Wall clock time and date at job start Tue Mar 31 2020 13:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36931 * 120.00194 * 2 1 4 4 H 1.07999 * 120.00205 * 202.99609 * 3 2 1 5 5 C 1.38813 * 119.99826 * 22.99151 * 3 2 1 6 6 N 1.31618 * 120.00140 * 11.64309 * 5 3 2 7 7 Si 1.86800 * 119.99926 * 191.63760 * 5 3 2 8 8 H 1.48506 * 109.47068 * 60.00408 * 7 5 3 9 9 H 1.48509 * 109.46831 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47326 * 299.99980 * 7 5 3 11 11 C 1.46504 * 120.00006 * 180.02562 * 2 1 3 12 12 C 1.53043 * 109.45998 * 300.00052 * 11 2 1 13 13 C 1.53193 * 109.31256 * 181.38523 * 12 11 2 14 14 N 1.46925 * 108.89319 * 305.29045 * 13 12 11 15 15 C 1.34770 * 120.63278 * 233.67998 * 14 13 12 16 16 O 1.21277 * 120.00064 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00233 * 180.02562 * 15 14 13 18 18 C 1.52998 * 109.47274 * 180.02562 * 17 15 14 19 19 C 1.50702 * 109.46956 * 179.97438 * 18 17 15 20 20 C 1.33645 * 122.74627 * 124.73655 * 19 18 17 21 21 S 1.76199 * 107.92006 * 179.97438 * 20 19 18 22 22 C 1.70967 * 90.28562 * 0.27032 * 21 20 19 23 23 N 1.29027 * 110.17033 * 359.84289 * 22 21 20 24 24 C 1.47208 * 118.55234 * 53.54295 * 14 13 12 25 25 C 1.53038 * 109.46038 * 60.06654 * 11 2 1 26 26 H 1.09000 * 109.47021 * 273.84552 * 1 2 3 27 27 H 1.08997 * 109.47556 * 33.84790 * 1 2 3 28 28 H 1.09002 * 109.47075 * 153.85016 * 1 2 3 29 29 H 0.96998 * 120.00485 * 180.02562 * 6 5 3 30 30 H 1.08995 * 109.45119 * 180.02562 * 11 2 1 31 31 H 1.09004 * 109.49913 * 61.43114 * 12 11 2 32 32 H 1.08997 * 109.52143 * 301.35247 * 12 11 2 33 33 H 1.09005 * 109.58329 * 65.15207 * 13 12 11 34 34 H 1.09000 * 109.58499 * 185.43587 * 13 12 11 35 35 H 1.09002 * 109.47351 * 299.99886 * 17 15 14 36 36 H 1.08999 * 109.46983 * 60.00002 * 17 15 14 37 37 H 1.08997 * 109.47434 * 299.99995 * 18 17 15 38 38 H 1.08999 * 109.47201 * 60.00030 * 18 17 15 39 39 H 1.07995 * 126.04199 * 0.03108 * 20 19 18 40 40 H 1.08001 * 124.92053 * 179.83465 * 22 21 20 41 41 H 1.09000 * 109.53475 * 186.67411 * 24 14 13 42 42 H 1.08994 * 109.67896 * 66.36792 * 24 14 13 43 43 H 1.09005 * 109.50110 * 298.56493 * 25 11 2 44 44 H 1.09006 * 109.49799 * 58.63035 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1653 1.2230 -0.3654 5 6 1.5383 2.3402 0.4696 6 7 0.3979 2.2623 1.1220 7 14 2.3343 4.0044 0.1757 8 1 2.4683 4.2381 -1.2848 9 1 1.4890 5.0697 0.7724 10 1 3.6785 4.0285 0.8062 11 6 2.1975 -1.2688 -0.0006 12 6 1.8276 -2.0716 1.2487 13 6 2.6212 -3.3819 1.2623 14 7 2.3853 -4.0941 -0.0009 15 6 1.9584 -5.3724 0.0008 16 8 1.7649 -5.9457 1.0519 17 6 1.7216 -6.0896 -1.3032 18 6 1.2441 -7.5156 -1.0217 19 6 1.0067 -8.2325 -2.3258 20 6 1.5925 -9.3948 -2.6289 21 16 1.0429 -9.8772 -4.2320 22 6 0.0864 -8.4641 -4.3386 23 7 0.2093 -7.7615 -3.2634 24 6 2.6225 -3.3800 -1.2661 25 6 1.8289 -2.0698 -1.2514 26 1 -0.3633 0.0689 1.0254 27 1 -0.3634 0.8534 -0.5724 28 1 -0.3633 -0.9225 -0.4529 29 1 -0.0295 3.0689 1.4498 30 1 3.2691 -1.0692 0.0000 31 1 0.7603 -2.2928 1.2363 32 1 2.0684 -1.4911 2.1393 33 1 3.6842 -3.1641 1.3662 34 1 2.2916 -4.0001 2.0974 35 1 0.9616 -5.5590 -1.8769 36 1 2.6500 -6.1228 -1.8734 37 1 2.0037 -8.0465 -0.4479 38 1 0.3157 -7.4820 -0.4517 39 1 2.2804 -9.9423 -2.0017 40 1 -0.5313 -8.1979 -5.1836 41 1 2.2920 -3.9980 -2.1010 42 1 3.6853 -3.1623 -1.3711 43 1 0.7616 -2.2910 -1.2404 44 1 2.0705 -1.4875 -2.1406 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985812613.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:12 Heat of formation + Delta-G solvation = 30.623598 kcal Electronic energy + Delta-G solvation = -24935.845662 eV Core-core repulsion = 21401.698878 eV Total energy + Delta-G solvation = -3534.146784 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.39174 -39.77566 -37.52675 -35.02137 -33.73991 -32.16315 -30.97297 -30.02758 -29.52638 -26.13221 -25.96074 -24.97541 -24.01040 -22.69039 -21.85517 -19.90577 -19.67678 -18.39654 -18.24971 -16.97826 -16.72383 -16.13652 -15.80662 -15.44074 -15.00144 -14.73648 -14.06887 -13.91971 -13.81467 -13.58367 -13.52443 -13.30046 -13.12080 -12.80884 -12.44592 -12.19519 -11.94431 -11.79704 -11.65625 -11.39664 -11.21774 -10.89459 -10.83295 -10.75787 -10.37216 -10.23891 -10.10429 -9.97651 -9.83377 -9.80512 -9.68667 -9.53119 -9.12929 -8.54435 -8.41205 -6.72807 -5.70139 -3.16641 0.39121 1.06276 1.39335 2.46595 2.75324 3.18045 3.39053 3.44550 3.45214 3.89598 4.47990 4.50906 4.74611 4.88218 4.92911 4.98182 5.11195 5.24720 5.29565 5.38455 5.43475 5.46459 5.53041 5.68169 5.72396 5.81672 5.84034 5.93112 5.99050 6.07348 6.19614 6.28789 6.41238 6.56602 6.65896 6.83101 7.01152 7.04103 7.40266 7.42292 7.58413 7.75943 7.82462 8.30137 8.42387 9.26015 9.89586 10.39331 11.34583 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.025587 B = 0.002305 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.025903 B =12142.432136 C =12672.495179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.596 5.596 3 C -0.255 4.255 4 H 0.067 0.933 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.180 3.820 12 C -0.144 4.144 13 C 0.113 3.887 14 N -0.606 5.606 15 C 0.515 3.485 16 O -0.552 6.552 17 C -0.131 4.131 18 C -0.028 4.028 19 C 0.069 3.931 20 C -0.254 4.254 21 S 0.107 5.893 22 C 0.026 3.974 23 N -0.464 5.464 24 C 0.110 3.890 25 C -0.148 4.148 26 H 0.027 0.973 27 H 0.042 0.958 28 H -0.003 1.003 29 H 0.252 0.748 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.178 0.822 40 H 0.200 0.800 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.967 -23.558 -10.738 26.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.318 5.318 3 C -0.384 4.384 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.071 3.929 12 C -0.184 4.184 13 C -0.010 4.010 14 N -0.339 5.339 15 C 0.303 3.697 16 O -0.431 6.431 17 C -0.171 4.171 18 C -0.068 4.068 19 C -0.062 4.062 20 C -0.393 4.393 21 S 0.359 5.641 22 C -0.273 4.273 23 N -0.178 5.178 24 C -0.014 4.014 25 C -0.188 4.188 26 H 0.045 0.955 27 H 0.061 0.939 28 H 0.015 0.985 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.195 0.805 40 H 0.217 0.783 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.615 -24.015 -10.756 26.443 hybrid contribution 0.402 1.523 0.509 1.656 sum 3.017 -22.491 -10.247 24.899 Atomic orbital electron populations 1.20734 0.82762 0.95422 0.99093 1.43946 1.01785 1.00169 1.85883 1.19169 0.98236 0.85569 1.35463 0.91536 1.25037 0.97818 0.98513 0.98341 1.70058 1.18485 1.27234 1.39493 0.86339 0.78482 0.83886 0.77817 1.21137 1.21688 1.20990 1.20275 0.95931 0.86047 0.90625 1.22494 1.00004 0.94449 1.01491 1.21683 0.99693 0.93773 0.85837 1.48247 1.65787 1.11772 1.08086 1.20559 0.76375 0.81561 0.91176 1.90665 1.52485 1.66308 1.33660 1.21578 1.03631 0.95836 0.96088 1.19937 1.03359 0.93332 0.90218 1.20438 0.95137 0.93562 0.97076 1.26897 1.09822 1.02220 1.00323 1.84060 1.40588 1.25596 1.13864 1.28457 1.03488 0.94826 1.00524 1.66141 1.18023 1.32704 1.00894 1.21860 1.00325 0.94199 0.84973 1.22479 1.00226 0.94728 1.01390 0.95504 0.93946 0.98451 0.93734 0.91982 0.92265 0.90683 0.91868 0.89707 0.87950 0.89197 0.89439 0.89197 0.80450 0.78333 0.90370 0.91397 0.91884 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.06 8.03 59.85 0.48 4.55 16 2 N -0.60 -14.64 2.81 -173.44 -0.49 -15.13 16 3 C -0.25 -6.89 9.59 -15.06 -0.14 -7.04 16 4 H 0.07 1.75 7.82 -52.49 -0.41 1.34 16 5 C 0.00 0.03 5.12 -17.43 -0.09 -0.06 16 6 N -0.91 -26.50 10.64 55.49 0.59 -25.91 16 7 Si 0.90 21.76 29.57 -169.99 -5.03 16.73 16 8 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 C 0.18 3.52 2.55 -67.89 -0.17 3.35 16 12 C -0.14 -2.65 5.34 -26.61 -0.14 -2.79 16 13 C 0.11 1.76 6.42 -3.71 -0.02 1.73 16 14 N -0.61 -8.71 2.98 -172.54 -0.51 -9.23 16 15 C 0.51 7.40 7.70 -10.99 -0.08 7.32 16 16 O -0.55 -9.62 15.39 5.56 0.09 -9.53 16 17 C -0.13 -1.44 3.96 -27.89 -0.11 -1.55 16 18 C -0.03 -0.29 5.00 -27.88 -0.14 -0.43 16 19 C 0.07 0.69 6.08 -84.22 -0.51 0.18 16 20 C -0.25 -2.00 11.07 29.12 0.32 -1.68 16 21 S 0.11 0.69 23.22 -107.50 -2.50 -1.81 16 22 C 0.03 0.19 12.23 51.58 0.63 0.82 16 23 N -0.46 -4.86 10.34 -11.90 -0.12 -4.99 16 24 C 0.11 1.40 6.35 -3.56 -0.02 1.37 16 25 C -0.15 -2.39 5.32 -26.61 -0.14 -2.54 16 26 H 0.03 0.72 7.42 -51.93 -0.39 0.34 16 27 H 0.04 1.13 7.22 -51.93 -0.37 0.75 16 28 H 0.00 -0.07 6.46 -51.93 -0.34 -0.40 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.06 1.22 7.86 -51.93 -0.41 0.81 16 31 H 0.06 1.17 7.72 -51.93 -0.40 0.77 16 32 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.38 7.00 -51.93 -0.36 1.02 16 35 H 0.10 1.16 7.63 -51.93 -0.40 0.76 16 36 H 0.09 0.84 7.96 -51.93 -0.41 0.43 16 37 H 0.09 0.86 7.98 -51.93 -0.41 0.44 16 38 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 39 H 0.18 1.04 8.06 -52.49 -0.42 0.61 16 40 H 0.20 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.08 0.82 5.97 -51.93 -0.31 0.51 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 1.09 6.72 -51.93 -0.35 0.74 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 363.90 15.07 5.48 5.48 Total: -1.00 -32.44 363.90 -9.29 -41.73 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -6.65 Total: -0.58 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -0.15 Total: 3.23 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.53 Total: -55.26 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.50 Total: -1.81 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.44 -9.29 -41.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985812613.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.357 kcal (2) G-P(sol) polarization free energy of solvation -32.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds