Wall clock time and date at job start Tue Mar 31 2020 13:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36931 * 120.00194 * 2 1 4 4 H 1.07999 * 120.00205 * 202.99609 * 3 2 1 5 5 C 1.38813 * 119.99826 * 22.99151 * 3 2 1 6 6 N 1.31618 * 120.00140 * 11.64309 * 5 3 2 7 7 Si 1.86800 * 119.99926 * 191.63760 * 5 3 2 8 8 H 1.48506 * 109.47068 * 60.00408 * 7 5 3 9 9 H 1.48509 * 109.46831 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47326 * 299.99980 * 7 5 3 11 11 C 1.46504 * 120.00006 * 180.02562 * 2 1 3 12 12 C 1.53043 * 109.45998 * 300.00052 * 11 2 1 13 13 C 1.53193 * 109.31256 * 181.38523 * 12 11 2 14 14 N 1.46925 * 108.89319 * 305.29045 * 13 12 11 15 15 C 1.34770 * 120.63278 * 233.67998 * 14 13 12 16 16 O 1.21277 * 120.00064 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00233 * 180.02562 * 15 14 13 18 18 C 1.52998 * 109.47274 * 180.02562 * 17 15 14 19 19 C 1.50702 * 109.46956 * 179.97438 * 18 17 15 20 20 C 1.33645 * 122.74627 * 124.73655 * 19 18 17 21 21 S 1.76199 * 107.92006 * 179.97438 * 20 19 18 22 22 C 1.70967 * 90.28562 * 0.27032 * 21 20 19 23 23 N 1.29027 * 110.17033 * 359.84289 * 22 21 20 24 24 C 1.47208 * 118.55234 * 53.54295 * 14 13 12 25 25 C 1.53038 * 109.46038 * 60.06654 * 11 2 1 26 26 H 1.09000 * 109.47021 * 273.84552 * 1 2 3 27 27 H 1.08997 * 109.47556 * 33.84790 * 1 2 3 28 28 H 1.09002 * 109.47075 * 153.85016 * 1 2 3 29 29 H 0.96998 * 120.00485 * 180.02562 * 6 5 3 30 30 H 1.08995 * 109.45119 * 180.02562 * 11 2 1 31 31 H 1.09004 * 109.49913 * 61.43114 * 12 11 2 32 32 H 1.08997 * 109.52143 * 301.35247 * 12 11 2 33 33 H 1.09005 * 109.58329 * 65.15207 * 13 12 11 34 34 H 1.09000 * 109.58499 * 185.43587 * 13 12 11 35 35 H 1.09002 * 109.47351 * 299.99886 * 17 15 14 36 36 H 1.08999 * 109.46983 * 60.00002 * 17 15 14 37 37 H 1.08997 * 109.47434 * 299.99995 * 18 17 15 38 38 H 1.08999 * 109.47201 * 60.00030 * 18 17 15 39 39 H 1.07995 * 126.04199 * 0.03108 * 20 19 18 40 40 H 1.08001 * 124.92053 * 179.83465 * 22 21 20 41 41 H 1.09000 * 109.53475 * 186.67411 * 24 14 13 42 42 H 1.08994 * 109.67896 * 66.36792 * 24 14 13 43 43 H 1.09005 * 109.50110 * 298.56493 * 25 11 2 44 44 H 1.09006 * 109.49799 * 58.63035 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1653 1.2230 -0.3654 5 6 1.5383 2.3402 0.4696 6 7 0.3979 2.2623 1.1220 7 14 2.3343 4.0044 0.1757 8 1 2.4683 4.2381 -1.2848 9 1 1.4890 5.0697 0.7724 10 1 3.6785 4.0285 0.8062 11 6 2.1975 -1.2688 -0.0006 12 6 1.8276 -2.0716 1.2487 13 6 2.6212 -3.3819 1.2623 14 7 2.3853 -4.0941 -0.0009 15 6 1.9584 -5.3724 0.0008 16 8 1.7649 -5.9457 1.0519 17 6 1.7216 -6.0896 -1.3032 18 6 1.2441 -7.5156 -1.0217 19 6 1.0067 -8.2325 -2.3258 20 6 1.5925 -9.3948 -2.6289 21 16 1.0429 -9.8772 -4.2320 22 6 0.0864 -8.4641 -4.3386 23 7 0.2093 -7.7615 -3.2634 24 6 2.6225 -3.3800 -1.2661 25 6 1.8289 -2.0698 -1.2514 26 1 -0.3633 0.0689 1.0254 27 1 -0.3634 0.8534 -0.5724 28 1 -0.3633 -0.9225 -0.4529 29 1 -0.0295 3.0689 1.4498 30 1 3.2691 -1.0692 0.0000 31 1 0.7603 -2.2928 1.2363 32 1 2.0684 -1.4911 2.1393 33 1 3.6842 -3.1641 1.3662 34 1 2.2916 -4.0001 2.0974 35 1 0.9616 -5.5590 -1.8769 36 1 2.6500 -6.1228 -1.8734 37 1 2.0037 -8.0465 -0.4479 38 1 0.3157 -7.4820 -0.4517 39 1 2.2804 -9.9423 -2.0017 40 1 -0.5313 -8.1979 -5.1836 41 1 2.2920 -3.9980 -2.1010 42 1 3.6853 -3.1623 -1.3711 43 1 0.7616 -2.2910 -1.2404 44 1 2.0705 -1.4875 -2.1406 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985812613.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:12 Heat of formation + Delta-G solvation = 10.872671 kcal Electronic energy + Delta-G solvation = -24936.702126 eV Core-core repulsion = 21401.698878 eV Total energy + Delta-G solvation = -3535.003248 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.34778 -40.64943 -38.97498 -36.68481 -34.61123 -33.87268 -32.20389 -31.48515 -30.59165 -28.03679 -27.05891 -26.08693 -25.06871 -24.03024 -23.40915 -21.14671 -20.46201 -19.68770 -18.90334 -18.74087 -18.02393 -17.06691 -16.88629 -16.82307 -16.35461 -15.74658 -15.51421 -15.18546 -15.09976 -14.89228 -14.66555 -14.28078 -14.12587 -14.03195 -13.94766 -13.55860 -13.20596 -13.10312 -12.87123 -12.76359 -12.60668 -12.42899 -12.34386 -12.23262 -12.09351 -11.94407 -11.81762 -11.59564 -11.23519 -10.81218 -10.59225 -10.56044 -10.36967 -9.71373 -9.64440 -8.75628 -7.80192 -5.28819 -0.16185 0.54627 0.83896 1.47525 1.49738 1.56194 1.62797 1.80341 2.08478 2.52148 3.29983 3.33121 3.55195 3.65427 3.88560 3.99144 4.12032 4.15398 4.19911 4.24333 4.36985 4.40380 4.47934 4.57396 4.59248 4.61852 4.74717 4.83157 4.84199 4.92225 4.98400 5.02574 5.04448 5.11761 5.25100 5.26684 5.38081 5.50752 5.60927 5.67551 5.71979 6.35116 6.45284 6.82655 7.16671 7.17099 7.90023 8.35232 9.23125 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.025587 B = 0.002305 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.025903 B =12142.432136 C =12672.495179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.612 5.612 3 C -0.259 4.259 4 H 0.075 0.925 5 C -0.058 4.058 6 N -0.942 5.942 7 Si 0.970 3.030 8 H -0.277 1.277 9 H -0.299 1.299 10 H -0.275 1.275 11 C 0.174 3.826 12 C -0.132 4.132 13 C 0.123 3.877 14 N -0.609 5.609 15 C 0.513 3.487 16 O -0.587 6.587 17 C -0.119 4.119 18 C -0.023 4.023 19 C 0.048 3.952 20 C -0.258 4.258 21 S 0.155 5.845 22 C 0.017 3.983 23 N -0.501 5.501 24 C 0.117 3.883 25 C -0.137 4.137 26 H -0.005 1.005 27 H 0.015 0.985 28 H 0.024 0.976 29 H 0.246 0.754 30 H 0.065 0.935 31 H 0.039 0.961 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.195 0.805 40 H 0.224 0.776 41 H 0.109 0.891 42 H 0.090 0.910 43 H 0.050 0.950 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.761 -25.359 -13.124 28.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.334 5.334 3 C -0.389 4.389 4 H 0.093 0.907 5 C -0.253 4.253 6 N -0.590 5.590 7 Si 0.798 3.202 8 H -0.203 1.203 9 H -0.225 1.225 10 H -0.200 1.200 11 C 0.067 3.933 12 C -0.172 4.172 13 C 0.000 4.000 14 N -0.341 5.341 15 C 0.303 3.697 16 O -0.468 6.468 17 C -0.159 4.159 18 C -0.064 4.064 19 C -0.083 4.083 20 C -0.397 4.397 21 S 0.408 5.592 22 C -0.281 4.281 23 N -0.215 5.215 24 C -0.006 4.006 25 C -0.177 4.177 26 H 0.013 0.987 27 H 0.034 0.966 28 H 0.042 0.958 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.133 0.867 37 H 0.110 0.890 38 H 0.086 0.914 39 H 0.212 0.788 40 H 0.241 0.759 41 H 0.127 0.873 42 H 0.108 0.892 43 H 0.069 0.931 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.441 -25.853 -13.179 29.357 hybrid contribution -0.159 1.962 1.214 2.313 sum 4.282 -23.891 -11.965 27.061 Atomic orbital electron populations 1.20389 0.83416 0.95440 0.96901 1.44198 1.01747 1.01476 1.85977 1.19569 0.98528 0.86627 1.34215 0.90716 1.25838 0.98600 1.02036 0.98784 1.70245 1.20082 1.27512 1.41117 0.85299 0.77604 0.79429 0.77842 1.20296 1.22520 1.20047 1.20530 0.95524 0.84645 0.92617 1.22285 0.99209 0.95702 1.00035 1.21469 1.00034 0.91923 0.86621 1.48333 1.65701 1.11958 1.08094 1.21173 0.75220 0.81367 0.91954 1.90652 1.53785 1.67085 1.35270 1.21539 1.04733 0.95569 0.94048 1.19814 1.02379 0.93367 0.90818 1.20322 0.96469 0.94552 0.96962 1.27187 1.09423 1.01655 1.01478 1.83913 1.39111 1.24094 1.12124 1.28917 1.03593 0.95112 1.00449 1.66129 1.19161 1.34301 1.01930 1.21951 1.01073 0.92517 0.85031 1.22300 1.00035 0.96070 0.99288 0.98654 0.96598 0.95805 0.94482 0.91721 0.94242 0.92996 0.89994 0.90629 0.87932 0.86721 0.89004 0.91423 0.78780 0.75945 0.87292 0.89167 0.93142 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.35 8.03 127.77 1.03 10.37 16 2 N -0.61 -30.33 2.81 -702.63 -1.97 -32.30 16 3 C -0.26 -14.05 9.59 84.03 0.81 -13.25 16 4 H 0.08 3.85 7.82 -2.91 -0.02 3.83 16 5 C -0.06 -3.26 5.12 84.86 0.43 -2.83 16 6 N -0.94 -56.76 10.64 21.65 0.23 -56.53 16 7 Si 0.97 45.10 29.57 68.60 2.03 47.13 16 8 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 9 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 C 0.17 6.68 2.55 45.02 0.11 6.80 16 12 C -0.13 -4.91 5.34 30.67 0.16 -4.75 16 13 C 0.12 3.72 6.42 86.36 0.55 4.27 16 14 N -0.61 -16.31 2.98 -818.20 -2.44 -18.75 16 15 C 0.51 13.99 7.70 87.66 0.68 14.67 16 16 O -0.59 -20.24 15.39 -3.02 -0.05 -20.29 16 17 C -0.12 -2.37 3.96 29.85 0.12 -2.25 16 18 C -0.02 -0.47 5.00 29.85 0.15 -0.32 16 19 C 0.05 0.88 6.08 41.52 0.25 1.13 16 20 C -0.26 -3.49 11.07 66.78 0.74 -2.75 16 21 S 0.15 1.56 23.22 -56.49 -1.31 0.25 16 22 C 0.02 0.22 12.23 130.65 1.60 1.81 16 23 N -0.50 -9.68 10.34 -191.55 -1.98 -11.66 16 24 C 0.12 2.58 6.35 86.31 0.55 3.13 16 25 C -0.14 -4.17 5.32 30.67 0.16 -4.00 16 26 H 0.00 -0.27 7.42 -2.39 -0.02 -0.29 16 27 H 0.02 0.85 7.22 -2.39 -0.02 0.84 16 28 H 0.02 1.05 6.46 -2.39 -0.02 1.04 16 29 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 30 H 0.06 2.45 7.86 -2.39 -0.02 2.44 16 31 H 0.04 1.60 7.72 -2.38 -0.02 1.58 16 32 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 34 H 0.08 2.46 7.00 -2.39 -0.02 2.44 16 35 H 0.10 2.10 7.63 -2.39 -0.02 2.08 16 36 H 0.11 1.74 7.96 -2.39 -0.02 1.72 16 37 H 0.09 1.70 7.98 -2.39 -0.02 1.68 16 38 H 0.07 1.62 8.10 -2.39 -0.02 1.60 16 39 H 0.20 1.77 8.06 -2.91 -0.02 1.75 16 40 H 0.22 1.41 8.06 -2.91 -0.02 1.39 16 41 H 0.11 1.83 5.97 -2.39 -0.01 1.82 16 42 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.05 1.66 6.72 -2.38 -0.02 1.65 16 44 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 Total: -1.00 -72.06 363.90 2.84 -69.23 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.99 Total: 10.87 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 7.34 Total: 12.05 kcal Atomic # 7 Polarization: -113.07 SS G_CDS: -6.17 Total: -119.24 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.05 Total: -20.29 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -1.31 Total: 0.25 kcal Total: -72.06 2.84 -69.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985812613.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.098 kcal (2) G-P(sol) polarization free energy of solvation -72.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds