Wall clock time and date at job start Tue Mar 31 2020 14:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35269 * 126.70981 * 2 1 4 4 C 1.41926 * 103.96283 * 180.02562 * 3 2 1 5 5 O 1.35706 * 126.88108 * 179.97438 * 4 3 2 6 6 C 1.42901 * 117.00086 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47191 * 180.02562 * 6 5 4 8 8 O 1.21283 * 120.00168 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00262 * 180.02562 * 7 6 5 10 10 C 1.47488 * 127.02966 * 0.02562 * 9 7 6 11 11 C 1.54000 * 107.08296 * 205.41038 * 10 9 7 12 12 H 1.08998 * 110.32766 * 117.69290 * 11 10 9 13 13 N 1.46506 * 110.32988 * 239.80305 * 11 10 9 14 14 C 1.36933 * 119.99796 * 272.16666 * 13 11 10 15 15 H 1.08002 * 120.00461 * 359.97438 * 14 13 11 16 16 C 1.38815 * 119.99778 * 179.97438 * 14 13 11 17 17 N 1.31619 * 120.00048 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00050 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47010 * 60.00505 * 18 16 14 20 20 H 1.48503 * 109.47203 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47341 * 300.00392 * 18 16 14 22 22 C 1.54621 * 105.13645 * 358.74592 * 11 10 9 23 23 C 1.52998 * 110.73802 * 96.43188 * 22 11 10 24 24 C 1.52993 * 110.74216 * 219.76036 * 22 11 10 25 25 C 1.48114 * 127.03523 * 179.97438 * 9 7 6 26 26 N 1.30622 * 106.23977 * 0.24075 * 4 3 2 27 27 O 1.20914 * 111.49634 * 359.57511 * 26 4 3 28 28 H 1.09002 * 109.47325 * 90.00129 * 1 2 3 29 29 H 1.09000 * 109.47326 * 209.99822 * 1 2 3 30 30 H 1.09005 * 109.47209 * 330.00021 * 1 2 3 31 31 H 1.08006 * 128.01795 * 0.03674 * 3 2 1 32 32 H 1.09005 * 109.46888 * 60.00398 * 6 5 4 33 33 H 1.08998 * 109.47324 * 300.00800 * 6 5 4 34 34 H 1.09002 * 109.91015 * 86.05271 * 10 9 7 35 35 H 1.08997 * 110.07329 * 324.86199 * 10 9 7 36 36 H 0.96994 * 119.99820 * 92.16158 * 13 11 10 37 37 H 0.97000 * 119.99703 * 179.97438 * 17 16 14 38 38 H 1.09008 * 109.47129 * 60.00512 * 23 22 11 39 39 H 1.09001 * 109.47303 * 179.97438 * 23 22 11 40 40 H 1.09000 * 109.47746 * 300.00690 * 23 22 11 41 41 H 1.09007 * 109.46866 * 59.99750 * 24 22 11 42 42 H 1.09002 * 109.47136 * 179.97438 * 24 22 11 43 43 H 1.08994 * 109.47362 * 300.00089 * 24 22 11 44 44 H 1.08998 * 110.66182 * 259.18426 * 25 9 7 45 45 H 1.08996 * 110.66400 * 22.14121 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0844 0.0000 4 6 3.6245 0.5356 -0.0006 5 8 4.7953 1.2218 -0.0013 6 6 5.9988 0.4513 -0.0013 7 6 7.1879 1.3770 -0.0015 8 8 7.0212 2.5783 -0.0012 9 7 8.4367 0.8700 -0.0020 10 6 8.8168 -0.5550 -0.0030 11 6 10.2182 -0.6499 0.6284 12 1 10.1829 -1.2449 1.5409 13 7 11.1665 -1.2347 -0.3230 14 6 11.3196 -2.5938 -0.3893 15 1 10.7415 -3.2347 0.2600 16 6 12.2177 -3.1479 -1.2910 17 7 12.9226 -2.3669 -2.0820 18 14 12.4271 -5.0019 -1.3810 19 1 11.1290 -5.6300 -1.7359 20 1 13.4385 -5.3362 -2.4158 21 1 12.8806 -5.5135 -0.0627 22 6 10.6142 0.8090 0.9534 23 6 10.3041 1.1419 2.4142 24 6 12.0926 1.0511 0.6430 25 6 9.7080 1.6300 -0.0028 26 7 3.4765 -0.7621 -0.0062 27 8 2.3085 -1.0749 -0.0006 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 2.0311 2.1263 0.0005 32 1 6.0275 -0.1778 -0.8910 33 1 6.0280 -0.1770 0.8889 34 1 8.8441 -0.9313 -1.0257 35 1 8.1043 -1.1326 0.5860 36 1 11.6859 -0.6591 -0.9059 37 1 13.5505 -2.7541 -2.7118 38 1 10.8642 0.4717 3.0664 39 1 10.5911 2.1730 2.6207 40 1 9.2366 1.0180 2.5965 41 1 12.2771 0.8637 -0.4149 42 1 12.3489 2.0840 0.8788 43 1 12.7048 0.3783 1.2433 44 1 10.1358 1.6628 -1.0048 45 1 9.5537 2.6382 0.3814 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995927827.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:29 Heat of formation + Delta-G solvation = 17.187342 kcal Electronic energy + Delta-G solvation = -27505.917489 eV Core-core repulsion = 23528.435194 eV Total energy + Delta-G solvation = -3977.482295 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.10560 -40.24781 -39.03813 -37.64605 -34.13279 -34.10954 -33.25364 -32.72431 -30.85469 -29.24114 -28.10572 -27.82483 -26.81248 -25.63115 -23.89835 -23.62866 -21.88868 -21.42983 -19.31210 -18.66544 -18.10567 -18.06350 -17.33180 -17.00964 -16.47265 -16.36983 -15.59889 -15.21432 -14.68262 -14.24464 -14.19177 -14.03890 -13.89952 -13.70370 -13.58370 -13.50503 -12.98552 -12.80056 -12.68823 -12.53297 -12.02613 -11.92143 -11.79445 -11.65853 -11.41927 -11.30718 -10.99890 -10.92929 -10.60180 -10.50201 -10.28943 -9.91207 -9.81152 -9.77700 -9.65473 -9.39018 -9.04687 -8.45490 -7.12411 -5.88077 -3.18470 1.17180 2.06382 2.18285 2.62252 2.84808 3.36445 3.38195 3.43347 3.43668 3.97911 4.42206 4.49857 4.51017 4.68436 4.87687 4.90152 4.93535 4.97952 5.00676 5.04582 5.20563 5.24292 5.37128 5.42061 5.57287 5.59107 5.62425 5.72551 5.83723 5.92271 6.04093 6.09746 6.22055 6.24879 6.30184 6.37893 6.41829 6.56408 6.77701 6.79669 6.91304 7.60001 7.67602 8.03119 8.18815 8.30264 9.42099 9.95806 10.30767 11.33829 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013075 B = 0.002955 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.012199 B = 9473.152450 C =11141.272030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.012 4.012 3 C -0.233 4.233 4 C 0.213 3.787 5 O -0.258 6.258 6 C 0.051 3.949 7 C 0.534 3.466 8 O -0.534 6.534 9 N -0.608 5.608 10 C 0.067 3.933 11 C 0.177 3.823 12 H 0.068 0.932 13 N -0.713 5.713 14 C -0.249 4.249 15 H 0.071 0.929 16 C -0.007 4.007 17 N -0.929 5.929 18 Si 0.907 3.093 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.285 1.285 22 C -0.088 4.088 23 C -0.129 4.129 24 C -0.124 4.124 25 C 0.120 3.880 26 N -0.409 5.409 27 O 0.100 5.900 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.178 0.822 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.389 0.611 37 H 0.257 0.743 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.067 0.933 42 H 0.044 0.956 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.803 6.809 6.161 21.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.075 4.075 3 C -0.255 4.255 4 C 0.015 3.985 5 O -0.163 6.163 6 C -0.027 4.027 7 C 0.321 3.679 8 O -0.411 6.411 9 N -0.343 5.343 10 C -0.059 4.059 11 C 0.064 3.936 12 H 0.086 0.914 13 N -0.356 5.356 14 C -0.380 4.380 15 H 0.089 0.911 16 C -0.204 4.204 17 N -0.577 5.577 18 Si 0.738 3.262 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.090 4.090 23 C -0.187 4.187 24 C -0.182 4.182 25 C -0.002 4.002 26 N -0.136 5.136 27 O 0.039 5.961 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.196 0.804 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.226 0.774 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.026 6.567 6.138 21.043 hybrid contribution 0.112 -0.424 -0.412 0.602 sum -18.914 6.143 5.726 20.694 Atomic orbital electron populations 1.20373 0.83528 1.04880 1.04377 1.24354 0.96492 0.85662 1.01037 1.21789 0.88291 1.01671 1.13740 1.22066 0.88480 0.88022 0.99887 1.86254 1.10058 1.30941 1.89011 1.22455 0.81927 0.93507 1.04858 1.19379 0.82613 0.88362 0.77549 1.90721 1.85055 1.15066 1.50247 1.48660 1.04237 1.09762 1.71620 1.23631 0.99932 0.79367 1.02921 1.21076 0.87566 0.91584 0.93345 0.91437 1.42618 1.45559 1.04609 1.42767 1.19195 1.19035 0.82967 1.16810 0.91094 1.24745 0.99097 0.97815 0.98732 1.69640 1.28668 1.33824 1.25533 0.86276 0.77428 0.85260 0.77234 1.21176 1.21679 1.21187 1.21985 0.95869 0.96324 0.94795 1.21708 1.01075 1.01059 0.94850 1.21583 0.93476 1.00070 1.03083 1.22636 0.81976 0.95659 0.99897 1.74212 0.97801 1.14240 1.27353 1.84804 1.10311 1.31959 1.69015 0.89103 0.89529 0.88821 0.80424 0.88516 0.88651 0.90015 0.91980 0.77440 0.93285 0.92223 0.92836 0.93110 0.91370 0.93668 0.91601 0.90631 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.26 10.45 36.01 0.38 0.11 16 2 C -0.01 -0.10 7.48 -35.36 -0.26 -0.36 16 3 C -0.23 -2.38 11.10 -39.23 -0.44 -2.81 16 4 C 0.21 2.94 8.01 -16.66 -0.13 2.80 16 5 O -0.26 -4.04 9.74 -38.73 -0.38 -4.41 16 6 C 0.05 0.75 5.22 36.00 0.19 0.94 16 7 C 0.53 9.07 7.97 -10.99 -0.09 8.98 16 8 O -0.53 -10.70 16.71 -14.36 -0.24 -10.94 16 9 N -0.61 -9.91 3.19 -169.59 -0.54 -10.45 16 10 C 0.07 1.12 6.55 -2.98 -0.02 1.10 16 11 C 0.18 3.20 3.09 -66.55 -0.21 2.99 16 12 H 0.07 1.23 7.82 -51.93 -0.41 0.83 16 13 N -0.71 -16.16 4.48 -52.09 -0.23 -16.40 16 14 C -0.25 -6.40 9.96 -15.06 -0.15 -6.55 16 15 H 0.07 1.77 7.83 -52.49 -0.41 1.35 16 16 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 17 N -0.93 -26.59 13.06 55.49 0.72 -25.87 16 18 Si 0.91 21.47 29.55 -169.99 -5.02 16.45 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 C -0.09 -1.37 0.94 -152.48 -0.14 -1.51 16 23 C -0.13 -1.76 8.50 37.16 0.32 -1.45 16 24 C -0.12 -1.97 7.84 37.15 0.29 -1.68 16 25 C 0.12 1.91 5.99 -1.98 -0.01 1.90 16 26 N -0.41 -5.65 11.54 30.38 0.35 -5.30 16 27 O 0.10 1.14 11.19 17.07 0.19 1.33 16 28 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.18 1.38 8.06 -52.48 -0.42 0.96 16 32 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.10 1.27 7.92 -51.93 -0.41 0.86 16 34 H 0.08 1.53 7.92 -51.93 -0.41 1.12 16 35 H 0.06 0.92 7.55 -51.93 -0.39 0.53 16 36 H 0.39 9.36 5.58 -40.82 -0.23 9.13 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 38 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.70 8.07 -51.93 -0.42 0.28 16 41 H 0.07 1.21 6.25 -51.93 -0.32 0.89 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.08 1.24 8.03 -51.93 -0.42 0.82 16 45 H 0.08 1.23 7.77 -51.93 -0.40 0.82 16 LS Contribution 375.62 15.07 5.66 5.66 Total: -1.00 -32.03 375.62 -6.63 -38.65 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -6.76 Total: 7.11 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -0.38 Total: 4.17 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: 0.30 Total: -58.02 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.43 Total: -14.02 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.03 -6.63 -38.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995927827.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.842 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds