Wall clock time and date at job start Tue Mar 31 2020 13:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36932 * 120.00170 * 2 1 4 4 H 1.08003 * 120.00328 * 202.99318 * 3 2 1 5 5 C 1.38812 * 120.00148 * 23.00161 * 3 2 1 6 6 N 1.31621 * 119.99939 * 11.63254 * 5 3 2 7 7 Si 1.86795 * 120.00335 * 191.63921 * 5 3 2 8 8 H 1.48504 * 109.47461 * 89.99368 * 7 5 3 9 9 H 1.48495 * 109.47415 * 209.99324 * 7 5 3 10 10 H 1.48508 * 109.47036 * 329.99492 * 7 5 3 11 11 C 1.46503 * 120.00180 * 179.97438 * 2 1 3 12 12 C 1.53354 * 109.41545 * 60.12755 * 11 2 1 13 13 C 1.53193 * 109.15017 * 178.67385 * 12 11 2 14 14 N 1.46933 * 108.88959 * 54.58075 * 13 12 11 15 15 C 1.34776 * 120.62848 * 126.29781 * 14 13 12 16 16 O 1.21284 * 120.00020 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00053 * 180.02562 * 15 14 13 18 18 C 1.52996 * 109.47546 * 180.02562 * 17 15 14 19 19 C 1.50701 * 109.47612 * 179.97438 * 18 17 15 20 20 C 1.33642 * 126.03233 * 89.99622 * 19 18 17 21 21 N 1.31779 * 114.49671 * 180.02562 * 20 19 18 22 22 C 1.29030 * 117.12651 * 0.02562 * 21 20 19 23 23 S 1.70974 * 110.16714 * 359.72118 * 22 21 20 24 24 C 1.46925 * 118.74169 * 306.32145 * 14 13 12 25 25 C 1.53043 * 109.46098 * 300.00478 * 11 2 1 26 26 H 1.08996 * 109.47164 * 273.85130 * 1 2 3 27 27 H 1.09004 * 109.46701 * 33.85287 * 1 2 3 28 28 H 1.09005 * 109.46870 * 153.85067 * 1 2 3 29 29 H 0.96999 * 120.00018 * 180.02562 * 6 5 3 30 30 H 1.08991 * 109.45095 * 180.02562 * 11 2 1 31 31 H 1.09008 * 109.68333 * 58.71391 * 12 11 2 32 32 H 1.08996 * 109.47531 * 298.51792 * 12 11 2 33 33 H 1.08996 * 109.58664 * 294.72504 * 13 12 11 34 34 H 1.09000 * 109.59087 * 174.43789 * 13 12 11 35 35 H 1.09009 * 109.47026 * 299.99667 * 17 15 14 36 36 H 1.08998 * 109.47482 * 59.99596 * 17 15 14 37 37 H 1.08998 * 109.46992 * 300.00010 * 18 17 15 38 38 H 1.09008 * 109.47135 * 59.99836 * 18 17 15 39 39 H 1.07993 * 122.75060 * 0.02562 * 20 19 18 40 40 H 1.08000 * 124.91549 * 179.97438 * 22 21 20 41 41 H 1.08997 * 109.58651 * 173.39562 * 24 14 13 42 42 H 1.09000 * 109.58548 * 293.68347 * 24 14 13 43 43 H 1.09005 * 109.49534 * 61.43262 * 25 11 2 44 44 H 1.09001 * 109.52461 * 301.35153 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1653 1.2230 -0.3653 5 6 1.5384 2.3402 0.4697 6 7 0.3980 2.2622 1.1222 7 14 2.3343 4.0044 0.1759 8 1 1.8464 4.5665 -1.1092 9 1 1.9798 4.9256 1.2853 10 1 3.8096 3.8442 0.1177 11 6 2.1975 -1.2687 0.0006 12 6 1.8286 -2.0710 -1.2532 13 6 2.6225 -3.3810 -1.2633 14 7 2.3849 -4.0910 0.0010 15 6 1.9578 -5.3693 0.0008 16 8 1.7665 -5.9447 -1.0496 17 6 1.7180 -6.0838 1.3058 18 6 1.2423 -7.5108 1.0262 19 6 1.0031 -8.2255 2.3312 20 6 -0.1469 -8.2563 3.0114 21 7 -0.1017 -8.9515 4.1299 22 6 1.0224 -9.5085 4.4314 23 16 2.1884 -9.1729 3.2267 24 6 2.6211 -3.3808 1.2653 25 6 1.8276 -2.0706 1.2505 26 1 -0.3633 0.0690 1.0253 27 1 -0.3633 0.8535 -0.5725 28 1 -0.3633 -0.9225 -0.4529 29 1 -0.0293 3.0689 1.4501 30 1 3.2690 -1.0692 0.0009 31 1 2.0711 -1.4918 -2.1443 32 1 0.7614 -2.2923 -1.2420 33 1 3.6856 -3.1633 -1.3658 34 1 2.2944 -4.0009 -2.0977 35 1 2.6452 -6.1160 1.8781 36 1 0.9570 -5.5520 1.8768 37 1 0.3153 -7.4790 0.4537 38 1 2.0038 -8.0424 0.4555 39 1 -1.0400 -7.7526 2.6722 40 1 1.1999 -10.1042 5.3146 41 1 2.2897 -3.9994 2.0993 42 1 3.6844 -3.1652 1.3701 43 1 0.7603 -2.2918 1.2381 44 1 2.0683 -1.4893 2.1407 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985651599.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:09 Heat of formation + Delta-G solvation = 10.032683 kcal Electronic energy + Delta-G solvation = -24897.868421 eV Core-core repulsion = 21362.828748 eV Total energy + Delta-G solvation = -3535.039673 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.28379 -40.51371 -38.99430 -36.70035 -35.24316 -33.91506 -32.21400 -31.50318 -30.18176 -28.03362 -27.16446 -26.13456 -24.62862 -23.97994 -23.30531 -21.17748 -20.89653 -19.69242 -19.04184 -18.75024 -18.10292 -16.98618 -16.89060 -16.78524 -16.23767 -15.72463 -15.41243 -15.17404 -15.07341 -14.97544 -14.76007 -14.67089 -14.26113 -13.99477 -13.68772 -13.54631 -13.17264 -13.11930 -12.96490 -12.76529 -12.66659 -12.60952 -12.35458 -12.17321 -12.04189 -11.84404 -11.82086 -11.61058 -11.23600 -10.84151 -10.61180 -10.57048 -10.17341 -9.84879 -9.64307 -8.75271 -7.80547 -5.28693 -0.22405 0.45348 0.83151 1.47122 1.48656 1.56760 1.62349 1.86476 2.06980 2.51650 3.32709 3.38322 3.57020 3.64278 3.86886 3.96146 4.03836 4.10255 4.18205 4.21771 4.36557 4.40936 4.42437 4.49863 4.58838 4.60293 4.75546 4.83495 4.85437 4.91672 4.99726 5.01696 5.07204 5.11581 5.23319 5.25794 5.40166 5.51044 5.60585 5.68057 5.72875 6.35162 6.44851 6.77845 7.16150 7.17340 7.90316 8.34913 9.22591 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.022649 B = 0.002416 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.953078 B =11584.578949 C =12158.924217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.612 5.612 3 C -0.258 4.258 4 H 0.072 0.928 5 C -0.055 4.055 6 N -0.940 5.940 7 Si 0.967 3.033 8 H -0.290 1.290 9 H -0.297 1.297 10 H -0.266 1.266 11 C 0.173 3.827 12 C -0.133 4.133 13 C 0.122 3.878 14 N -0.608 5.608 15 C 0.514 3.486 16 O -0.584 6.584 17 C -0.128 4.128 18 C -0.020 4.020 19 C -0.220 4.220 20 C 0.019 3.981 21 N -0.505 5.505 22 C 0.013 3.987 23 S 0.153 5.847 24 C 0.117 3.883 25 C -0.136 4.136 26 H 0.002 0.998 27 H 0.011 0.989 28 H 0.021 0.979 29 H 0.246 0.754 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.180 0.820 40 H 0.226 0.774 41 H 0.109 0.891 42 H 0.088 0.912 43 H 0.047 0.953 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.100 -23.433 4.819 24.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.334 5.334 3 C -0.388 4.388 4 H 0.090 0.910 5 C -0.250 4.250 6 N -0.587 5.587 7 Si 0.796 3.204 8 H -0.217 1.217 9 H -0.224 1.224 10 H -0.191 1.191 11 C 0.066 3.934 12 C -0.173 4.173 13 C -0.001 4.001 14 N -0.340 5.340 15 C 0.304 3.696 16 O -0.465 6.465 17 C -0.168 4.168 18 C -0.060 4.060 19 C -0.341 4.341 20 C -0.131 4.131 21 N -0.219 5.219 22 C -0.284 4.284 23 S 0.405 5.595 24 C -0.006 4.006 25 C -0.177 4.177 26 H 0.020 0.980 27 H 0.030 0.970 28 H 0.040 0.960 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.135 0.865 36 H 0.127 0.873 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.197 0.803 40 H 0.242 0.758 41 H 0.127 0.873 42 H 0.106 0.894 43 H 0.066 0.934 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.504 -23.958 4.612 25.250 hybrid contribution -1.038 1.937 -0.319 2.221 sum 5.466 -22.021 4.293 23.092 Atomic orbital electron populations 1.20396 0.83387 0.95239 0.97139 1.44182 1.01759 1.01485 1.86016 1.19573 0.98430 0.86746 1.34098 0.90990 1.25773 0.98591 1.01790 0.98825 1.70230 1.19973 1.27397 1.41081 0.85267 0.78555 0.80055 0.76568 1.21730 1.22365 1.19092 1.20580 0.95428 0.84631 0.92713 1.22330 0.99655 0.95748 0.99592 1.21501 1.00129 0.92037 0.86477 1.48263 1.65636 1.12020 1.08078 1.21081 0.75361 0.81312 0.91875 1.90667 1.53788 1.66839 1.35227 1.21729 1.05252 0.95333 0.94532 1.19658 1.03473 0.92552 0.90309 1.26020 0.97095 1.07226 1.03765 1.21983 0.99458 1.00642 0.91059 1.66365 1.26523 1.11167 1.17808 1.28920 0.91038 1.03486 1.04922 1.83982 1.15949 1.44263 1.15283 1.21889 1.00929 0.92537 0.85218 1.22303 0.99799 0.96063 0.99499 0.97972 0.96977 0.96036 0.94459 0.91885 0.91597 0.93509 0.90036 0.90115 0.86514 0.87282 0.89636 0.89981 0.80344 0.75790 0.87278 0.89427 0.93428 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.09 8.03 127.77 1.03 10.12 16 2 N -0.61 -29.60 2.81 -702.04 -1.97 -31.57 16 3 C -0.26 -13.79 9.59 84.03 0.81 -12.98 16 4 H 0.07 3.70 7.82 -2.91 -0.02 3.68 16 5 C -0.06 -3.04 5.12 84.86 0.43 -2.61 16 6 N -0.94 -55.24 10.64 21.65 0.23 -55.01 16 7 Si 0.97 44.57 29.57 68.60 2.03 46.60 16 8 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 9 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 C 0.17 6.41 2.55 45.12 0.12 6.53 16 12 C -0.13 -4.33 5.35 30.78 0.16 -4.17 16 13 C 0.12 3.24 6.42 86.36 0.55 3.80 16 14 N -0.61 -14.74 2.97 -818.90 -2.44 -17.17 16 15 C 0.51 12.39 7.70 87.66 0.67 13.07 16 16 O -0.58 -18.20 15.39 -3.04 -0.05 -18.24 16 17 C -0.13 -2.08 4.03 29.85 0.12 -1.96 16 18 C -0.02 -0.32 5.04 29.85 0.15 -0.17 16 19 C -0.22 -3.45 5.85 24.64 0.14 -3.31 16 20 C 0.02 0.34 11.25 83.66 0.94 1.28 16 21 N -0.50 -9.74 10.54 -203.75 -2.15 -11.89 16 22 C 0.01 0.17 12.23 130.65 1.60 1.77 16 23 S 0.15 1.84 23.22 -56.49 -1.31 0.53 16 24 C 0.12 2.50 6.34 86.36 0.55 3.05 16 25 C -0.14 -4.28 5.34 30.67 0.16 -4.12 16 26 H 0.00 0.11 7.42 -2.39 -0.02 0.09 16 27 H 0.01 0.63 7.22 -2.38 -0.02 0.62 16 28 H 0.02 0.93 6.47 -2.38 -0.02 0.92 16 29 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 30 H 0.06 2.32 7.86 -2.39 -0.02 2.30 16 31 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 32 H 0.05 1.65 6.73 -2.39 -0.02 1.63 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.08 2.29 7.00 -2.39 -0.02 2.27 16 35 H 0.12 1.40 7.94 -2.38 -0.02 1.38 16 36 H 0.11 1.61 7.69 -2.39 -0.02 1.59 16 37 H 0.09 1.57 8.10 -2.39 -0.02 1.55 16 38 H 0.08 1.41 8.10 -2.38 -0.02 1.39 16 39 H 0.18 2.85 8.06 -2.91 -0.02 2.82 16 40 H 0.23 1.38 8.06 -2.91 -0.02 1.35 16 41 H 0.11 1.71 5.93 -2.39 -0.01 1.69 16 42 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.05 1.61 7.72 -2.38 -0.02 1.59 16 44 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -69.76 364.31 2.78 -66.98 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 0.99 Total: 9.47 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 7.44 Total: 10.30 kcal Atomic # 7 Polarization: -109.32 SS G_CDS: -6.33 Total: -115.64 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.05 Total: -18.24 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -1.31 Total: 0.53 kcal Total: -69.76 2.78 -66.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985651599.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.016 kcal (2) G-P(sol) polarization free energy of solvation -69.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds