Wall clock time and date at job start Tue Mar 31 2020 13:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36932 * 120.00170 * 2 1 4 4 H 1.08003 * 120.00328 * 202.99318 * 3 2 1 5 5 C 1.38812 * 120.00148 * 23.00161 * 3 2 1 6 6 N 1.31621 * 119.99939 * 11.63254 * 5 3 2 7 7 Si 1.86795 * 120.00335 * 191.63921 * 5 3 2 8 8 H 1.48504 * 109.47461 * 89.99368 * 7 5 3 9 9 H 1.48495 * 109.47415 * 209.99324 * 7 5 3 10 10 H 1.48508 * 109.47036 * 329.99492 * 7 5 3 11 11 C 1.46503 * 120.00180 * 179.97438 * 2 1 3 12 12 C 1.53354 * 109.41545 * 60.12755 * 11 2 1 13 13 C 1.53193 * 109.15017 * 178.67385 * 12 11 2 14 14 N 1.46933 * 108.88959 * 54.58075 * 13 12 11 15 15 C 1.34776 * 120.62848 * 126.29781 * 14 13 12 16 16 O 1.21284 * 120.00020 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00053 * 180.02562 * 15 14 13 18 18 C 1.52996 * 109.47546 * 180.02562 * 17 15 14 19 19 C 1.50701 * 109.47612 * 179.97438 * 18 17 15 20 20 C 1.33642 * 126.03233 * 89.99622 * 19 18 17 21 21 N 1.31779 * 114.49671 * 180.02562 * 20 19 18 22 22 C 1.29030 * 117.12651 * 0.02562 * 21 20 19 23 23 S 1.70974 * 110.16714 * 359.72118 * 22 21 20 24 24 C 1.46925 * 118.74169 * 306.32145 * 14 13 12 25 25 C 1.53043 * 109.46098 * 300.00478 * 11 2 1 26 26 H 1.08996 * 109.47164 * 273.85130 * 1 2 3 27 27 H 1.09004 * 109.46701 * 33.85287 * 1 2 3 28 28 H 1.09005 * 109.46870 * 153.85067 * 1 2 3 29 29 H 0.96999 * 120.00018 * 180.02562 * 6 5 3 30 30 H 1.08991 * 109.45095 * 180.02562 * 11 2 1 31 31 H 1.09008 * 109.68333 * 58.71391 * 12 11 2 32 32 H 1.08996 * 109.47531 * 298.51792 * 12 11 2 33 33 H 1.08996 * 109.58664 * 294.72504 * 13 12 11 34 34 H 1.09000 * 109.59087 * 174.43789 * 13 12 11 35 35 H 1.09009 * 109.47026 * 299.99667 * 17 15 14 36 36 H 1.08998 * 109.47482 * 59.99596 * 17 15 14 37 37 H 1.08998 * 109.46992 * 300.00010 * 18 17 15 38 38 H 1.09008 * 109.47135 * 59.99836 * 18 17 15 39 39 H 1.07993 * 122.75060 * 0.02562 * 20 19 18 40 40 H 1.08000 * 124.91549 * 179.97438 * 22 21 20 41 41 H 1.08997 * 109.58651 * 173.39562 * 24 14 13 42 42 H 1.09000 * 109.58548 * 293.68347 * 24 14 13 43 43 H 1.09005 * 109.49534 * 61.43262 * 25 11 2 44 44 H 1.09001 * 109.52461 * 301.35153 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1653 1.2230 -0.3653 5 6 1.5384 2.3402 0.4697 6 7 0.3980 2.2622 1.1222 7 14 2.3343 4.0044 0.1759 8 1 1.8464 4.5665 -1.1092 9 1 1.9798 4.9256 1.2853 10 1 3.8096 3.8442 0.1177 11 6 2.1975 -1.2687 0.0006 12 6 1.8286 -2.0710 -1.2532 13 6 2.6225 -3.3810 -1.2633 14 7 2.3849 -4.0910 0.0010 15 6 1.9578 -5.3693 0.0008 16 8 1.7665 -5.9447 -1.0496 17 6 1.7180 -6.0838 1.3058 18 6 1.2423 -7.5108 1.0262 19 6 1.0031 -8.2255 2.3312 20 6 -0.1469 -8.2563 3.0114 21 7 -0.1017 -8.9515 4.1299 22 6 1.0224 -9.5085 4.4314 23 16 2.1884 -9.1729 3.2267 24 6 2.6211 -3.3808 1.2653 25 6 1.8276 -2.0706 1.2505 26 1 -0.3633 0.0690 1.0253 27 1 -0.3633 0.8535 -0.5725 28 1 -0.3633 -0.9225 -0.4529 29 1 -0.0293 3.0689 1.4501 30 1 3.2690 -1.0692 0.0009 31 1 2.0711 -1.4918 -2.1443 32 1 0.7614 -2.2923 -1.2420 33 1 3.6856 -3.1633 -1.3658 34 1 2.2944 -4.0009 -2.0977 35 1 2.6452 -6.1160 1.8781 36 1 0.9570 -5.5520 1.8768 37 1 0.3153 -7.4790 0.4537 38 1 2.0038 -8.0424 0.4555 39 1 -1.0400 -7.7526 2.6722 40 1 1.1999 -10.1042 5.3146 41 1 2.2897 -3.9994 2.0993 42 1 3.6844 -3.1652 1.3701 43 1 0.7603 -2.2918 1.2381 44 1 2.0683 -1.4893 2.1407 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985651599.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:09 Heat of formation + Delta-G solvation = 28.779701 kcal Electronic energy + Delta-G solvation = -24897.055489 eV Core-core repulsion = 21362.828748 eV Total energy + Delta-G solvation = -3534.226741 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.24729 -39.79525 -37.62418 -35.09819 -34.46026 -32.24612 -31.00433 -29.93619 -29.28291 -26.33319 -26.01540 -24.85067 -23.66270 -22.68439 -21.90327 -20.35499 -19.75202 -18.54118 -18.32074 -17.11325 -16.76391 -15.97878 -15.83338 -15.43909 -15.05040 -14.67871 -14.28741 -14.00170 -13.91874 -13.90789 -13.46271 -13.37502 -12.98152 -12.80204 -12.55856 -12.27394 -12.15023 -11.92433 -11.60436 -11.55996 -11.17655 -10.99384 -10.86363 -10.80940 -10.39300 -10.24833 -10.19071 -9.96431 -9.89558 -9.79105 -9.61160 -9.51819 -9.21771 -8.59152 -8.48438 -6.77162 -5.74041 -3.20711 0.38529 1.03765 1.43488 2.53608 2.64197 3.08047 3.36279 3.42725 3.43792 4.03924 4.33059 4.46313 4.67062 4.75670 4.86524 4.95342 5.06814 5.13749 5.24448 5.31830 5.35577 5.41707 5.45936 5.62616 5.68792 5.70752 5.75592 5.87349 5.88528 6.00300 6.13679 6.23454 6.36587 6.47385 6.59716 6.78252 6.94583 6.96560 7.38717 7.38975 7.49144 7.71425 7.78986 8.19655 8.38500 9.22230 9.85611 10.35065 11.30583 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.022649 B = 0.002416 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.953078 B =11584.578949 C =12158.924217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.596 5.596 3 C -0.254 4.254 4 H 0.068 0.932 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.180 3.820 12 C -0.146 4.146 13 C 0.114 3.886 14 N -0.605 5.605 15 C 0.515 3.485 16 O -0.551 6.551 17 C -0.136 4.136 18 C -0.027 4.027 19 C -0.209 4.209 20 C 0.031 3.969 21 N -0.469 5.469 22 C 0.013 3.987 23 S 0.118 5.882 24 C 0.107 3.893 25 C -0.146 4.146 26 H 0.027 0.973 27 H 0.042 0.958 28 H -0.003 1.003 29 H 0.252 0.748 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.177 0.823 40 H 0.198 0.802 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.195 -21.812 4.086 22.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.318 5.318 3 C -0.384 4.384 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.071 3.929 12 C -0.187 4.187 13 C -0.008 4.008 14 N -0.337 5.337 15 C 0.303 3.697 16 O -0.430 6.430 17 C -0.176 4.176 18 C -0.067 4.067 19 C -0.330 4.330 20 C -0.120 4.120 21 N -0.182 5.182 22 C -0.285 4.285 23 S 0.370 5.630 24 C -0.016 4.016 25 C -0.186 4.186 26 H 0.045 0.955 27 H 0.061 0.939 28 H 0.015 0.985 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.194 0.806 40 H 0.214 0.786 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.562 -22.301 3.880 23.091 hybrid contribution -0.475 1.524 -0.067 1.598 sum 4.086 -20.777 3.813 21.515 Atomic orbital electron populations 1.20740 0.82765 0.95500 0.99046 1.43949 1.01790 1.00187 1.85841 1.19225 0.98275 0.85562 1.35349 0.91463 1.25034 0.97814 0.98527 0.98307 1.70067 1.18517 1.27136 1.39556 0.86254 0.78770 0.84158 0.77329 1.21540 1.21779 1.20527 1.20337 0.95967 0.86023 0.90549 1.22528 1.00205 0.94766 1.01157 1.21649 0.99721 0.93635 0.85827 1.48190 1.65619 1.11757 1.08175 1.20482 0.76563 0.81601 0.91044 1.90676 1.52561 1.66152 1.33627 1.21714 1.03838 0.95635 0.96442 1.19789 1.04045 0.92658 0.90202 1.26077 0.96553 1.06589 1.03812 1.21839 0.98898 1.00370 0.90864 1.66328 1.25074 1.09786 1.17027 1.28377 0.91542 1.04397 1.04194 1.84110 1.17221 1.45336 1.16334 1.21886 1.00545 0.94462 0.84729 1.22511 0.99907 0.94385 1.01830 0.95494 0.93925 0.98453 0.93779 0.91945 0.90847 0.92043 0.91769 0.89622 0.88812 0.88322 0.88671 0.89640 0.80607 0.78553 0.90462 0.91305 0.92133 0.90494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.96 8.03 59.85 0.48 4.44 16 2 N -0.60 -14.31 2.81 -173.25 -0.49 -14.80 16 3 C -0.25 -6.78 9.59 -15.06 -0.14 -6.92 16 4 H 0.07 1.75 7.82 -52.48 -0.41 1.34 16 5 C 0.00 0.04 5.12 -17.43 -0.09 -0.05 16 6 N -0.91 -26.02 10.64 55.49 0.59 -25.43 16 7 Si 0.90 21.51 29.57 -169.99 -5.03 16.49 16 8 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 9 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 C 0.18 3.40 2.55 -67.72 -0.17 3.23 16 12 C -0.15 -2.44 5.35 -26.45 -0.14 -2.58 16 13 C 0.11 1.63 6.42 -3.71 -0.02 1.60 16 14 N -0.60 -8.09 2.97 -172.77 -0.51 -8.60 16 15 C 0.51 6.78 7.70 -10.99 -0.08 6.70 16 16 O -0.55 -8.94 15.39 5.55 0.09 -8.86 16 17 C -0.14 -1.29 4.03 -27.89 -0.11 -1.40 16 18 C -0.03 -0.24 5.04 -27.88 -0.14 -0.38 16 19 C -0.21 -1.84 5.85 -35.92 -0.21 -2.05 16 20 C 0.03 0.30 11.25 -19.18 -0.22 0.08 16 21 N -0.47 -4.86 10.54 -15.75 -0.17 -5.03 16 22 C 0.01 0.10 12.23 51.59 0.63 0.73 16 23 S 0.12 0.87 23.22 -107.50 -2.50 -1.63 16 24 C 0.11 1.31 6.34 -3.71 -0.02 1.29 16 25 C -0.15 -2.38 5.34 -26.61 -0.14 -2.53 16 26 H 0.03 0.70 7.42 -51.93 -0.39 0.32 16 27 H 0.04 1.12 7.22 -51.93 -0.37 0.75 16 28 H 0.00 -0.06 6.47 -51.93 -0.34 -0.40 16 29 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.06 1.19 7.86 -51.93 -0.41 0.79 16 31 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 32 H 0.06 1.10 6.73 -51.93 -0.35 0.75 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 1.27 7.00 -51.93 -0.36 0.90 16 35 H 0.09 0.76 7.94 -51.92 -0.41 0.35 16 36 H 0.10 0.88 7.69 -51.93 -0.40 0.48 16 37 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 38 H 0.09 0.81 8.10 -51.92 -0.42 0.39 16 39 H 0.18 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.20 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.08 0.77 5.93 -51.93 -0.31 0.46 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 1.05 7.72 -51.93 -0.40 0.65 16 44 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 364.31 15.07 5.49 5.49 Total: -1.00 -31.82 364.31 -9.57 -41.39 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -6.66 Total: -1.18 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -0.39 Total: 2.16 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -0.58 Total: -53.86 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.49 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.50 Total: -1.63 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.82 -9.57 -41.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985651599.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.171 kcal (2) G-P(sol) polarization free energy of solvation -31.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds