076 1.32982 1.69009 0.87168 0.88171 0.86822 0.78615 0.86553 0.87644 0.89051 0.89922 0.90915 0.93510 0.91342 0.98000 0.96861 0.96106 0.94460 0.93518 0.91513 0.88048 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.18 10.45 71.23 0.74 0.56 16 2 C 0.01 0.13 7.48 25.00 0.19 0.31 16 3 C -0.25 -4.35 11.11 22.50 0.25 -4.10 16 4 C 0.19 4.65 8.01 85.79 0.69 5.33 16 5 O -0.28 -7.97 9.74 -71.25 -0.69 -8.66 16 6 C 0.05 1.27 4.49 71.23 0.32 1.59 16 7 C 0.52 15.28 7.77 87.66 0.68 15.96 16 8 O -0.57 -21.03 15.91 16.00 0.25 -20.77 16 9 N -0.60 -15.97 2.97 -818.97 -2.44 -18.41 16 10 C 0.12 3.40 6.42 86.36 0.55 3.95 16 11 C -0.13 -4.40 5.35 30.78 0.16 -4.24 16 12 C 0.17 6.44 2.55 45.12 0.12 6.56 16 13 N -0.61 -29.69 2.81 -702.04 -1.97 -31.66 16 14 C 0.18 9.14 8.03 127.77 1.03 10.17 16 15 C -0.26 -13.76 9.59 84.03 0.81 -12.95 16 16 H 0.07 3.79 7.82 -2.91 -0.02 3.77 16 17 C -0.06 -3.13 5.12 84.86 0.43 -2.69 16 18 N -0.94 -55.58 10.64 21.65 0.23 -55.35 16 19 Si 0.97 44.78 29.57 68.60 2.03 46.81 16 20 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 21 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 C -0.14 -4.42 5.34 30.66 0.16 -4.25 16 24 C 0.11 2.61 6.34 86.35 0.55 3.16 16 25 N -0.43 -10.50 11.54 -172.61 -1.99 -12.49 16 26 O 0.09 1.79 11.19 71.25 0.80 2.59 16 27 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 28 H 0.10 0.05 8.14 -2.39 -0.02 0.04 16 29 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 30 H 0.20 2.46 8.06 -2.91 -0.02 2.44 16 31 H 0.12 2.33 7.94 -2.38 -0.02 2.32 16 32 H 0.11 2.41 7.69 -2.39 -0.02 2.39 16 33 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.08 2.43 7.00 -2.39 -0.02 2.41 16 35 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 36 H 0.05 1.68 6.73 -2.39 -0.02 1.66 16 37 H 0.07 2.50 7.86 -2.39 -0.02 2.48 16 38 H 0.00 0.09 7.42 -2.39 -0.02 0.08 16 39 H 0.01 0.70 7.22 -2.38 -0.02 0.68 16 40 H 0.02 0.91 6.47 -2.38 -0.02 0.90 16 41 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 42 H 0.05 1.64 7.72 -2.38 -0.02 1.62 16 43 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.10 1.89 5.93 -2.39 -0.01 1.88 16 45 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -74.53 366.90 3.89 -70.63 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 1.00 Total: 7.95 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: 6.68 Total: 19.35 kcal Atomic # 7 Polarization: -111.74 SS G_CDS: -6.17 Total: -117.91 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: 0.36 Total: -26.84 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -74.53 3.89 -70.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985488008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.907 kcal (2) G-P(sol) polarization free energy of solvation -74.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds