Wall clock time and date at job start Tue Mar 31 2020 14:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35269 * 126.70981 * 2 1 4 4 C 1.41926 * 103.96283 * 180.02562 * 3 2 1 5 5 O 1.35706 * 126.88108 * 179.97438 * 4 3 2 6 6 C 1.42901 * 117.00086 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47191 * 180.02562 * 6 5 4 8 8 O 1.21283 * 120.00168 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00262 * 180.02562 * 7 6 5 10 10 C 1.47488 * 127.02966 * 0.02562 * 9 7 6 11 11 C 1.54000 * 107.08296 * 205.41038 * 10 9 7 12 12 H 1.08998 * 110.32766 * 117.69290 * 11 10 9 13 13 N 1.46506 * 110.32988 * 239.80305 * 11 10 9 14 14 C 1.36933 * 119.99796 * 272.16666 * 13 11 10 15 15 H 1.08002 * 120.00461 * 359.97438 * 14 13 11 16 16 C 1.38815 * 119.99778 * 179.97438 * 14 13 11 17 17 N 1.31619 * 120.00048 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00050 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47010 * 60.00505 * 18 16 14 20 20 H 1.48503 * 109.47203 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47341 * 300.00392 * 18 16 14 22 22 C 1.54621 * 105.13645 * 358.74592 * 11 10 9 23 23 C 1.52998 * 110.73802 * 96.43188 * 22 11 10 24 24 C 1.52993 * 110.74216 * 219.76036 * 22 11 10 25 25 C 1.48114 * 127.03523 * 179.97438 * 9 7 6 26 26 N 1.30622 * 106.23977 * 0.24075 * 4 3 2 27 27 O 1.20914 * 111.49634 * 359.57511 * 26 4 3 28 28 H 1.09002 * 109.47325 * 90.00129 * 1 2 3 29 29 H 1.09000 * 109.47326 * 209.99822 * 1 2 3 30 30 H 1.09005 * 109.47209 * 330.00021 * 1 2 3 31 31 H 1.08006 * 128.01795 * 0.03674 * 3 2 1 32 32 H 1.09005 * 109.46888 * 60.00398 * 6 5 4 33 33 H 1.08998 * 109.47324 * 300.00800 * 6 5 4 34 34 H 1.09002 * 109.91015 * 86.05271 * 10 9 7 35 35 H 1.08997 * 110.07329 * 324.86199 * 10 9 7 36 36 H 0.96994 * 119.99820 * 92.16158 * 13 11 10 37 37 H 0.97000 * 119.99703 * 179.97438 * 17 16 14 38 38 H 1.09008 * 109.47129 * 60.00512 * 23 22 11 39 39 H 1.09001 * 109.47303 * 179.97438 * 23 22 11 40 40 H 1.09000 * 109.47746 * 300.00690 * 23 22 11 41 41 H 1.09007 * 109.46866 * 59.99750 * 24 22 11 42 42 H 1.09002 * 109.47136 * 179.97438 * 24 22 11 43 43 H 1.08994 * 109.47362 * 300.00089 * 24 22 11 44 44 H 1.08998 * 110.66182 * 259.18426 * 25 9 7 45 45 H 1.08996 * 110.66400 * 22.14121 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0844 0.0000 4 6 3.6245 0.5356 -0.0006 5 8 4.7953 1.2218 -0.0013 6 6 5.9988 0.4513 -0.0013 7 6 7.1879 1.3770 -0.0015 8 8 7.0212 2.5783 -0.0012 9 7 8.4367 0.8700 -0.0020 10 6 8.8168 -0.5550 -0.0030 11 6 10.2182 -0.6499 0.6284 12 1 10.1829 -1.2449 1.5409 13 7 11.1665 -1.2347 -0.3230 14 6 11.3196 -2.5938 -0.3893 15 1 10.7415 -3.2347 0.2600 16 6 12.2177 -3.1479 -1.2910 17 7 12.9226 -2.3669 -2.0820 18 14 12.4271 -5.0019 -1.3810 19 1 11.1290 -5.6300 -1.7359 20 1 13.4385 -5.3362 -2.4158 21 1 12.8806 -5.5135 -0.0627 22 6 10.6142 0.8090 0.9534 23 6 10.3041 1.1419 2.4142 24 6 12.0926 1.0511 0.6430 25 6 9.7080 1.6300 -0.0028 26 7 3.4765 -0.7621 -0.0062 27 8 2.3085 -1.0749 -0.0006 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 2.0311 2.1263 0.0005 32 1 6.0275 -0.1778 -0.8910 33 1 6.0280 -0.1770 0.8889 34 1 8.8441 -0.9313 -1.0257 35 1 8.1043 -1.1326 0.5860 36 1 11.6859 -0.6591 -0.9059 37 1 13.5505 -2.7541 -2.7118 38 1 10.8642 0.4717 3.0664 39 1 10.5911 2.1730 2.6207 40 1 9.2366 1.0180 2.5965 41 1 12.2771 0.8637 -0.4149 42 1 12.3489 2.0840 0.8788 43 1 12.7048 0.3783 1.2433 44 1 10.1358 1.6628 -1.0048 45 1 9.5537 2.6382 0.3814 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995927827.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:28 Heat of formation + Delta-G solvation = -3.757126 kcal Electronic energy + Delta-G solvation = -27506.825709 eV Core-core repulsion = 23528.435194 eV Total energy + Delta-G solvation = -3978.390515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.98884 -41.59154 -40.24142 -39.00521 -35.85581 -34.83297 -34.68730 -33.59565 -32.66399 -30.43583 -29.35516 -28.67209 -28.14109 -26.88207 -25.72020 -24.51914 -23.33108 -22.43511 -20.63412 -20.06532 -19.18555 -18.99963 -18.98253 -18.04722 -17.70852 -17.58698 -16.97132 -16.64432 -16.21590 -15.76324 -15.48429 -15.17042 -14.94630 -14.91513 -14.53559 -14.32209 -14.10359 -13.91653 -13.88753 -13.39042 -13.25022 -13.22747 -13.13574 -12.96605 -12.81715 -12.74545 -12.61291 -12.18808 -12.15118 -12.09096 -11.88581 -11.45932 -11.33963 -11.18094 -10.93393 -10.54377 -10.31664 -9.85747 -9.03882 -7.92784 -5.21240 0.42526 1.06185 1.15715 1.27334 1.50440 1.51329 1.57158 2.05565 2.30287 2.57432 3.05643 3.16290 3.38656 3.58254 3.70258 3.78252 3.79586 3.89019 3.90052 3.95593 4.02429 4.27332 4.36365 4.37169 4.54378 4.57299 4.71343 4.76563 4.78991 4.84565 4.85710 4.90282 4.96188 4.99643 5.07203 5.10709 5.26716 5.30287 5.38935 5.52975 5.58524 5.76284 6.28425 6.31289 6.82338 7.20076 7.37050 8.09684 8.33737 9.29869 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013075 B = 0.002955 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.012199 B = 9473.152450 C =11141.272030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.009 3.991 3 C -0.247 4.247 4 C 0.186 3.814 5 O -0.277 6.277 6 C 0.058 3.942 7 C 0.536 3.464 8 O -0.566 6.566 9 N -0.604 5.604 10 C 0.078 3.922 11 C 0.170 3.830 12 H 0.072 0.928 13 N -0.723 5.723 14 C -0.240 4.240 15 H 0.079 0.921 16 C -0.069 4.069 17 N -0.966 5.966 18 Si 0.966 3.034 19 H -0.280 1.280 20 H -0.301 1.301 21 H -0.279 1.279 22 C -0.078 4.078 23 C -0.123 4.123 24 C -0.117 4.117 25 C 0.119 3.881 26 N -0.434 5.434 27 O 0.093 5.907 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.199 0.801 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.380 0.620 37 H 0.250 0.750 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.043 0.957 42 H 0.071 0.929 43 H 0.052 0.948 44 H 0.066 0.934 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.194 6.748 7.552 24.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.055 4.055 3 C -0.269 4.269 4 C -0.011 4.011 5 O -0.183 6.183 6 C -0.020 4.020 7 C 0.324 3.676 8 O -0.445 6.445 9 N -0.337 5.337 10 C -0.047 4.047 11 C 0.059 3.941 12 H 0.090 0.910 13 N -0.364 5.364 14 C -0.371 4.371 15 H 0.097 0.903 16 C -0.262 4.262 17 N -0.616 5.616 18 Si 0.796 3.204 19 H -0.206 1.206 20 H -0.227 1.227 21 H -0.205 1.205 22 C -0.079 4.079 23 C -0.181 4.181 24 C -0.175 4.175 25 C -0.003 4.003 26 N -0.162 5.162 27 O 0.033 5.967 28 H 0.127 0.873 29 H 0.119 0.881 30 H 0.134 0.866 31 H 0.216 0.784 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.215 0.785 37 H 0.058 0.942 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.461 6.495 7.569 23.665 hybrid contribution 0.708 -0.357 -0.808 1.132 sum -20.753 6.137 6.761 22.673 Atomic orbital electron populations 1.20688 0.79691 1.06662 1.05992 1.25212 0.98162 0.84067 0.98025 1.22178 0.86948 1.03253 1.14520 1.22511 0.88743 0.88641 1.01194 1.86203 1.10744 1.31820 1.89561 1.22370 0.81163 0.92790 1.05691 1.19735 0.83089 0.88200 0.76581 1.90700 1.85491 1.16526 1.51816 1.48643 1.04385 1.09542 1.71167 1.23340 0.99635 0.79814 1.01932 1.21284 0.87260 0.93081 0.92435 0.90990 1.42748 1.46451 1.03717 1.43495 1.19584 1.17571 0.84458 1.15509 0.90279 1.25450 0.99905 1.01422 0.99409 1.69791 1.29930 1.35129 1.26767 0.85328 0.77054 0.81087 0.76953 1.20623 1.22743 1.20477 1.21923 0.95513 0.94290 0.96198 1.21664 1.01167 1.02261 0.92985 1.21492 0.93471 1.01388 1.01168 1.22651 0.81891 0.96106 0.99611 1.74190 0.99153 1.14517 1.28352 1.84752 1.10025 1.33048 1.68925 0.87312 0.88105 0.86627 0.78390 0.88094 0.87210 0.92105 0.89625 0.78500 0.94153 0.91598 0.91176 0.93127 0.93823 0.91002 0.92861 0.91597 0.89597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.26 10.45 71.24 0.74 0.48 16 2 C 0.01 0.13 7.48 25.00 0.19 0.32 16 3 C -0.25 -4.69 11.10 22.50 0.25 -4.44 16 4 C 0.19 5.04 8.01 85.79 0.69 5.72 16 5 O -0.28 -8.67 9.74 -71.23 -0.69 -9.36 16 6 C 0.06 1.68 5.22 71.23 0.37 2.06 16 7 C 0.54 17.95 7.97 87.66 0.70 18.65 16 8 O -0.57 -22.60 16.71 16.00 0.27 -22.33 16 9 N -0.60 -19.28 3.19 -808.85 -2.58 -21.86 16 10 C 0.08 2.55 6.55 86.53 0.57 3.12 16 11 C 0.17 6.02 3.09 45.88 0.14 6.16 16 12 H 0.07 2.51 7.82 -2.39 -0.02 2.50 16 13 N -0.72 -32.95 4.48 -318.72 -1.43 -34.38 16 14 C -0.24 -12.27 9.96 84.03 0.84 -11.43 16 15 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 16 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 17 N -0.97 -56.58 13.06 21.65 0.28 -56.30 16 18 Si 0.97 44.44 29.55 68.60 2.03 46.47 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 22 C -0.08 -2.33 0.94 -50.87 -0.05 -2.38 16 23 C -0.12 -3.08 8.50 71.98 0.61 -2.47 16 24 C -0.12 -3.66 7.84 71.98 0.56 -3.10 16 25 C 0.12 3.72 5.99 86.83 0.52 4.24 16 26 N -0.43 -11.79 11.54 -172.60 -1.99 -13.78 16 27 O 0.09 2.01 11.19 71.26 0.80 2.81 16 28 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.12 -0.01 8.14 -2.38 -0.02 -0.03 16 31 H 0.20 2.70 8.06 -2.91 -0.02 2.68 16 32 H 0.10 2.81 8.14 -2.38 -0.02 2.79 16 33 H 0.11 2.82 7.92 -2.39 -0.02 2.80 16 34 H 0.06 2.28 7.92 -2.39 -0.02 2.26 16 35 H 0.09 2.40 7.55 -2.39 -0.02 2.38 16 36 H 0.38 18.74 5.58 -92.71 -0.52 18.22 16 37 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 38 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 40 H 0.05 1.28 8.07 -2.39 -0.02 1.26 16 41 H 0.04 1.58 6.25 -2.38 -0.01 1.56 16 42 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.07 2.19 8.03 -2.39 -0.02 2.17 16 45 H 0.09 2.59 7.77 -2.39 -0.02 2.57 16 Total: -1.00 -70.30 375.62 3.77 -66.54 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 0.49 Total: 28.55 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 6.60 Total: 13.64 kcal Atomic # 7 Polarization: -120.60 SS G_CDS: -5.72 Total: -126.32 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: 0.37 Total: -28.88 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -70.30 3.77 -66.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995927827.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.780 kcal (2) G-P(sol) polarization free energy of solvation -70.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds